NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|332640495|gb|AEE74016|]
View 

evolutionarily conserved C-terminal region 1 [Arabidopsis thaliana]

Protein Classification

YTH domain-containing protein( domain architecture ID 10514278)

YTH (YT521-B homology) domain-containing protein acts as a N6-methyladenosine (m6A) reader to read m6A marks and transduces their downstream regulatory effects by altering m6A-mRNA metabolism processes

CATH:  3.10.590.10
Gene Ontology:  GO:0061157|GO:0003729|GO:0003730|GO:0043488|GO:1990247
PubMed:  12368078
SCOP:  4004472

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YTH pfam04146
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ...
 241-379 1.49e-64

YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily.


:

Pssm-ID: 461195  Cd Length: 135  Bit Score: 203.11  E-value: 1.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332640495  241 AKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKensqecPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYW 320
Cdd:pfam04146   1 ARFFIIKSLNEENIHLSIKYGIWATQPHNNKRLNEAFKESK------NVYLIFSVNKSGHFQGYARMTSPVDFDPSFIFW 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332640495  321 --QQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIFK 379
Cdd:pfam04146  75 eaDSDKWGGPFKVEWLSVKDLPFSRLRHLRNPLNENKPVKISRDGQEIEPEVGRQLLKLFD 135
 
Name Accession Description Interval E-value
YTH pfam04146
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ...
 241-379 1.49e-64

YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily.


Pssm-ID: 461195  Cd Length: 135  Bit Score: 203.11  E-value: 1.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332640495  241 AKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKensqecPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYW 320
Cdd:pfam04146   1 ARFFIIKSLNEENIHLSIKYGIWATQPHNNKRLNEAFKESK------NVYLIFSVNKSGHFQGYARMTSPVDFDPSFIFW 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332640495  321 --QQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIFK 379
Cdd:pfam04146  75 eaDSDKWGGPFKVEWLSVKDLPFSRLRHLRNPLNENKPVKISRDGQEIEPEVGRQLLKLFD 135
YTH cd21134
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ...
 242-378 4.78e-54

YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily.


Pssm-ID: 410979  Cd Length: 133  Bit Score: 176.22  E-value: 4.78e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332640495 242 KFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKensqecPVYLLFSVNASGQFVGLAEMVGPVDFNKT--MEY 319
Cdd:cd21134    1 RFFIIKSNNEENIHLSIKYGVWATQPHNEKKLNQAFRESG------NVYLIFSVNGSGHFQGYARMTSPPDPNRSpsWPW 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 332640495 320 WQQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIF 378
Cdd:cd21134   75 WSQDKLGGPFKVEWLRVKDLPFSKLRHLKNPLNENKPVTISRDGQEIEPEVGEQLLKLF 133
 
Name Accession Description Interval E-value
YTH pfam04146
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ...
 241-379 1.49e-64

YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily.


Pssm-ID: 461195  Cd Length: 135  Bit Score: 203.11  E-value: 1.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332640495  241 AKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKensqecPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYW 320
Cdd:pfam04146   1 ARFFIIKSLNEENIHLSIKYGIWATQPHNNKRLNEAFKESK------NVYLIFSVNKSGHFQGYARMTSPVDFDPSFIFW 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332640495  321 --QQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIFK 379
Cdd:pfam04146  75 eaDSDKWGGPFKVEWLSVKDLPFSRLRHLRNPLNENKPVKISRDGQEIEPEVGRQLLKLFD 135
YTH cd21134
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ...
 242-378 4.78e-54

YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily.


Pssm-ID: 410979  Cd Length: 133  Bit Score: 176.22  E-value: 4.78e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332640495 242 KFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKensqecPVYLLFSVNASGQFVGLAEMVGPVDFNKT--MEY 319
Cdd:cd21134    1 RFFIIKSNNEENIHLSIKYGVWATQPHNEKKLNQAFRESG------NVYLIFSVNGSGHFQGYARMTSPPDPNRSpsWPW 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 332640495 320 WQQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIF 378
Cdd:cd21134   75 WSQDKLGGPFKVEWLRVKDLPFSKLRHLKNPLNENKPVTISRDGQEIEPEVGEQLLKLF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH