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Conserved domains on  [gi|332008347|gb|AED95730|]
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phosphoglycolate phosphatase [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF3685 super family cl13838
Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, ...
358-506 7.05e-10

Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.


The actual alignment was detected with superfamily member pfam12452:

Pssm-ID: 432564  Cd Length: 192  Bit Score: 58.66  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  358 LSSRALQKLRNEVA-LYQWlHQNLEAVVSMYEDRFDLYILQTQVINNLdgsddteslswwrkftlgktkaapssplrysi 436
Cdd:pfam12452  77 ISTREIERFRNNLSwKYRW-QNYWEEPKAIFESRYELFVLTDRGIEKT-------------------------------- 123
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  437 isdfSLPVKRTKELKALSGWRYYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGLIFTGIRQ 506
Cdd:pfam12452 124 ----SIYAPRDQELNQLSGIPLAVTLLLELRDAIAPRLRSLIAFLGSGVVYLLTQVIGRGIGLIGRGILQ 189
 
Name Accession Description Interval E-value
DUF3685 pfam12452
Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, ...
358-506 7.05e-10

Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.


Pssm-ID: 432564  Cd Length: 192  Bit Score: 58.66  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  358 LSSRALQKLRNEVA-LYQWlHQNLEAVVSMYEDRFDLYILQTQVINNLdgsddteslswwrkftlgktkaapssplrysi 436
Cdd:pfam12452  77 ISTREIERFRNNLSwKYRW-QNYWEEPKAIFESRYELFVLTDRGIEKT-------------------------------- 123
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  437 isdfSLPVKRTKELKALSGWRYYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGLIFTGIRQ 506
Cdd:pfam12452 124 ----SIYAPRDQELNQLSGIPLAVTLLLELRDAIAPRLRSLIAFLGSGVVYLLTQVIGRGIGLIGRGILQ 189
 
Name Accession Description Interval E-value
DUF3685 pfam12452
Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, ...
358-506 7.05e-10

Protein of unknown function (DUF3685); This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.


Pssm-ID: 432564  Cd Length: 192  Bit Score: 58.66  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  358 LSSRALQKLRNEVA-LYQWlHQNLEAVVSMYEDRFDLYILQTQVINNLdgsddteslswwrkftlgktkaapssplrysi 436
Cdd:pfam12452  77 ISTREIERFRNNLSwKYRW-QNYWEEPKAIFESRYELFVLTDRGIEKT-------------------------------- 123
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332008347  437 isdfSLPVKRTKELKALSGWRYYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGLIFTGIRQ 506
Cdd:pfam12452 124 ----SIYAPRDQELNQLSGIPLAVTLLLELRDAIAPRLRSLIAFLGSGVVYLLTQVIGRGIGLIGRGILQ 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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