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Conserved domains on  [gi|330254095|gb|AEC09189|]
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Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 1.14e-33

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 125.79  E-value: 1.14e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 330254095  305 AGF 307
Cdd:pfam02536 310 ERF 312
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 1.14e-33

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 125.79  E-value: 1.14e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 330254095  305 AGF 307
Cdd:pfam02536 310 ERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 209-313 7.94e-17

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 80.91  E-value: 7.94e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095 209 NKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACA 288
Cdd:PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416

                         90       100
                 ....*....|....*....|....*
gi 330254095 289 AKGVRFPLPVMLKTNEAGFRDTLEV 313
Cdd:PLN03196 417 KKGIKCSLAWFLNCSDDKFEQRMSG 441
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 1.14e-33

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 125.79  E-value: 1.14e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095  225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 330254095  305 AGF 307
Cdd:pfam02536 310 ERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 209-313 7.94e-17

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 80.91  E-value: 7.94e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095 209 NKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACA 288
Cdd:PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416

                         90       100
                 ....*....|....*....|....*
gi 330254095 289 AKGVRFPLPVMLKTNEAGFRDTLEV 313
Cdd:PLN03196 417 KKGIKCSLAWFLNCSDDKFEQRMSG 441
PLN03196 PLN03196
MOC1-like protein; Provisional
 181-277 4.74e-12

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 66.66  E-value: 4.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095 181 LRPTLYFLQRIGILDPHKHTY--LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLmveM 258
Cdd:PLN03196  92 MRERVEFLHKLGLTIEDINEYplVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYL---Q 168

                         90       100
                 ....*....|....*....|....*
gi 330254095 259 GRDVR-----EVLE-FPQYFSFSLE 277
Cdd:PLN03196 169 GLDVKrqdipRVLErYPELLGFKLE 193
PLN03196 PLN03196
MOC1-like protein; Provisional
 132-293 7.90e-08

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 53.56  E-value: 7.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095 132 PELLTSPLTSHTIPVITFLlREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIlDPH-------KHTYLLS 204
Cdd:PLN03196 113 PLVLGCSVKKNMIPVLDYL-EKLGVTRS-SLPELLRRYPQVLHASVVVDLAPVVKYLQGLDV-KRQdiprvleRYPELLG 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254095 205 CSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLmVEMG---RDVREVLE-FPQYFSFSLENRI 280
Cdd:PLN03196 190 FKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL-ESLGlprLAVARILEkRPYILGFDLEETV 268

                        170
                 ....*....|...
gi 330254095 281 KPRHEACAAKGVR 293
Cdd:PLN03196 269 KPNVECLLEFGVR 281
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 215-277 2.92e-05

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 45.28  E-value: 2.92e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 330254095  215 IDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLmveMGRDV------REVLEFPQYFSFSLE 277
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFL---LSLGAsssdlgKILSKYPRILGFKLE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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