|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
26-465 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 943.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 26 ALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKK 105
Cdd:PLN03132 1 ALRAFSTQAAATAATPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 106 SGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEY 185
Cdd:PLN03132 81 SGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 186 VNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTV 265
Cdd:PLN03132 161 VNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 266 TNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGS 345
Cdd:PLN03132 241 TNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 346 SVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVG 425
Cdd:PLN03132 321 SVPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVG 400
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 332003932 426 NAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465
Cdd:PLN03132 401 NAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 440
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
63-465 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 685.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 63 RIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLK-GTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNAD 141
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 142 ESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIH 221
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 222 FGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCI 301
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 302 SGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWdNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMD 381
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 382 KSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGL 461
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
....
gi 332003932 462 IRHF 465
Cdd:TIGR01959 400 IKHF 403
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
59-465 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 669.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 59 KDEDRIFTNLYGLHDPF-LKGAMKRGDWHRTKDLVLKGT-DWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKvSDGRPSYL 136
Cdd:COG1894 1 KKQTRVLLRNCGIIDPEsLEDYIARGGYQALRKALTEMTpEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 137 VVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDF 216
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 217 EVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGT 296
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 297 KLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGwDNLLAIIPGGSSVPLIPKNiCEDVLMDFDALKAVQSGLGTAA 376
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 377 VIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAW 456
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPN 397
|
....*....
gi 332003932 457 PVQGLIRHF 465
Cdd:COG1894 398 PVLSTLKYF 406
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
103-272 |
6.84e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 183.10 E-value: 6.84e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 103 MKKSGLRGRGGAGFPSGLKWSFMPKvsdGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIR 182
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPK---KKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 183 GEYVNERLNLEKARREAYAAGllgknacgsgydFEVYIHFGAGAYICGEETALLESLEGKqGKPRLKPpfPANAGLygcp 262
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 332003932 263 tTVTNVETVA 272
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
387-432 |
1.11e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 82.19 E-value: 1.11e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 332003932 387 VDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEI 432
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
26-465 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 943.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 26 ALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKK 105
Cdd:PLN03132 1 ALRAFSTQAAATAATPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 106 SGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEY 185
Cdd:PLN03132 81 SGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 186 VNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTV 265
Cdd:PLN03132 161 VNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 266 TNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGS 345
Cdd:PLN03132 241 TNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 346 SVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVG 425
Cdd:PLN03132 321 SVPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVG 400
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 332003932 426 NAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465
Cdd:PLN03132 401 NAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 440
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
58-465 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 920.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLV 137
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 138 VNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFE 217
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 218 VYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAV 377
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 378 IVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWP 457
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
....*...
gi 332003932 458 VQGLIRHF 465
Cdd:PRK13596 402 IQGLIRHF 409
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
54-465 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 874.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 54 HFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKV-SDGR 132
Cdd:PTZ00304 18 VHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVkPDGR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 133 PSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGS 212
Cdd:PTZ00304 98 PSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 213 GYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKN 292
Cdd:PTZ00304 178 GYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPN 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 293 NAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGL 372
Cdd:PTZ00304 258 NAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGL 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 373 GTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGD 452
Cdd:PTZ00304 338 GTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGD 417
|
410
....*....|...
gi 332003932 453 AAAWPVQGLIRHF 465
Cdd:PTZ00304 418 AAAWPVQGLIRHF 430
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
63-465 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 685.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 63 RIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLK-GTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNAD 141
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 142 ESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIH 221
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 222 FGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCI 301
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 302 SGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWdNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMD 381
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 382 KSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGL 461
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
....
gi 332003932 462 IRHF 465
Cdd:TIGR01959 400 IKHF 403
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
59-465 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 669.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 59 KDEDRIFTNLYGLHDPF-LKGAMKRGDWHRTKDLVLKGT-DWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKvSDGRPSYL 136
Cdd:COG1894 1 KKQTRVLLRNCGIIDPEsLEDYIARGGYQALRKALTEMTpEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 137 VVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDF 216
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 217 EVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGT 296
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 297 KLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGwDNLLAIIPGGSSVPLIPKNiCEDVLMDFDALKAVQSGLGTAA 376
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 377 VIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAW 456
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPN 397
|
....*....
gi 332003932 457 PVQGLIRHF 465
Cdd:COG1894 398 PVLSTLKYF 406
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
97-465 |
1.20e-113 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 342.55 E-value: 1.20e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 97 DWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASA 176
Cdd:PRK11278 49 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYR 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 177 AYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANA 256
Cdd:PRK11278 129 GYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATS 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 257 GLYGCPTTVTNVETVAVSPTILRRGPEWFSSF--GRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGW 334
Cdd:PRK11278 209 GVWGKPTCVNNVETLCNVPAILANGVEWYQNIskGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 335 dNLLAIIPGGSSVP-LIPKNIceDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTG 413
Cdd:PRK11278 289 -KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLP 365
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 332003932 414 WLWMIMERMKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHF 465
Cdd:PRK11278 366 WSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYF 418
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
103-272 |
6.84e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 183.10 E-value: 6.84e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 103 MKKSGLRGRGGAGFPSGLKWSFMPKvsdGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIR 182
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPK---KKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 183 GEYVNERLNLEKARREAYAAGllgknacgsgydFEVYIHFGAGAYICGEETALLESLEGKqGKPRLKPpfPANAGLygcp 262
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 332003932 263 tTVTNVETVA 272
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
388-465 |
4.04e-38 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 133.76 E-value: 4.04e-38
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332003932 388 DAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465
Cdd:pfam10589 1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYF 78
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
387-432 |
1.11e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 82.19 E-value: 1.11e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 332003932 387 VDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEI 432
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
99-344 |
1.18e-10 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 63.23 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 99 IVNEMKKSGLRGRGGAGFPSGLKWSFMPkvsDGRPSYLVVNADESEPG-TCKDReIMRHDPHKLLEGCLIAgvgMRASAA 177
Cdd:COG4656 124 IIERIREAGIVGLGGAGFPTHVKLSPPP---DKKIDTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRIL---MKALGA 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 178 ---YIYIrgeyvnerlnlEKARREAYAAglLGKnACGSGYDFEVYI---HFGAGAyicgeETALLESLEGKQ---GKprl 248
Cdd:COG4656 197 kkvIIGI-----------EDNKPEAIAA--LRK-ALAGDDDIEVVVlptKYPQGG-----EKQLIKALTGREvpsGG--- 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 249 kppFPANAGLygcptTVTNVETV-AVSPTILRRGP--EwfssfgrknnagtKLFCISGH-VNKPCTVEEEMSIPLKELIE 324
Cdd:COG4656 255 ---LPADVGV-----VVQNVGTAyAIYRAVRDGKPliE-------------RVVTVTGDaVKEPGNLLVRIGTPVSDLLE 313
|
250 260
....*....|....*....|
gi 332003932 325 rHCGGVRggwDNLLAIIPGG 344
Cdd:COG4656 314 -QAGGFK---EEPGKLIMGG 329
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
99-344 |
1.29e-08 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 56.97 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 99 IVNEMKKSGLRGRGGAGFPSGLKWSFMPkvsDGRPSYLVVNADESEPG-TCKDReIMRHDPHKLLEGCLIAGVGMRASAA 177
Cdd:TIGR01945 124 ILEKIRAAGIVGLGGATFPTHVKLNPPP---EKKIETLIINGAECEPYlTCDDR-LMRERAEEIIGGIRILLKILGVKKV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 178 YIYIrgeyvnerlnlEKARREAYAAglLGKNACGSGYDfevyIHFGAGAYICGEETALLESLEGKQGKPRlkpPFPANAG 257
Cdd:TIGR01945 200 VIGI-----------EDNKPEAIAA--LKKALGGYNIK----VRVLPTKYPQGGEKQLIYALTGREVPSG---GLPADIG 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332003932 258 LygcptTVTNVETVAVSPTILRRGPEWFSsfgrknnagtKLFCISGH-VNKPCTVEEEMSIPLKELIErHCGGVRggwDN 336
Cdd:TIGR01945 260 V-----VVQNVGTAFAIYEAVVNGKPLIE----------RVVTVTGDaIRRPKNLWVLIGTPVSDILA-FCGGFR---EK 320
|
....*...
gi 332003932 337 LLAIIPGG 344
Cdd:TIGR01945 321 PERLIMGG 328
|
|
| SLBB |
pfam10531 |
SLBB domain; |
299-335 |
3.71e-04 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 38.42 E-value: 3.71e-04
10 20 30
....*....|....*....|....*....|....*..
gi 332003932 299 FCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWD 335
Cdd:pfam10531 2 VTVTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDADL 38
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
107-167 |
5.00e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 42.63 E-value: 5.00e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332003932 107 GLRGRGGAGFPSGLKWSfmPKVSdgRPSYLVVNADESEPG-TCKDReIMRHDPHKLLEGCLI 167
Cdd:PRK05035 138 GIAGLGGAGFPTAVKLQ--PGGD--KIETLIINGAECEPYiTADDR-LMRERADEIIEGIRI 194
|
|
| |
