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Conserved domains on  [gi|1039008351|gb|AEE35750|]
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WEB family protein (DUF827) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WEMBL super family cl25644
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 7-101 6.03e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


The actual alignment was detected with superfamily member pfam05701:

Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 36.93  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039008351   7 RAEIDTTAPFRTVKEAVALFGERVLASQVYSNHLKVIQMhdekwedpsgIKIELQETRYDLKRAKEESIQMRNSLSCLKE 86
Cdd:pfam05701   1 RGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKL----------VELELEKVQEEIPEYKKQSEAAEAAKAQVLE 70

                          90
                  ....*....|....*
gi 1039008351  87 ELERTKQELQKLRVD 101
Cdd:pfam05701  71 ELESTKRLIEELKLN 85
 
Name Accession Description Interval E-value
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 7-101 6.03e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 36.93  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039008351   7 RAEIDTTAPFRTVKEAVALFGERVLASQVYSNHLKVIQMhdekwedpsgIKIELQETRYDLKRAKEESIQMRNSLSCLKE 86
Cdd:pfam05701   1 RGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKL----------VELELEKVQEEIPEYKKQSEAAEAAKAQVLE 70

                          90
                  ....*....|....*
gi 1039008351  87 ELERTKQELQKLRVD 101
Cdd:pfam05701  71 ELESTKRLIEELKLN 85
 
Name Accession Description Interval E-value
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 7-101 6.03e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 36.93  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039008351   7 RAEIDTTAPFRTVKEAVALFGERVLASQVYSNHLKVIQMhdekwedpsgIKIELQETRYDLKRAKEESIQMRNSLSCLKE 86
Cdd:pfam05701   1 RGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKL----------VELELEKVQEEIPEYKKQSEAAEAAKAQVLE 70

                          90
                  ....*....|....*
gi 1039008351  87 ELERTKQELQKLRVD 101
Cdd:pfam05701  71 ELESTKRLIEELKLN 85
SOGA pfam11365
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, ...
 66-111 7.96e-03

Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, SOGA2, and SOGA3. SOGA1 regulates autophagy by playing a role in the reduction of glucose production in an adiponectin and insulin dependent manner.


Pssm-ID: 463264 [Multi-domain]  Cd Length: 95  Bit Score: 34.58  E-value: 7.96e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1039008351  66 DLKR----AKEESIQMRNSLSCLKEELERTKQELQKLRVDPGVNETKLDE 111
Cdd:pfam11365   4 ELRRqlqfVEEEAELLRRSLSEIEDHNKQLTNELNKYKSKYGPDESSLSD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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