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Conserved domains on  [gi|332189631|gb|AEE27752|]
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ubiquitin-specific protease 2 [Arabidopsis thaliana]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13671465)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
703-955 1.33e-50

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667  105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667  140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667  171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                        250       260
                 ....*....|....*....|....*....
gi 332189631 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667  251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
232-383 1.88e-42

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667   50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560  341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560  421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560  468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560  528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560  604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560  657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560  702 --------------------KE---------------------------------------------------------- 703
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560  704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|...
gi 332189631 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560  777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 332189631  105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
703-955 1.33e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667  105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667  140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667  171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                        250       260
                 ....*....|....*....|....*....
gi 332189631 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667  251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.88e-42

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667   50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-383 9.78e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 129.48  E-value: 9.78e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGP------LASSLRKLFTETKPeAGLKSVINPRAFFGSFCSK 304
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRynkdinLLCALRDLFKALQK-NSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332189631  305 APQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENES--------LITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSL 150
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
788-954 3.01e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.00  E-value: 3.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  788 TSCVKDHSSDGRKAARIHSADESESKGtQDEDEDSEKVITV-------------KRDATKKVLINKAPPVLTIHLKRFSQ 854
Cdd:pfam00443 138 VSETFEPFSDLSLPIPGDSAELKTASL-QICFLQFSKLEELddeekyycdkcgcKQDAIKQLKISRLPPVLIIHLKRFSY 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  855 DLRGRlSKLNGHVAFKEVIDLRQYMdsrCSGEDP-----PVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKetdssstaWY 929
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYL---AEELKPktnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNR--------WY 284
                         170       180
                  ....*....|....*....|....*.
gi 332189631  930 NVSDAYVRQVSLEK-VLHSEAYILFY 954
Cdd:pfam00443 285 KFDDEKVTEVDEETaVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560  341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560  421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560  468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560  528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560  604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560  657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560  702 --------------------KE---------------------------------------------------------- 703
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560  704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|...
gi 332189631 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560  777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
810-957 7.65e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 75.99  E-value: 7.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 810 SESKGTQDEDEDSEKVITVKRDATKKVlinKAPPVLTIHLKRFSQDLRGRlsKLNGHVafKEVIDLRQYMDSRCSGEDPP 889
Cdd:COG5533  151 DDETGVKAKENEELEVQAKQEYEVSFV---KLPKILTIQLKRFANLGGNQ--KIDTEV--DEKFELPVKHDQILNIVKET 223
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332189631 890 VYRLAGLVEHSGTMRGGHYVAYVRGGQRvketdssstaWYNVSDAYVRQVSLEKVLHSE---AYILFYERI 957
Cdd:COG5533  224 YYDLVGFVLHQGSLEGGHYIAYVKKGGK----------WEKANDSDVTPVSEEEAINEKaknAYLYFYERI 284
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 332189631  105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
106-154 4.11e-08

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 50.44  E-value: 4.11e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 332189631   106 NNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQL 154
Cdd:smart00290   7 TIENLWLCLTCGQVGCG-----RYQNGHALEHFEETGHPLVVKLGTQRV 50
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-327 2.04e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 44.41  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNL-LSLDRLRDHFlkengsgvgGPLASSLRKLFTE-TKPEAGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILaLYLPKLDELL---------DDLSKELKVLKNViRKPEPDLNQEEALKLFTALWSSKEHKVG 71
                         90       100
                 ....*....|....*....|..
gi 332189631 310 G----YDQHDSHELLRCLLDSL 327
Cdd:COG5533   72 WippmGSQEDAHELLGKLLDEL 93
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
703-955 1.33e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667  105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667  140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667  171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                        250       260
                 ....*....|....*....|....*....
gi 332189631 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667  251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.88e-42

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667   50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-383 9.78e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 129.48  E-value: 9.78e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGP------LASSLRKLFTETKPeAGLKSVINPRAFFGSFCSK 304
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRynkdinLLCALRDLFKALQK-NSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332189631  305 APQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENES--------LITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSL 150
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
701-954 1.04e-32

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 128.93  E-value: 1.04e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 701 EIDDSDlpvSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteila 780
Cdd:cd02661  157 DIKGAD---SLEDALEQFTKPEQLDGENKYKCERCKK------------------------------------------- 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 781 vkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvKRDATKKVLINKAPPVLTIHLKRFSQdlrGRL 860
Cdd:cd02661  191 ------------------------------------------------KVKASKQLTIHRAPNVLTIHLKRFSN---FRG 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 861 SKLNGHVAFKEVIDLRQYMDSrcSGEDPPVYRLAGLVEHSGT-MRGGHYVAYVRggqrvketdSSSTAWYNVSDAYVRQV 939
Cdd:cd02661  220 GKINKQISFPETLDLSPYMSQ--PNDGPLKYKLYAVLVHSGFsPHSGHYYCYVK---------SSNGKWYNMDDSKVSPV 288
                        250
                 ....*....|....*
gi 332189631 940 SLEKVLHSEAYILFY 954
Cdd:cd02661  289 SIETVLSQKAYILFY 303
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
829-955 3.20e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 126.06  E-value: 3.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 829 KRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRC----SGEDPPVYRLAGLVEHSGT-M 903
Cdd:cd02257  127 KQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEkdsdSDNGSYKYELVAVVVHSGTsA 206
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 332189631 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVL-----HSEAYILFYE 955
Cdd:cd02257  207 DSGHYVAYVK--------DPSDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
788-954 3.01e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.00  E-value: 3.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  788 TSCVKDHSSDGRKAARIHSADESESKGtQDEDEDSEKVITV-------------KRDATKKVLINKAPPVLTIHLKRFSQ 854
Cdd:pfam00443 138 VSETFEPFSDLSLPIPGDSAELKTASL-QICFLQFSKLEELddeekyycdkcgcKQDAIKQLKISRLPPVLIIHLKRFSY 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  855 DLRGRlSKLNGHVAFKEVIDLRQYMdsrCSGEDP-----PVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKetdssstaWY 929
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYL---AEELKPktnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNR--------WY 284
                         170       180
                  ....*....|....*....|....*.
gi 332189631  930 NVSDAYVRQVSLEK-VLHSEAYILFY 954
Cdd:pfam00443 285 KFDDEKVTEVDEETaVLSSSAYILFY 310
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
828-955 1.28e-27

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 112.00  E-value: 1.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 828 VKRDATKKVLINKAPPVLTIHLKRFSQDlRGRLSKLNGHVAFK-EVIDLRQYMDSRcSGEDPPVYRLAGLVEHSGTMRGG 906
Cdd:cd02674  112 KKRKATKKLTISRLPKVLIIHLKRFSFS-RGSTRKLTTPVTFPlNDLDLTPYVDTR-SFTGPFKYDLYAVVNHYGSLNGG 189
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 332189631 907 HYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02674  190 HYTAYCK--------NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-954 2.16e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 105.15  E-value: 2.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 829 KRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRC-----SGEDPP--VYRLAGLVEHSG 901
Cdd:cd02660  204 TQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIgdtqdSNSLDPdyTYDLFAVVVHKG 283
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 332189631 902 TMRGGHYVAYVRGGQRVketdssstaWYNVSDAYVRQVSLEKVLHSEAYILFY 954
Cdd:cd02660  284 TLDTGHYTAYCRQGDGQ---------WFKFDDAMITRVSEEEVLKSQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
231-383 9.67e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 102.74  E-value: 9.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFL-KENGSGVGGPLASSLRKL--FTETKPEAGLKSvINPRAFFGSFCSKAPQ 307
Cdd:cd02661    2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLsREHSKDCCNEGFCMMCALeaHVERALASSGPG-SAPRIFSSNLKQISKH 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332189631 308 FRGYDQHDSHELLRCLLDSLstEESALRKKRGVSDNDEKS--TTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02661   81 FRIGRQEDAHEFLRYLLDAM--QKACLDRFKKLKAVDPSSqeTTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL 156
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
817-955 1.50e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 97.82  E-value: 1.50e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 817 DEDEDSEKVITVKRDaTKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVidLRQYMdsrcsgedppvYRLAGL 896
Cdd:cd02662  103 DDFLSTEIIDDYKCD-RCQTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPER--LPKVL-----------YRLRAV 168
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 897 VEHSGTMRGGHYVAYVRGGQRVKETDSSSTA------------WYNVSDAYVRQVSLEKVL-HSEAYILFYE 955
Cdd:cd02662  169 VVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVrmregpsstshpWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560  341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560  421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560  468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560  528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560  604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560  657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560  702 --------------------KE---------------------------------------------------------- 703
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560  704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|...
gi 332189631 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560  777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
231-383 1.68e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 93.59  E-value: 1.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKE---NGSGVGGP---LASSLRKLFTETKpEAGLKSVINPRAFFGSFCSK 304
Cdd:cd02660    1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDrhsCTCLSCSPnscLSCAMDEIFQEFY-YSGDRSPYGPINLLYLSWKH 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332189631 305 APQFRGYDQHDSHELLRCLLDSLSTeeSALRKKRGVSDNDEkSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02660   80 SRNLAGYSQQDAHEFFQFLLDQLHT--HYGGDKNEANDESH-CNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSL 155
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-957 2.86e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 93.09  E-value: 2.86e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 829 KRDATKKVLINKAPPVLTIHLKRFSQDL-RGRLSKLNGHVAFKEVIDLRQYMD---SRCSGEDPP------VYRLAGLVE 898
Cdd:cd02659  180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFeTMMRIKINDRFEFPLELDMEPYTEkglAKKEGDSEKkdsesyIYELHGVLV 259
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332189631 899 HSGTMRGGHYVAYVRGG----------QRVKETDSSSTA--WYNVSDAYVRQVSLEK--VLHSEAYILFYERI 957
Cdd:cd02659  260 HSGDAHGGHYYSYIKDRddgkwykfndDVVTPFDPNDAEeeCFGGEETQKTYDSGPRafKRTTNAYMLFYERK 332
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
232-383 3.40e-18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 85.23  E-value: 3.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkengsgvggplasslrklftetkpeaglksvinpraffgsfcskapqfrgy 311
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 312 DQHDSHELLRCLLDSLsteESALRKKRGVSDNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02257   21 EQQDAHEFLLFLLDKL---HEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSL 89
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 2.28e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 78.30  E-value: 2.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGG--PLASSLRKLFT---ETKPEAGLKsvinPRAFFGSfcSKAP 306
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDsqSVMKKLQLLQAhlmHTQRRAEAP----PDYFLEA--SRPP 74
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 332189631 307 QFRGYDQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02664   75 WFTPGSQQDCSEYLRYLLDRLH--------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDL 131
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 3.17e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 77.35  E-value: 3.17e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkENgsgvggpLASSLRKLF---TETKPEAGlksVINPRAFFGSFCSKAPQF 308
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYF----------EN-------LLTCLKDLFesiSEQKKRTG---VISPKKFITRLKRENELF 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 309 RGYDQHDSHELLRCLL----DSLSTEESALRKKRGVSDN--DEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLS 382
Cdd:cd02663   61 DNYMHQDAHEFLNFLLneiaEILDAERKAEKANRKLNNNnnAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS 140

                 .
gi 332189631 383 L 383
Cdd:cd02663  141 I 141
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
227-383 6.17e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 77.30  E-value: 6.17e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 227 GYVvrGLVNLGNTCFFNSIMQNLLSLDRLRDHFL----KENGSGVGGpLASSLRKLFTETkpEAGLKSVI--NPRAFFGS 300
Cdd:cd02659    1 GYV--GLKNQGATCYMNSLLQQLYMTPEFRNAVYsippTEDDDDNKS-VPLALQRLFLFL--QLSESPVKttELTDKTRS 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 301 FCSKApqFRGYDQHDSHELLRCLLDSLsteesalrkkrgvsDNDEKSTT---LIESVFGGETSSIVSCMECGHSSKVYEP 377
Cdd:cd02659   76 FGWDS--LNTFEQHDVQEFFRVLFDKL--------------EEKLKGTGqegLIKNLFGGKLVNYIICKECPHESEREEY 139

                 ....*.
gi 332189631 378 FLDLSL 383
Cdd:cd02659  140 FLDLQV 145
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
810-957 7.65e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 75.99  E-value: 7.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 810 SESKGTQDEDEDSEKVITVKRDATKKVlinKAPPVLTIHLKRFSQDLRGRlsKLNGHVafKEVIDLRQYMDSRCSGEDPP 889
Cdd:COG5533  151 DDETGVKAKENEELEVQAKQEYEVSFV---KLPKILTIQLKRFANLGGNQ--KIDTEV--DEKFELPVKHDQILNIVKET 223
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332189631 890 VYRLAGLVEHSGTMRGGHYVAYVRGGQRvketdssstaWYNVSDAYVRQVSLEKVLHSE---AYILFYERI 957
Cdd:COG5533  224 YYDLVGFVLHQGSLEGGHYIAYVKKGGK----------WEKANDSDVTPVSEEEAINEKaknAYLYFYERI 284
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 9.06e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 76.22  E-value: 9.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVG-----GPLASSLRKLFTE--TKPEAglksvINPRAFFGSFCSK 304
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGanqssDNLTNALRDLFDTmdKKQEP-----VPPIEFLQLLRMA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 305 APQF------RGYDQHDSHELLRCLLDSLSteeSALRKKRGVSDNdeksttlIESVFGGETSSIVSCMECGHSSKV-YEP 377
Cdd:cd02657   76 FPQFaekqnqGGYAQQDAEECWSQLLSVLS---QKLPGAGSKGSF-------IDQLFGIELETKMKCTESPDEEEVsTES 145

                 ....*.
gi 332189631 378 FLDLSL 383
Cdd:cd02657  146 EYKLQC 151
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-955 1.90e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 72.45  E-value: 1.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 829 KRDATKKVLINKAPPVLTIHLKRFSQDLR-GRLSKLNGHVAFKEVIDLRQYMDSrcSGEDPPVYRLAGLVEHSGT-MRGG 906
Cdd:cd02668  185 KTDATRRIRLTTLPPTLNFQLLRFVFDRKtGAKKKLNASISFPEILDMGEYLAE--SDEGSYVYELSGVLIHQGVsAYSG 262
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 907 HYVAYVRggqrvketDSSSTAWYNVSDAYV-------------------RQVSLEKVLHS--EAYILFYE 955
Cdd:cd02668  263 HYIAHIK--------DEQTGEWYKFNDEDVeempgkplklgnsedpakpRKSEIKKGTHSsrTAYMLVYK 324
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 2.03e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 69.54  E-value: 2.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLlsldRLRDHFLKENGSGVGGPLASSLRKLFTETKPE--AGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:cd02671   26 GLNNLGNTCYLNSVLQVL----YFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEkyNDELANQAPRRLLNALREVNPMYE 101
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332189631 310 GYDQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02671  102 GYLQHDAQEVLQCILGNIQ--------------------ELVEKDFQGQLVLRTRCLECETFTERREDFQDISV 155
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
831-945 5.40e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 70.28  E-value: 5.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631  831 DATKKVLINKAPPVLTIHLKRFSQD-LRGRLSKLNGHVAFKEVIDLRQYM--DSRCSGEDPPVYRLAGLVEHSGTMRGGH 907
Cdd:COG5077   368 DAKKGVIFESLPPVLHLQLKRFEYDfERDMMVKINDRYEFPLEIDLLPFLdrDADKSENSDAVYVLYGVLVHSGDLHEGH 447
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 332189631  908 YVAYVRggqrvKETDSSstaWYNVSDAYVRQVSLEKVL 945
Cdd:COG5077   448 YYALLK-----PEKDGR---WYKFDDTRVTRATEKEVL 477
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.41e-11

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 65.39  E-value: 1.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkengsgvggplasslrklftetkpeaglksvinpraffgsfcskapqfrgy 311
Cdd:cd02674    1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332189631 312 DQHDSHELLRCLLDSLsteESalrkkrgvsdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02674   21 DQQDAQEFLLFLLDGL---HS-----------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSL 72
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
831-954 5.50e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 64.91  E-value: 5.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 831 DATKKVLINKAPPVLTIHLKRFSQ-----DLRGRLSKLNGHVAFKEVIDLRQYmdsrCSGEDPPVYRLAGLVEHSG-TMR 904
Cdd:cd02671  211 EAERSLLFDKLPEVITIHLKCFAAngsefDCYGGLSKVNTPLLTPLKLSLEEW----STKPKNDVYRLFAVVMHSGaTIS 286
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 332189631 905 GGHYVAYVRggqrvketdssstaWYNVSDAYVR---QVSLEKVLH------SEAYILFY 954
Cdd:cd02671  287 SGHYTAYVR--------------WLLFDDSEVKvteEKDFLEALSpntsstSTPYLLFY 331
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 8.52e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 63.15  E-value: 8.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHflkengsgvggplasslrklftetkpeagLKSVINpraffgsfcskapqfrgy 311
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSLIEY-----------------------------LEEFLE------------------ 33
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332189631 312 dQHDSHELLRCLLDSLsteesalrkkrgvsdnDEKSTTLIEsvfgGETSSIVSCMECGHSSKV-YEPFLDLSL 383
Cdd:cd02662   34 -QQDAHELFQVLLETL----------------EQLLKFPFD----GLLASRIVCLQCGESSKVrYESFTMLSL 85
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.58e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 60.51  E-value: 1.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTETKP-----------EAGLKSVINPRAFFgs 300
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIidqlqlifaqlQFGNRSVVDPSGFV-- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 301 fcsKAPQFRGYDQHDSHELLRCLLDSLsteESALRKKrgvsdNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLD 380
Cdd:cd02668   79 ---KALGLDTGQQQDAQEFSKLFLSLL---EAKLSKS-----KNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147

                 ...
gi 332189631 381 LSL 383
Cdd:cd02668  148 LEL 150
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-955 2.68e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 59.63  E-value: 2.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 829 KRDATKKVLINKAPPVLTIHLKRFSQDLR-GRLSKLNGHVAFKevIDLRQYMDSRCSGEDPPVYRLAGLVEH--SGTMRg 905
Cdd:cd02663  176 LQEAEKRMKIKKLPKILALHLKRFKYDEQlNRYIKLFYRVVFP--LELRLFNTTDDAENPDRLYELVAVVVHigGGPNH- 252
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 332189631 906 GHYVAYVR-GGQRVKETDSSSTAwynVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02663  253 GHYVSIVKsHGGWLLFDDETVEK---IDENAVEEFFGDSPNQATAYVLFYQ 300
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 332189631  105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-955 4.33e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 58.88  E-value: 4.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 818 EDEDSEKVITVKRDA--TKKVLINKAPPVLTIHLKRFS-QDLRGRLSKLNGHVAFKEVIDLRQYmdsrCSGEDppVYRLA 894
Cdd:cd02657  171 EEEIEKHSPTLGRDAiyTKTSRISRLPKYLTVQFVRFFwKRDIQKKAKILRKVKFPFELDLYEL----CTPSG--YYELV 244
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 895 GLVEHSG-TMRGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVL--------HSeAYILFYE 955
Cdd:cd02657  245 AVITHQGrSADSGHYVAWVR--------RKNDGKWIKFDDDKVSEVTEEDILklsgggdwHI-AYILLYK 305
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
830-955 7.10e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 58.66  E-value: 7.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 830 RDATKKVLINKAPPVLTIHLKRFSQDLRGRL-SKLNGHVAFKEVIDL--------------RQYMDSRCSGE---DPPVY 891
Cdd:cd02664  164 QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVrEKIMDNVSINEVLSLpvrveskssespleKKEEESGDDGElvtRQVHY 243
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 892 RLAGLVEHSGT-MRGGHYVAYVRGG-------------QRVKETDSSSTaWYNVSDAYVRQVSLEKVL-------HSEAY 950
Cdd:cd02664  244 RLYAVVVHSGYsSESGHYFTYARDQtdadstgqecpepKDAEENDESKN-WYLFNDSRVTFSSFESVQnvtsrfpKDTPY 322

                 ....*
gi 332189631 951 ILFYE 955
Cdd:cd02664  323 ILFYE 327
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
106-154 4.11e-08

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 50.44  E-value: 4.11e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 332189631   106 NNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQL 154
Cdd:smart00290   7 TIENLWLCLTCGQVGCG-----RYQNGHALEHFEETGHPLVVKLGTQRV 50
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
820-955 2.26e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 50.78  E-value: 2.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 820 EDSEKVITVKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIdlrqymdsrcsgeDPPVYRLAGLVEH 899
Cdd:cd02658  194 EDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL-------------GPGKYELIAFISH 260
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 332189631 900 SGT-MRGGHYVAYVRggqrvKETDSSSTaW--YNvsDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02658  261 KGTsVHSGHYVAHIK-----KEIDGEGK-WvlFN--DEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-955 3.20e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 49.45  E-value: 3.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 818 EDEDSEKVITVK----RDATKKVLiNKAPPVLTIHLKRFSQdLRGRLSKLNGHVAFKEVIDLRQYM------DSRCSGED 887
Cdd:cd02670   72 PDDDDGGGITLEqcleQYFNNSVF-AKAPSCLIICLKRYGK-TEGKAQKMFKKILIPDEIDIPDFVaddpraCSKCQLEC 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 888 PPVYR--------------LAGLVEHSGTMR-GGHYVAYVRGG---QRVKETDSSSTAWYNVSDAYVRQVSLE------K 943
Cdd:cd02670  150 RVCYDdkdfsptcgkfklsLCSAVCHRGTSLeTGHYVAFVRYGsysLTETDNEAYNAQWVFFDDMADRDGVSNgfnipaA 229
                        170
                 ....*....|..
gi 332189631 944 VLHSEAYILFYE 955
Cdd:cd02670  230 RLLEDPYMLFYQ 241
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
831-955 9.87e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 49.24  E-value: 9.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 831 DATKKVLINKAPPVLTIHLKRFsqdlrgrlSKLNGH-------VAFKEVI-DLRQYMDSRCSGEDPPV-YRLAGLVEHSG 901
Cdd:cd02669  322 DSLKRYLISRLPKYLIFHIKRF--------SKNNFFkeknptiVNFPIKNlDLSDYVHFDKPSLNLSTkYNLVANIVHEG 393
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 332189631 902 TMRG-GHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02669  394 TPQEdGTWRVQLR--------HKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
113-358 5.19e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 46.93  E-value: 5.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 113 CLECGCYVCGGvglpnGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPcqlllpvekeDNGEKKDVLSEVVKLIKGRSLNN 192
Cdd:cd02669   31 CLVCGKYFQGR-----GKGSHAYTHSLEDNHHVFLNLETLKF-YCLP----------DNYEIIDSSLDDIKYVLNPTYTK 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 193 LASSDIEDQCSGSGSItsdiklegavtSDIEARDGYVvrGLVNLGNTCFFNSIMQNLLSLDRLRDHFL--------KENG 264
Cdd:cd02669   95 EQISDLDRDPKLSRDL-----------DGKPYLPGFV--GLNNIKNNDYANVIIQALSHVKPIRNFFLlyenyeniKDRK 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 265 SGVGGPLASSLRKLFTetkPEAgLKSVINPRAFFG--SFCSKAPqFRGYDQHDSHELLRCLLDSLsteESALRKKRGvsd 342
Cdd:cd02669  162 SELVKRLSELIRKIWN---PRN-FKGHVSPHELLQavSKVSKKK-FSITEQSDPVEFLSWLLNTL---HKDLGGSKK--- 230
                        250
                 ....*....|....*.
gi 332189631 343 ndeKSTTLIESVFGGE 358
Cdd:cd02669  231 ---PNSSIIHDCFQGK 243
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.32e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 45.01  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGS---GVGGP---LASSLRKLFT------ETKPEAGLKSV------IN 293
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKfpsDVVDPandLNCQLIKLADgllsgrYSKPASLKSENdpyqvgIK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 294 PRAFfgsfcsKA------PQFRGYDQHDSHELLRCLLDSLSTEEsalrKKRGVSDndeksttlIESVFGGETSSIVSCME 367
Cdd:cd02658   81 PSMF------KAligkghPEFSTMRQQDALEFLLHLIDKLDRES----FKNLGLN--------PNDLFKFMIEDRLECLS 142
                        170
                 ....*....|....*.
gi 332189631 368 CGHSSKVYEPFLDLSL 383
Cdd:cd02658  143 CKKVKYTSELSEILSL 158
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-327 2.04e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 44.41  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 232 GLVNLGNTCFFNSIMQNL-LSLDRLRDHFlkengsgvgGPLASSLRKLFTE-TKPEAGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILaLYLPKLDELL---------DDLSKELKVLKNViRKPEPDLNQEEALKLFTALWSSKEHKVG 71
                         90       100
                 ....*....|....*....|..
gi 332189631 310 G----YDQHDSHELLRCLLDSL 327
Cdd:COG5533   72 WippmGSQEDAHELLGKLLDEL 93
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
778-955 1.68e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 41.36  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 778 ILAVKQDPNDTSCVKDHSSDGRKAARIHSADESESkgtqdededSEKVITVKRDATkkvlinkAPPVLTIHLKRFsqDLR 857
Cdd:cd02673   99 FLDVSMIDNKLDIDELLISNFKTWSPIEKDCSSCK---------CESAISSERIMT-------FPECLSINLKRY--KLR 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 858 GRLSKlnghvafkEVIDLRQYMDSRCSgeDPPVYRLAGLVEHSG-TMRGGHYVAYVRggqrvkeTDSSSTAWYNVSDAYV 936
Cdd:cd02673  161 IATSD--------YLKKNEEIMKKYCG--TDAKYSLVAVICHLGeSPYDGHYIAYTK-------ELYNGSSWLYCSDDEI 223
                        170       180
                 ....*....|....*....|..
gi 332189631 937 RQVSLEKVLH---SEAYILFYE 955
Cdd:cd02673  224 RPVSKNDVSTnarSSGYLIFYD 245
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
840-954 1.94e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.00  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332189631 840 KAPPVLTIHLKRFSQDlRGRLSKLNGHVAFKEVIdlRQYMdsrcsgedppvYRLAGLVEHSGTMRGGHYVAYVrggqrvk 919
Cdd:cd02665  127 ELPPVLTFELSRFEFN-QGRPEKIHDKLEFPQII--QQVP-----------YELHAVLVHEGQANAGHYWAYI------- 185
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 332189631 920 eTDSSSTAWYNVSDAYVRQVSLEKV--------LHSEAYILFY 954
Cdd:cd02665  186 -YKQSRQEWEKYNDISVTESSWEEVerdsfgggRNPSAYCLMY 227
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-265 6.42e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 39.78  E-value: 6.42e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 332189631 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGS 265
Cdd:cd02666    3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDES 36
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
233-259 7.50e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 39.05  E-value: 7.50e-03
                         10        20
                 ....*....|....*....|....*..
gi 332189631 233 LVNLGNTCFFNSIMQNLLSLDRLRDHF 259
Cdd:cd02673    2 LVNTGNSCYFNSTMQALSSIGKINTEF 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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