NCBI Conserved Domain Search

Conserved domains on [gi|330254043|gb|AEC09137|]

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FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

Protein Classification

FAD-dependent oxidoreductase( domain architecture ID 11428987)

FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH: 3.50.50.60

EC: 1.-.-.-

Gene Ontology: GO:0071949|GO:0016491

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

UbiH

COG0654

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...

46-410

1.70e-62

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis

Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 205.17 E-value: 1.70e-62

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM-VVKKEDGRE 124
Cdd:COG0654    5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLARGAPIRGIrVRDGSDGRV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 125 LRSFKFKDDDQSQEVrAVERRVLLETLASQLPPQ--TIRFSSKLESIQSNANGDTlLQLGDGTRLLAQIVIGCDGIRSKV 202
Cdd:COG0654   85 LARFDAAETGLPAGL-VVPRADLERALLEAARALgvELRFGTEVTGLEQDADGVT-VTLADGRTLRADLVVGADGARSAV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 203 ATWMG--FSEPKYVGHCAYRGLGFypngqpfqkkvnyiygkgiragyvpvsttkvywficfnspslgpkitdpailkkQA 280
Cdd:COG0654  163 RRLLGigFTGRDYPQRALWAGVRT------------------------------------------------------EL 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 281 KELVSTWPEDLQNLIDLTPdetISRTPLVDRwlwpgIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLAN 360
Cdd:COG0654  189 RARLAAAGPRLGELLELSP---RSAFPLRRR-----RAERWRRGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAA 260

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 330254043 361 AINGgtESIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRN 410
Cdd:COG0654  261 ALRG--RDDEAALARYERERRPRAARVQRAADALGRLFHPDSPPLRLLRN 308

Name

Accession

Description

Interval

E-value

UbiH

COG0654

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...

46-410

1.70e-62

Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 205.17 E-value: 1.70e-62

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM-VVKKEDGRE 124
Cdd:COG0654    5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLARGAPIRGIrVRDGSDGRV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 125 LRSFKFKDDDQSQEVrAVERRVLLETLASQLPPQ--TIRFSSKLESIQSNANGDTlLQLGDGTRLLAQIVIGCDGIRSKV 202
Cdd:COG0654   85 LARFDAAETGLPAGL-VVPRADLERALLEAARALgvELRFGTEVTGLEQDADGVT-VTLADGRTLRADLVVGADGARSAV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 203 ATWMG--FSEPKYVGHCAYRGLGFypngqpfqkkvnyiygkgiragyvpvsttkvywficfnspslgpkitdpailkkQA 280
Cdd:COG0654  163 RRLLGigFTGRDYPQRALWAGVRT------------------------------------------------------EL 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 281 KELVSTWPEDLQNLIDLTPdetISRTPLVDRwlwpgIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLAN 360
Cdd:COG0654  189 RARLAAAGPRLGELLELSP---RSAFPLRRR-----RAERWRRGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAA 260

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 330254043 361 AINGgtESIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRN 410
Cdd:COG0654  261 ALRG--RDDEAALARYERERRPRAARVQRAADALGRLFHPDSPPLRLLRN 308

PRK06753

hypothetical protein; Provisional

46-419

2.29e-48

hypothetical protein; Provisional

Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 169.48 E-value: 2.29e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGREL 125
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 126 RSFKFKdddQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLqLGDGTRLLAQIVIGCDGIRSKVATW 205
Cdd:PRK06753  82 NKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIH-FADGESEAFDLCIGADGIHSKVRQS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 206 MG-FSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGiRAGYVPVSTTKVYWFICFNSPSLGPKITDpaILKKQAKELV 284
Cdd:PRK06753 158 VNaDSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKG-RFGIVPLLNNQAYWFITINAKERDPKYSS--FGKPHLQAYF 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 285 STWPEDLQNLIDLTPDETISRTPLVDrwlwpgIAPPAS--KGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAi 362
Cdd:PRK06753 235 NHYPNEVREILDKQSETGILHHDIYD------LKPLKSfvYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY- 307

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 330254043 363 nggteSIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRNNIV--IPKLLR 419
Cdd:PRK06753 308 -----DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMkrMPNALA 361

FAD_binding_3

pfam01494

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.

44-384

3.69e-19

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.

Pssm-ID: 396193 [Multi-domain] Cd Length: 348 Bit Score: 88.15 E-value: 3.69e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   44 EEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM--VVKKED 121
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMglAFYNTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  122 GRELRSFKFK-----DDDQSQevraVErRVLLEtlASQLPPQTIRFSSKLESIQSNANGDT--LLQLGDGT--RLLAQIV 192
Cdd:pfam01494  81 RRADLDFLTSpprvtVYPQTE----LE-PILVE--HAEARGAQVRFGTEVLSLEQDGDGVTavVRDRRDGEeyTVRAKYL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  193 IGCDGIRSKV---------------ATWMG--FSEPKYVGHCAYRGLGFYPNGQPFQkkvnyiyGKGIRagyvPVS--TT 253
Cdd:pfam01494 154 VGCDGGRSPVrktlgiefegfegvpFGSLDvlFDAPDLSDPVERAFVHYLIYAPHSR-------GFMVG----PWRsaGR 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  254 KVYWFICFNSPSLG---PKITDPAiLKKQAKELVSTwpedlqNLIDLTPDEtISRTPLVDRwlwpgIAPPASKGRVVLVG 330
Cdd:pfam01494 223 ERYYVQVPWDEEVEerpEEFTDEE-LKQRLRSIVGI------DLALVEILW-KSIWGVASR-----VATRYRKGRVFLAG 289

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 330254043  331 DAWHPMTPNLGQGACCALEDSVVLANKLANAING-GTESIevaMESYGSERWSRA 384
Cdd:pfam01494 290 DAAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGqAGESL---LDTYSAERLPVA 341

Ubi-OHases

TIGR01988

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...

47-410

6.54e-13

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]

Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 69.92 E-value: 6.54e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLR-------------TGGTSLTLFKNG-WRVLDAISVGPqlrtqfleI 112
Cdd:TIGR01988   2 IVIVGGGMVGLALALALARSGLKVALIEATPLPApadpgfdnrvsalSAASIRLLEKLGvWDKIEPARAQP--------I 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  113 EGMVVKkeDGRELRSFKFKDDDQSQEVRA--VERRVLLETL---ASQLPPQTIRFSSKLESIQSNANGdTLLQLGDGTRL 187
Cdd:TIGR01988  74 RDIHVS--DGGSFGALRFDADEIGLEALGyvVENRVLQQALwerLQELPNVTLLCPARVVELPRHSDH-VELTLDDGQQL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  188 LAQIVIGCDGIRSKVATWMGF------------------SEPKyvGHCAY-RglgFYPNGqPFqkkvnyiygkgiraGYV 248
Cdd:TIGR01988 151 RARLLVGADGANSKVRQLAGIpttgwdygqsavvanvkhERPH--QGTAWeR---FTPTG-PL--------------ALL 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  249 PvsttkvywficfnspslgpkitdpaiLKKQAKELV-STWPEDLQNLIDLtPDETISR-------------TPLVDRWLW 314
Cdd:TIGR01988 211 P--------------------------LPDNRSSLVwTLPPEEAERLLAL-SDEEFLAelqrafgsrlgaiTLVGERHAF 263

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  315 P---GIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTE--SIEVaMESYGSERWSRAFPLTV 389
Cdd:TIGR01988 264 PlslTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDigSLRV-LQRYERRRRFDNAAMLG 342

                         410       420
                  ....*....|....*....|.
gi 330254043  390 RANLVGALLQWENPLVCSIRN 410
Cdd:TIGR01988 343 ATDGLNRLFSNDFPPLRLLRN 363

Rubrum_tdh

cd05304

Rubrum transdehydrogenase NAD-binding and catalytic domains; Transhydrogenases found in ...

46-88

3.22e-05

Rubrum transdehydrogenase NAD-binding and catalytic domains; Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.

Pssm-ID: 240629 [Multi-domain] Cd Length: 363 Bit Score: 45.86 E-value: 3.22e-05

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 330254043  46 KVVIVGAGIGGL---ATAvslHRLG-------IRSVVLEQAESLrtGGTSLTL 88
Cdd:cd05304  168 KVLVIGAGVAGLqaiATA---KRLGavveafdVRPAAKEQVESL--GAKFVEV 215

Name

Accession

Description

Interval

E-value

UbiH

COG0654

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...

46-410

1.70e-62

Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 205.17 E-value: 1.70e-62

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM-VVKKEDGRE 124
Cdd:COG0654    5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLARGAPIRGIrVRDGSDGRV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 125 LRSFKFKDDDQSQEVrAVERRVLLETLASQLPPQ--TIRFSSKLESIQSNANGDTlLQLGDGTRLLAQIVIGCDGIRSKV 202
Cdd:COG0654   85 LARFDAAETGLPAGL-VVPRADLERALLEAARALgvELRFGTEVTGLEQDADGVT-VTLADGRTLRADLVVGADGARSAV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 203 ATWMG--FSEPKYVGHCAYRGLGFypngqpfqkkvnyiygkgiragyvpvsttkvywficfnspslgpkitdpailkkQA 280
Cdd:COG0654  163 RRLLGigFTGRDYPQRALWAGVRT------------------------------------------------------EL 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 281 KELVSTWPEDLQNLIDLTPdetISRTPLVDRwlwpgIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLAN 360
Cdd:COG0654  189 RARLAAAGPRLGELLELSP---RSAFPLRRR-----RAERWRRGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAA 260

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 330254043 361 AINGgtESIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRN 410
Cdd:COG0654  261 ALRG--RDDEAALARYERERRPRAARVQRAADALGRLFHPDSPPLRLLRN 308

PRK06753

hypothetical protein; Provisional

46-419

2.29e-48

hypothetical protein; Provisional

Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 169.48 E-value: 2.29e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGREL 125
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 126 RSFKFKdddQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLqLGDGTRLLAQIVIGCDGIRSKVATW 205
Cdd:PRK06753  82 NKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIH-FADGESEAFDLCIGADGIHSKVRQS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 206 MG-FSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGiRAGYVPVSTTKVYWFICFNSPSLGPKITDpaILKKQAKELV 284
Cdd:PRK06753 158 VNaDSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKG-RFGIVPLLNNQAYWFITINAKERDPKYSS--FGKPHLQAYF 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 285 STWPEDLQNLIDLTPDETISRTPLVDrwlwpgIAPPAS--KGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAi 362
Cdd:PRK06753 235 NHYPNEVREILDKQSETGILHHDIYD------LKPLKSfvYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY- 307

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 330254043 363 nggteSIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRNNIV--IPKLLR 419
Cdd:PRK06753 308 -----DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMkrMPNALA 361

PRK06847

hypothetical protein; Provisional

45-384

4.04e-42

hypothetical protein; Provisional

Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 152.72 E-value: 4.04e-42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  45 EKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDG-- 122
Cdd:PRK06847   5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGtl 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 123 -RELRSFKFKDDDQSQEVrAVERRVLLETLAS--QLPPQTIRFSSKLESIQSNANGDTLlQLGDGTRLLAQIVIGCDGIR 199
Cdd:PRK06847  85 lAELPTPRLAGDDLPGGG-GIMRPALARILADaaRAAGADVRLGTTVTAIEQDDDGVTV-TFSDGTTGRYDLVVGADGLY 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 200 SKV--ATWMGFSEPKYVGHCAYRGlgFYPNGQPFQKKVNYIyGKGIRAGYVPVSTTKVYWFICFNSPSLgPKItDPAILK 277
Cdd:PRK06847 163 SKVrsLVFPDEPEPEYTGQGVWRA--VLPRPAEVDRSLMYL-GPTTKAGVVPLSEDLMYLFVTEPRPDN-PRI-EPDTLA 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 278 KQAKELVSTWP-EDLQNLID-LTPDETISRTPLvDRWLWPGiapPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLA 355
Cdd:PRK06847 238 ALLRELLAPFGgPVLQELREqITDDAQVVYRPL-ETLLVPA---PWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA 313

                        330       340
                 ....*....|....*....|....*....
gi 330254043 356 NKLANAinggtESIEVAMESYGSERWSRA 384
Cdd:PRK06847 314 EELARH-----DSLEAALQAYYARRWERC 337

PRK08163

3-hydroxybenzoate 6-monooxygenase;

42-383

2.64e-35

3-hydroxybenzoate 6-monooxygenase;

Pssm-ID: 181262 [Multi-domain] Cd Length: 396 Bit Score: 134.78 E-value: 2.64e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  42 DQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKE- 120
Cdd:PRK08163   2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAv 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 121 DGRELRSFkfkDDDQSQEVR-----AVERR-----VLLETlASQLPPQTIRFSSKLESIQSNANGDTlLQLGDGTRLLAQ 190
Cdd:PRK08163  82 DAEEVVRI---PTGQAFRARfgnpyAVIHRadihlSLLEA-VLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQQGNRWTGD 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 191 IVIGCDGIRSKVATWMGFSEPKYVGHCAYRG-------------------------LGFYP--NGQPFQKKVNYIYGKGI 243
Cdd:PRK08163 157 ALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAvidvddmpedlrinapvlwagphchLVHYPlrGGEQYNLVVTFHSREQE 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 244 RAGYVPVSTTKVY-WF--ICfnspslgPKItdpailkKQAKELVSTWPEDLqnlidltpdeTISRTPlVDRWlwpgiapp 320
Cdd:PRK08163 237 EWGVKDGSKEEVLsYFegIH-------PRP-------RQMLDKPTSWKRWA----------TADREP-VAKW-------- 283

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 330254043 321 aSKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINggteSIEVAMESYGSERWSR 383
Cdd:PRK08163 284 -STGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDG----DAEAAFALYESVRIPR 341

PRK07538

hypothetical protein; Provisional

46-380

5.98e-25

hypothetical protein; Provisional

Pssm-ID: 236046 [Multi-domain] Cd Length: 413 Bit Score: 106.13 E-value: 5.98e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGREL 125
Cdd:PRK07538   2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 126 RSfkfkdddqsqEVR-----------AVER----RVLLETLASQLPPQTIRFSSKLESIQSNANGDTL----LQLGDGTR 186
Cdd:PRK07538  82 WS----------EPRglaagydwpqySIHRgelqMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVflgdRAGGDLVS 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 187 LLAQIVIGCDGIRSKVATWM--GFSEPKYVGHCAYRGLGFYPngqPFQKKVNYIYGKGIRAGYV--PVS-------TTKV 255
Cdd:PRK07538 152 VRGDVLIGADGIHSAVRAQLypDEGPPRWNGVMMWRGVTEAP---PFLTGRSMVMAGHLDGKLVvyPISepvdadgRQLI 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 256 YWFICFNSP-SLGPKITD---PAILKKQAKELVS-TWPE-DLQNLIDLTpdETISRTPLVDR-----WlwpgiappaSKG 324
Cdd:PRK07538 229 NWVAEVRVDdAGAPRREDwnrPGDLEDFLPHFADwRFDWlDVPALIRAA--EAIYEYPMVDRdplprW---------TRG 297

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 330254043 325 RVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLAnaingGTESIEVAMESYGSER 380
Cdd:PRK07538 298 RVTLLGDAAHPMYPVGSNGASQAILDARALADALA-----AHGDPEAALAAYEAER 348

PLN02927

antheraxanthin epoxidase/zeaxanthin epoxidase

43-401

1.31e-24

antheraxanthin epoxidase/zeaxanthin epoxidase

Pssm-ID: 178515 [Multi-domain] Cd Length: 668 Bit Score: 106.72 E-value: 1.31e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  43 QEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQ-AESLRTGGT---SLTLFKNGWRVLDAISVgpQLRTQFLE------- 111
Cdd:PLN02927  80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKdLSAIRGEGKyrgPIQIQSNALAALEAIDI--DVAEQVMEagcitgd 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 112 -IEGMVvkkeDG------RELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLqLGDG 184
Cdd:PLN02927 158 rINGLV----DGisgswyVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVV-LENG 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 185 TRLLAQIVIGCDGIRSKVAT-WMGFSEPKYVGHCAYRGLG-FYPNGQpfqKKVNYIYGKGIRAGYVP--VSTTKVYWFIC 260
Cdd:PLN02927 233 QRYEGDLLVGADGIWSKVRNnLFGRSEATYSGYTCYTGIAdFIPADI---ESVGYRVFLGHKQYFVSsdVGGGKMQWYAF 309

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 261 FNSPSLGPKItdPAILKKQAKELVSTWPEDLQNLIDLTPDETISRTPLVDRWlwPGIAppASKGRVVLVGDAWHPMTPNL 340
Cdd:PLN02927 310 HEEPAGGADA--PNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRS--PGFT--WGKGRVTLLGDSIHAMQPNM 383

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 330254043 341 GQGACCALEDSVVLANKLanainggtesievamesygSERWSRAFPLTVRANLVGALLQWE 401
Cdd:PLN02927 384 GQGGCMAIEDSFQLALEL-------------------DEAWKQSVETNTPVDVVSSLKRYE 425

PRK06126

hypothetical protein; Provisional

46-390

9.58e-20

hypothetical protein; Provisional

Pssm-ID: 235704 [Multi-domain] Cd Length: 545 Bit Score: 91.59 E-value: 9.58e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLE----QAESLRTGGT---SLTLFKNgWRVLDAI-SVG-----PQ---LRTQF 109
Cdd:PRK06126   9 PVLIVGGGPVGLALALDLGRRGVDSILVErkdgTAFNPKANTTsarSMEHFRR-LGIADEVrSAGlpvdyPTdiaYFTRL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 110 LeiegmvvkkedGRELRSFKF--------KDDDQSQEVRAVER----------RVLLETlASQLPPQTIRFSSKLESIQS 171
Cdd:PRK06126  88 T-----------GYELARFRLpsareaitPVGGPDGSWPSPELphripqkylePILLEH-AAAQPGVTLRYGHRLTDFEQ 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 172 NANGDTLL--QLGDGTRLL--AQIVIGCDGIRSKVATWMGFSepkYVG-HCAYRGLGFY---PN-GQPFQKKVNYIY--- 239
Cdd:PRK06126 156 DADGVTATveDLDGGESLTirADYLVGCDGARSAVRRSLGIS---YEGtSGLQRDLSIYiraPGlAALVGHDPAWMYwlf 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 240 GKGIRAGYVPVSTTKVYWFIcfnspSLGPKITDPAILKKQAKELVstwpedlQNLIDLTPD-ETISRTPLVDRWLwpgIA 318
Cdd:PRK06126 233 NPDRRGVLVAIDGRDEWLFH-----QLRGGEDEFTIDDVDARAFV-------RRGVGEDIDyEVLSVVPWTGRRL---VA 297

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 330254043 319 PPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAING-GTESIevaMESYGSERwsRafPLTVR 390
Cdd:PRK06126 298 DSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGwAGPAL---LDSYEAER--R--PIAAR 363

FAD_binding_3

pfam01494

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.

44-384

3.69e-19

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.

Pssm-ID: 396193 [Multi-domain] Cd Length: 348 Bit Score: 88.15 E-value: 3.69e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   44 EEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM--VVKKED 121
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMglAFYNTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  122 GRELRSFKFK-----DDDQSQevraVErRVLLEtlASQLPPQTIRFSSKLESIQSNANGDT--LLQLGDGT--RLLAQIV 192
Cdd:pfam01494  81 RRADLDFLTSpprvtVYPQTE----LE-PILVE--HAEARGAQVRFGTEVLSLEQDGDGVTavVRDRRDGEeyTVRAKYL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  193 IGCDGIRSKV---------------ATWMG--FSEPKYVGHCAYRGLGFYPNGQPFQkkvnyiyGKGIRagyvPVS--TT 253
Cdd:pfam01494 154 VGCDGGRSPVrktlgiefegfegvpFGSLDvlFDAPDLSDPVERAFVHYLIYAPHSR-------GFMVG----PWRsaGR 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  254 KVYWFICFNSPSLG---PKITDPAiLKKQAKELVSTwpedlqNLIDLTPDEtISRTPLVDRwlwpgIAPPASKGRVVLVG 330
Cdd:pfam01494 223 ERYYVQVPWDEEVEerpEEFTDEE-LKQRLRSIVGI------DLALVEILW-KSIWGVASR-----VATRYRKGRVFLAG 289

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 330254043  331 DAWHPMTPNLGQGACCALEDSVVLANKLANAING-GTESIevaMESYGSERWSRA 384
Cdd:pfam01494 290 DAAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGqAGESL---LDTYSAERLPVA 341

mhpA

PRK06183

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;

47-380

4.63e-17

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;

Pssm-ID: 235727 [Multi-domain] Cd Length: 500 Bit Score: 83.03 E-value: 4.63e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL----RtgGTSL---TLfkngwRVLDAISVGPqlrtQFLEI----EGM 115
Cdd:PRK06183  13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLydlpR--AVGIddeAL-----RVLQAIGLAD----EVLPHttpnHGM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 116 VVKKEDGRELRSFKFKDDDQS---------QEvrAVErRVLLETLAsQLPPQTIRFSSKLESIQSNANGDTLLQLG-DGT 185
Cdd:PRK06183  82 RFLDAKGRCLAEIARPSTGEFgwprrnafhQP--LLE-AVLRAGLA-RFPHVRVRFGHEVTALTQDDDGVTVTLTDaDGQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 186 R--LLAQIVIGCDGIRSKVATWMGFSepkyvghcaYRGLGFY-------------PNGQPFqkkvNYIYGKGIRAG-YVP 249
Cdd:PRK06183 158 RetVRARYVVGCDGANSFVRRTLGVP---------FEDLTFPerwlvvdvliandPLGGPH----TYQYCDPARPYtSVR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 250 VSTTKVYW-FicfnspSLGPKITDPAILKkqakelvstwPEDLQNLI---DLTPDE-TISR-------TPLVDRWlwpgi 317
Cdd:PRK06183 225 LPHGRRRWeF------MLLPGETEEQLAS----------PENVWRLLapwGPTPDDaELIRhavytfhARVADRW----- 283

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 330254043 318 appaSKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTEsiEVAMESYGSER 380
Cdd:PRK06183 284 ----RSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAG--DALLDTYEQER 340

PRK07588

FAD-binding domain;

46-361

3.10e-16

FAD-binding domain;

Pssm-ID: 169028 [Multi-domain] Cd Length: 391 Bit Score: 80.16 E-value: 3.10e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRel 125
Cdd:PRK07588   2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGR-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 126 RSFKFKDD----DQSQEVRAVERRVLLETLASQLPPQT-IRFSSKLESIQSNANGDTlLQLGDGTRLLAQIVIGCDGIRS 200
Cdd:PRK07588  80 RKADLNVDsfrrMVGDDFTSLPRGDLAAAIYTAIDGQVeTIFDDSIATIDEHRDGVR-VTFERGTPRDFDLVIGADGLHS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 201 KVATWMGFSEP-------KYVGHCAYRGlgfYPngqPFQKKVNYIY-GKGIRAGYVPVSTTKVYWFICFNSPSLGPKIT- 271
Cdd:PRK07588 159 HVRRLVFGPERdfehylgCKVAACVVDG---YR---PRDERTYVLYnEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTp 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 272 --DPAILKKQAKELvsTWP-EDLQNLIDLTPD---ETISRTPLvDRWlwpgiappaSKGRVVLVGDAWHPMTPNLGQGAC 345
Cdd:PRK07588 233 aeEKQLLRDQFGDV--GWEtPDILAALDDVEDlyfDVVSQIRM-DRW---------SRGRVALVGDAAACPSLLGGEGSG 300

                        330
                 ....*....|....*.
gi 330254043 346 CALEDSVVLANKLANA 361
Cdd:PRK07588 301 LAITEAYVLAGELARA 316

PRK06475

FAD-binding protein;

44-358

7.10e-15

FAD-binding protein;

Pssm-ID: 180582 [Multi-domain] Cd Length: 400 Bit Score: 76.02 E-value: 7.10e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  44 EEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRT-----QFLEIegmvvk 118
Cdd:PRK06475   2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGtgvtpKALYL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 119 kEDGRELRSFKFKDDDQSQEV----------RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLL 188
Cdd:PRK06475  76 -MDGRKARPLLAMQLGDLARKrwhhpyivchRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETV 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 189 -AQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGL--------GFYPNGQPFQKKVNYIYGKGIRAGYvPVSTTKVYWFI 259
Cdd:PRK06475 155 sAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTlaadalpaSFLSAMPEHKAVSAWLGNKAHFIAY-PVKGGKFFNFV 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 260 CF----NSPSLGPKITDPAILkkqaKELVSTWPEDLQNLIDLTpDETiSRTPLV----DRWLWPgiappaskGRVVLVGD 331
Cdd:PRK06475 234 AItggeNPGEVWSKTGDKAHL----KSIYADWNKPVLQILAAI-DEW-TYWPLFemadAQFVGP--------DRTIFLGD 299

                        330       340
                 ....*....|....*....|....*..
gi 330254043 332 AWHPMTPNLGQGACCALEDSVVLANKL 358
Cdd:PRK06475 300 ASHAVTPFAAQGAAMAIEDAAALAEAL 326

PRK07045

putative monooxygenase; Reviewed

47-380

2.66e-14

putative monooxygenase; Reviewed

Pssm-ID: 136171 [Multi-domain] Cd Length: 388 Bit Score: 74.17 E-value: 2.66e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRV------LDAISVGPQLRTQFLEIegmvvkKE 120
Cdd:PRK07045   8 VLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVvramglLDDVFAAGGLRRDAMRL------YH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 121 DGRELRSFKFKDDDQSQEVRAVE----RRVLLETLaSQLPPQTIRFSSKLESIQSNANGD-TLLQLGDGTRLLAQIVIGC 195
Cdd:PRK07045  82 DKELIASLDYRSASALGYFILIPceqlRRLLLAKL-DGLPNVRLRFETSIERIERDADGTvTSVTLSDGERVAPTVLVGA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 196 DGIRSKV--------ATWMGFSEPKYVGHCAYrglgfypngQPFQKKVNYIY--GKGIRAGYVPVSTTKVYWFICFNSPS 265
Cdd:PRK07045 161 DGARSMIrddvlrmpAERVPYATPMAFGTIAL---------TDSVRECNRLYvdSNQGLAYFYPIGDQATRLVVSFPADE 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 266 LGPKITDP--AILKKQAKELVSTWPEDLQNLIDLTpdetiSRTPLV-------DRWlwpgiappaSKGRVVLVGDAWHPM 336
Cdd:PRK07045 232 MQGYLADTtrTKLLARLNEFVGDESADAMAAIGAG-----TAFPLIplgrmnlDRY---------HKRNVVLLGDAAHSI 297

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 330254043 337 TPNLGQGACCALEDSVVLANKLANAINGGTeSIEVAMESYGSER 380
Cdd:PRK07045 298 HPITGQGMNLAIEDAGELGACLDLHLSGQI-ALADALERFERIR 340

FixC

COG0644

Dehydrogenase (flavoprotein) [Energy production and conversion];

52-387

3.69e-14

Dehydrogenase (flavoprotein) [Energy production and conversion];

Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 72.31 E-value: 3.69e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  52 AGIGGLATAVSLHRLGIRSVVLEQAESLR----TGGtsltLFKNGWRVLDAISVGPQLRTqflEIEGMVVKKEDGRELRS 127
Cdd:COG0644    1 AGPAGSAAARRLARAGLSVLLLEKGSFPGdkicGGG----LLPRALEELEPLGLDEPLER---PVRGARFYSPGGKSVEL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 128 fkfkdDDQSQEVRAVERRVLLETLASQLPPQ--TIRFSSKLESIQSNaNGDTLLQLGDGTRLLAQIVIGCDGIRSKVATW 205
Cdd:COG0644   74 -----PPGRGGGYVVDRARFDRWLAEQAEEAgaEVRTGTRVTDVLRD-DGRVVVRTGDGEEIRADYVVDADGARSLLARK 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 206 MGF----SEPKYVGHcAYRGLGFYPNGQPFQK-KVNYIYGKGIRAGYvpvsttkvYWFICFNspslgpkitdpailkkqa 280
Cdd:COG0644  148 LGLkrrsDEPQDYAL-AIKEHWELPPLEGVDPgAVEFFFGEGAPGGY--------GWVFPLG------------------ 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 281 kelvstwpedlqnlidltpDETISR-TPLVdrwlwpGIAPPASKGRVVLVGDAW---HPMTpnlGQGACCALEDSVVLAN 356
Cdd:COG0644  201 -------------------DGRVSVgIPLG------GPRPRLVGDGVLLVGDAAgfvDPLT---GEGIHLAMKSGRLAAE 252

                        330       340       350
                 ....*....|....*....|....*....|.
gi 330254043 357 KLANAINGGTESIEvAMESYgSERWSRAFPL 387
Cdd:COG0644  253 AIAEALEGGDFSAE-ALAEY-ERRLRELLKA 281

Ubi-OHases

TIGR01988

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...

47-410

6.54e-13

Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 69.92 E-value: 6.54e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLR-------------TGGTSLTLFKNG-WRVLDAISVGPqlrtqfleI 112
Cdd:TIGR01988   2 IVIVGGGMVGLALALALARSGLKVALIEATPLPApadpgfdnrvsalSAASIRLLEKLGvWDKIEPARAQP--------I 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  113 EGMVVKkeDGRELRSFKFKDDDQSQEVRA--VERRVLLETL---ASQLPPQTIRFSSKLESIQSNANGdTLLQLGDGTRL 187
Cdd:TIGR01988  74 RDIHVS--DGGSFGALRFDADEIGLEALGyvVENRVLQQALwerLQELPNVTLLCPARVVELPRHSDH-VELTLDDGQQL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  188 LAQIVIGCDGIRSKVATWMGF------------------SEPKyvGHCAY-RglgFYPNGqPFqkkvnyiygkgiraGYV 248
Cdd:TIGR01988 151 RARLLVGADGANSKVRQLAGIpttgwdygqsavvanvkhERPH--QGTAWeR---FTPTG-PL--------------ALL 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  249 PvsttkvywficfnspslgpkitdpaiLKKQAKELV-STWPEDLQNLIDLtPDETISR-------------TPLVDRWLW 314
Cdd:TIGR01988 211 P--------------------------LPDNRSSLVwTLPPEEAERLLAL-SDEEFLAelqrafgsrlgaiTLVGERHAF 263

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  315 P---GIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTE--SIEVaMESYGSERWSRAFPLTV 389
Cdd:TIGR01988 264 PlslTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDigSLRV-LQRYERRRRFDNAAMLG 342

                         410       420
                  ....*....|....*....|.
gi 330254043  390 RANLVGALLQWENPLVCSIRN 410
Cdd:TIGR01988 343 ATDGLNRLFSNDFPPLRLLRN 363

PRK05868

FAD-binding protein;

45-361

2.18e-12

FAD-binding protein;

Pssm-ID: 180297 [Multi-domain] Cd Length: 372 Bit Score: 68.09 E-value: 2.18e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  45 EKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRE 124
Cdd:PRK05868   2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 125 LrsfkFKDDDQSQEVRAVE-------RRVLLETLASQLPPQT-IRFSSKLESIQSNANGDTLLQLGDGTRLLaQIVIGCD 196
Cdd:PRK05868  82 L----FRDTESTPTGGPVNspdiellRDDLVELLYGATQPSVeYLFDDSISTLQDDGDSVRVTFERAAAREF-DLVIGAD 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 197 GIRSKVATWMGFSEPKYVGHCA-YRGLGFYPNGQPFQKKVNYIYGKGIRAG-YVPVSTTKVYWFICFNSPSLGPKITDPa 274
Cdd:PRK05868 157 GLHSNVRRLVFGPEEQFVKRLGtHAAIFTVPNFLELDYWQTWHYGDSTMAGvYSARNNTEARAALAFMDTELRIDYRDT- 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 275 ilKKQAKELVSTWPED------LQNLIDLTPD---ETISRTpLVDRWlwpgiappaSKGRVVLVGDAWHPMTPNLGQGAC 345
Cdd:PRK05868 236 --EAQFAELQRRMAEDgwvraqLLHYMRSAPDfyfDEMSQI-LMDRW---------SRGRVALVGDAGYCCSPLSGQGTS 303

                        330
                 ....*....|....*.
gi 330254043 346 CALEDSVVLANKLANA 361
Cdd:PRK05868 304 VALLGAYILAGELKAA 319

PRK08132

FAD-dependent oxidoreductase; Provisional

37-207

4.56e-12

FAD-dependent oxidoreductase; Provisional

Pssm-ID: 236158 [Multi-domain] Cd Length: 547 Bit Score: 67.97 E-value: 4.56e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  37 QTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGpqlrtqfleiEGMV 116
Cdd:PRK08132  16 QDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCG----------ERMV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 117 VKKEDGRELRSFkFKDD---------DQSQEVRA--------VErRVLLEtLASQLPPQTIRFSSKLESIQSNANGDTL- 178
Cdd:PRK08132  86 DKGVSWNVGKVF-LRDEevyrfdllpEPGHRRPAfinlqqyyVE-GYLVE-RAQALPNIDLRWKNKVTGLEQHDDGVTLt 162

                        170       180       190
                 ....*....|....*....|....*....|
gi 330254043 179 LQLGDGT-RLLAQIVIGCDGIRSKVATWMG 207
Cdd:PRK08132 163 VETPDGPyTLEADWVIACDGARSPLREMLG 192

GG-red-SF

TIGR02032

geranylgeranyl reductase family; This model represents a subfamily which includes ...

47-332

4.73e-11

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]

Pssm-ID: 273936 [Multi-domain] Cd Length: 295 Bit Score: 63.49 E-value: 4.73e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLR----TGGTSltlfKNGWRVLDAISVGPQLRTQfleIEGMVVKKEDG 122
Cdd:TIGR02032   3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRykpcGGALS----PRALEELDLPGELIVNLVR---GARFFSPNGDS 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  123 RELRSFKFkdddqsqEVRAVERRVLLETLASQLPPQ--TIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIRS 200
Cdd:TIGR02032  76 VEIPIETE-------LAYVIDRDAFDEQLAERAQEAgaELRLGTRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRS 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  201 KVATWMGFSEPKYVGHCAYRglGFYP-NGQPFQKKVNYIYgkgIRAGYVPVSttkvYWFIcFnspslgPKITDPA---IL 276
Cdd:TIGR02032 149 IVAKKLGLKKEPREYGVAAR--AEVEmPDEEVDEDFVEVY---IDRGIVPGG----YGWV-F------PKGDGTAnvgVG 212

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  277 KKQAKELVsTWPEDLQNLIDLTPDetISRTPLVDR--WLWP--GIAPPASKGRVVLVGDA 332
Cdd:TIGR02032 213 SRSAEEGE-DPKKYLKDFLARRPE--LKDAETVEVcgALIPigRPDEKLVRGNVLLVGDA 269

PRK07236

hypothetical protein; Provisional

46-222

1.15e-09

hypothetical protein; Provisional

Pssm-ID: 235980 [Multi-domain] Cd Length: 386 Bit Score: 59.94 E-value: 1.15e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAES-LRTGGTSLTLFKngwRVLDAIS-VGPQLRTQF-LEIEGMVVKKEDG 122
Cdd:PRK07236   8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTeLDGRGAGIVLQP---ELLRALAeAGVALPADIgVPSRERIYLDRDG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 123 RELRSFkfkDDDQSQevraVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTlLQLGDGTRLLAQIVIGCDGIRSKV 202
Cdd:PRK07236  85 RVVQRR---PMPQTQ----TSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVT-ARFADGRRETADLLVGADGGRSTV 156

                        170       180
                 ....*....|....*....|.
gi 330254043 203 -ATWMGFSEPKYVGHCAYRGL 222
Cdd:PRK07236 157 rAQLLPDVRPTYAGYVAWRGL 177

PTZ00367

squalene epoxidase; Provisional

47-399

2.26e-09

squalene epoxidase; Provisional

Pssm-ID: 240384 [Multi-domain] Cd Length: 567 Bit Score: 59.48 E-value: 2.26e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQ----------AESLRTGGTsltlfkngwRVLDAISVGPQLRTQFLEIEGMV 116
Cdd:PTZ00367  36 VIIVGGSIAGPVLAKALSKQGRKVLMLERdlfskpdrivGELLQPGGV---------NALKELGMEECAEGIGMPCFGYV 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 117 VKKEDGREL----------RSFKFKD----------DDQSQEVRAVERRV---LLETLASQLPPQTIRF--SSKLESIQS 171
Cdd:PTZ00367 107 VFDHKGKQVklpygagasgVSFHFGDfvqnlrshvfHNCQDNVTMLEGTVnslLEEGPGFSERAYGVEYteAEKYDVPEN 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 172 NANGDTLLQLGDGTRLL----AQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGY 247
Cdd:PTZ00367 187 PFREDPPSANPSATTVRkvatAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 248 VPVSTTKVYWFICFNSPSLgPKitdpaiLKKQAKELVS----TWPEDLQNLIDLTPDETISRTPLVDRWLWPgiAPPASK 323
Cdd:PTZ00367 267 YRLDDNELRVLVDYNKPTL-PS------LEEQSEWLIEdvapHLPENMRESFIRASKDTKRIRSMPNARYPP--AFPSIK 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 324 GrVVLVGDAW---HPMTpnlGQGACCALEDSVVLANKLA----------NAINGGTESIEVAMESYGSERWSRAFPLTVR 390
Cdd:PTZ00367 338 G-YVGIGDHAnqrHPLT---GGGMTCCFSDCIRLAKSLTgikslrsidqNEMAEIEDAIQAAILSYARNRKTHASTINIL 413


                 ....*....
gi 330254043 391 ANLVGALLQ 399
Cdd:PTZ00367 414 SWALYSVFS 422

ubiF

PRK08020

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

47-207

4.65e-09

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Pssm-ID: 181199 [Multi-domain] Cd Length: 391 Bit Score: 58.07 E-value: 4.65e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAE----------SLRT---GGTSLTLFK--NGWRVLDAISVGPQLRTQFLE 111
Cdd:PRK08020   8 IAIVGGGMVGAALALGLAQHGFSVAVLEHAApapfdadsqpDVRIsaiSAASVALLKglGVWDAVQAMRSHPYRRLETWE 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 112 IEGMVVkkedgrelrSFKFKDDDQSQEVRAVERRVLLETLASQL---PPQTIRFSSKLESIQSnANGDTLLQLGDGTRLL 188
Cdd:PRK08020  88 WETAHV---------VFDAAELKLPELGYMVENRVLQLALWQALeahPNVTLRCPASLQALQR-DDDGWELTLADGEEIQ 157

                        170
                 ....*....|....*....
gi 330254043 189 AQIVIGCDGIRSKVATWMG 207
Cdd:PRK08020 158 AKLVIGADGANSQVRQMAG 176

PRK07364

FAD-dependent hydroxylase;

47-404

3.09e-08

FAD-dependent hydroxylase;

Pssm-ID: 236001 [Multi-domain] Cd Length: 415 Bit Score: 55.41 E-value: 3.09e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQ--AESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEgmVVKKEDGRE 124
Cdd:PRK07364  21 VAIVGGGIVGLTLAAALKDSGLRIALIEAqpAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFR--QIRLSDADY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 125 LRSFKFKDDD-QSQEVRAV-ERRVLLETLASQL---PPQTIRFSSKLESIQSNANGDTL-LQLGDGTRLL-AQIVIGCDG 197
Cdd:PRK07364  99 PGVVKFQPTDlGTEALGYVgEHQVLLEALQEFLqscPNITWLCPAEVVSVEYQQDAATVtLEIEGKQQTLqSKLVVAADG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 198 IRSKVATWMGFSEP--KYVGHC--------------AYRglGFYPNGqPFqkkvnyiygkGIRAgyVPVSTTKVYWficf 261
Cdd:PRK07364 179 ARSPIRQAAGIKTKgwKYWQSCvtatvkheaphndiAYE--RFWPSG-PF----------AILP--LPGNRCQIVW---- 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 262 nspslgpkiTDPailKKQAKELVSTWPED-LQNLIDLTPDETISRTPLVDRWLWPG--------IAPpaskgRVVLVGDA 332
Cdd:PRK07364 240 ---------TAP---HAQAKALLALPEAEfLAELQQRYGDQLGKLELLGDRFLFPVqlmqsdryVQH-----RLALVGDA 302

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 333 WHPMTPNLGQGACCALEDSVVLANKLANAINGGTE--SIEVaMESYGSERW------------------SRAFPLTVRAN 392
Cdd:PRK07364 303 AHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDigSLAV-LKRYERWRKrenwlilgftdlldrlfsNQWWPLVVVRR 381

                        410
                 ....*....|..
gi 330254043 393 LVGALLQWENPL 404
Cdd:PRK07364 382 LGLWLLRHVPPL 393

PRK07608

UbiH/UbiF family hydroxylase;

47-361

5.42e-08

UbiH/UbiF family hydroxylase;

Pssm-ID: 181057 [Multi-domain] Cd Length: 388 Bit Score: 54.57 E-value: 5.42e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGtsltlfkNGW--RVLdAISVGPQlrtQFLE------------- 111
Cdd:PRK07608   8 VVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPAD-------DAWdsRVY-AISPSSQ---AFLErlgvwqaldaarl 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 112 --IEGMVVKKEDGRELRsFKFKDDDQSQ-----EVRAVErRVLLETLASQ-----LPPQTIRFSSklesiqsnANGDTLL 179
Cdd:PRK07608  77 apVYDMRVFGDAHARLH-FSAYQAGVPQlawivESSLIE-RALWAALRFQpnltwFPARAQGLEV--------DPDAATL 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 180 QLGDGTRLLAQIVIGCDGIRSKVATWMGFSepkyVGHCAYRGLGFYPN---GQPFQKkvnyiygkgiragyvpvstTKVY 256
Cdd:PRK07608 147 TLADGQVLRADLVVGADGAHSWVRSQAGIK----AERRPYRQTGVVANfkaERPHRG-------------------TAYQ 203

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 257 WFicfnspslgpkiTDPAILK------KQAKELVSTWPEDLQNLIDLTPDETISR---------------TPL------- 308
Cdd:PRK07608 204 WF------------RDDGILAllplpdGHVSMVWSARTAHADELLALSPEALAARverasggrlgrlecvTPAagfplrl 271

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 330254043 309 --VDRWlwpgIAPpaskgRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANA 361
Cdd:PRK07608 272 qrVDRL----VAP-----RVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGR 317

HemY

COG1232

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...

46-95

6.18e-08

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis

Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 54.45 E-value: 6.18e-08

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGGTSLTLFKNGWRV 95
Cdd:COG1232    3 RVAVIGGGIAGLTAAYRLAKAGHEVTVLEASD--RVGGLIRTVEVDGFRI 50

CzcO

COG2072

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...

39-94

1.72e-07

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];

Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 52.94 E-value: 1.72e-07

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 330254043  39 NGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLrtGGTsltlfkngWR 94
Cdd:COG2072    1 TAATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDV--GGT--------WR 46

PRK06185

FAD-dependent oxidoreductase;

47-420

3.04e-07

FAD-dependent oxidoreductase;

Pssm-ID: 235729 [Multi-domain] Cd Length: 407 Bit Score: 52.17 E-value: 3.04e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQ-AESLRT--GGT--SLTLfkngwRVLDAISVG------PQLRTQFLEIEgm 115
Cdd:PRK06185   9 CCIVGGGPAGMMLGLLLARAGVDVTVLEKhADFLRDfrGDTvhPSTL-----ELMDELGLLerflelPHQKVRTLRFE-- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 116 vvkkEDGRELRSFKFKDDDQSQEVRA-VERRVLLETL---ASQLPPQTIRFSSKLESIQSNAN---GDTLLQLGDGTRLL 188
Cdd:PRK06185  82 ----IGGRTVTLADFSRLPTPYPYIAmMPQWDFLDFLaeeASAYPNFTLRMGAEVTGLIEEGGrvtGVRARTPDGPGEIR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 189 AQIVIGCDGIRSKVATWMGFS--------------------EPKYVGHCAYRG--LGFYPNGQPFQkkvnyiygkgirAG 246
Cdd:PRK06185 158 ADLVVGADGRHSRVRALAGLEvrefgapmdvlwfrlprepdDPESLMGRFGPGqgLIMIDRGDYWQ------------CG 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 247 YVpvsttkvywficfnspslGPKITDPAI-------LKKQAKELVSTWPEDLQNLIDLtpDET------ISRtplVDRWL 313
Cdd:PRK06185 226 YV------------------IPKGGYAALraagleaFRERVAELAPELADRVAELKSW--DDVklldvrVDR---LRRWH 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 314 WPGiappaskgrVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTESiEVAMESYGSERW-----SRAFPLT 388
Cdd:PRK06185 283 RPG---------LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVS-DRDLAAVQRRREfptrvTQALQRR 352

                        410       420       430
                 ....*....|....*....|....*....|..
gi 330254043 389 VRANLVGALLQWENPLvcsirnniVIPKLLRL 420
Cdd:PRK06185 353 IQRRLLAPALAGRGPL--------GPPLLLRL 376

YobN

COG1231

Monoamine oxidase [Amino acid transport and metabolism];

46-83

2.21e-06

Monoamine oxidase [Amino acid transport and metabolism];

Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 49.53 E-value: 2.21e-06

                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGG 83
Cdd:COG1231    9 DVVIVGAGLAGLAAARELRKAGLDVTVLEARD--RVGG 44

COG1233

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...

46-83

2.41e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 49.46 E-value: 2.41e-06

                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLrtGG 83
Cdd:COG1233    5 DVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTP--GG 40

NAD_binding_8

pfam13450

NAD(P)-binding Rossmann-like domain;

49-95

2.59e-06

NAD(P)-binding Rossmann-like domain;

Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 44.83 E-value: 2.59e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 330254043   49 IVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGGTSLTLFKNGWRV 95
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRD--RLGGNAYSYRVPGYVF 45

PRK07494

UbiH/UbiF family hydroxylase;

47-202

1.33e-05

UbiH/UbiF family hydroxylase;

Pssm-ID: 181001 [Multi-domain] Cd Length: 388 Bit Score: 47.20 E-value: 1.33e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGiRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRELR 126
Cdd:PRK07494  10 IAVIGGGPAGLAAAIALARAG-ASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLIR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 127 S--FKFKDDDQSQEVRA--VERRVLLETLASQLP--PQTIRFSSKLESIQSNANGdTLLQLGDGTRLLAQIVIGCDGIRS 200
Cdd:PRK07494  89 ApeVRFRAAEIGEDAFGynIPNWLLNRALEARVAelPNITRFGDEAESVRPREDE-VTVTLADGTTLSARLVVGADGRNS 167


                 ..
gi 330254043 201 KV 202
Cdd:PRK07494 168 PV 169

SdhA

COG1053

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...

47-85

1.74e-05

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle

Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 46.75 E-value: 1.74e-05

                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGGTS 85
Cdd:COG1053    6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVP--PRGGHT 42

Rubrum_tdh

cd05304

Rubrum transdehydrogenase NAD-binding and catalytic domains; Transhydrogenases found in ...

46-88

3.22e-05

Pssm-ID: 240629 [Multi-domain] Cd Length: 363 Bit Score: 45.86 E-value: 3.22e-05

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 330254043  46 KVVIVGAGIGGL---ATAvslHRLG-------IRSVVLEQAESLrtGGTSLTL 88
Cdd:cd05304  168 KVLVIGAGVAGLqaiATA---KRLGavveafdVRPAAKEQVESL--GAKFVEV 215

PRK08013

oxidoreductase; Provisional

43-358

3.69e-05

oxidoreductase; Provisional

Pssm-ID: 236139 [Multi-domain] Cd Length: 400 Bit Score: 45.81 E-value: 3.69e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  43 QEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQ--AESLRTGGtSLTLfkngwRVlDAISVGPQLRTQFLEI-------- 112
Cdd:PRK08013   2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQrvPEPLAADA-PPAL-----RV-SAINAASEKLLTRLGVwqdilarr 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 113 ----EGMVVKKEDgrelrSF---KFKDDDQ--SQEVRAVERRVLLETL---ASQLPPQTIRFSSKLESIQSNANgDTLLQ 180
Cdd:PRK08013  75 ascyHGMEVWDKD-----SFgriAFDDQSMgySHLGHIIENSVIHYALwqkAQQSSDITLLAPAELQQVAWGEN-EAFLT 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 181 LGDGTRLLAQIVIGCDG----IRSKVATWMGFSEpkYvGHCAYrgLGFYPNGQPFQKKVNYI-YGKGIRAgYVPVS---T 252
Cdd:PRK08013 149 LKDGSMLTARLVVGADGanswLRNKADIPLTFWD--Y-QHHAL--VATIRTEEPHDAVARQVfHGDGILA-FLPLSdphL 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 253 TKVYWficfnspSLGPkitdpailkKQAKELVSTWPEDLQNLIDLTPDETISRTPLV-DRWLWPGIAPPA---SKGRVVL 328
Cdd:PRK08013 223 CSIVW-------SLSP---------EEAQRMQQAPEEEFNRALAIAFDNRLGLCELEsERQVFPLTGRYArqfAAHRLAL 286

                        330       340       350
                 ....*....|....*....|....*....|
gi 330254043 329 VGDAWHPMTPNLGQGACCALEDSVVLANKL 358
Cdd:PRK08013 287 VGDAAHTIHPLAGQGVNLGFMDAAELIAEL 316

FAD_binding_2

pfam00890

FAD binding domain; This family includes members that bind FAD. This family includes the ...

47-111

3.98e-05

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.

Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 45.74 E-value: 3.98e-05

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 330254043   47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESlrTGGTslTLFKNGWrvLDAISVGPQLRTQFLE 111
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQP--FGGA--TAWSSGG--IDALGNPPQGGIDSPE 60

DadA

COG0665

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];

46-83

3.99e-05

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];

Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 45.67 E-value: 3.99e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAE-----SLRTGG 83
Cdd:COG0665    4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRpgsgaSGRNAG 46

COG3349

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...

46-96

9.01e-05

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];

Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 44.46 E-value: 9.01e-05

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAE-------SLRTGGTSLTLfKNGWRVL 96
Cdd:COG3349    5 RVVVVGGGLAGLAAAVELAEAGFRVTLLEARPrlggrarSFPDPDTGLPI-DNGQHVL 61

DAO

pfam01266

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...

46-85

1.24e-04

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.

Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 43.93 E-value: 1.24e-04

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 330254043   46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTS 85
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASG 40

PRK06834

hypothetical protein; Provisional

323-380

1.26e-04

hypothetical protein; Provisional

Pssm-ID: 235870 [Multi-domain] Cd Length: 488 Bit Score: 44.24 E-value: 1.26e-04

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 330254043 323 KGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGgtESIEVAMESYGSER 380
Cdd:PRK06834 264 DGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG--TSPESLLDTYHAER 319

PRK09126

FAD-dependent hydroxylase;

47-197

1.42e-04

FAD-dependent hydroxylase;

Pssm-ID: 236385 [Multi-domain] Cd Length: 392 Bit Score: 43.78 E-value: 1.42e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQ--AESLR-----------TGGTSLTLFKNG-WRVLDAISVGPqLRTqflei 112
Cdd:PRK09126   6 IVVVGAGPAGLSFARSLAGSGLKVTLIERqpLAALAdpafdgreialTHASREILQRLGaWDRIPEDEISP-LRD----- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 113 egmvVKKEDGRELRSFKFKDDDQSQEVRAVE------RRVLLETlASQLPPQTIRFSSKLESIQSNANGDTlLQLGDGTR 186
Cdd:PRK09126  80 ----AKVLNGRSPFALTFDARGRGADALGYLvpnhliRRAAYEA-VSQQDGIELLTGTRVTAVRTDDDGAQ-VTLANGRR 153

                        170
                 ....*....|.
gi 330254043 187 LLAQIVIGCDG 197
Cdd:PRK09126 154 LTARLLVAADS 164

PRK12842

putative succinate dehydrogenase; Reviewed

47-93

1.85e-04

putative succinate dehydrogenase; Reviewed

Pssm-ID: 237224 [Multi-domain] Cd Length: 574 Bit Score: 43.91 E-value: 1.85e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLrtGGTslTLFKNGW 93
Cdd:PRK12842  12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF--GGT--TAFSGGV 54

PRK08850

2-octaprenyl-6-methoxyphenol hydroxylase; Validated

43-409

2.03e-04

2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Pssm-ID: 236341 [Multi-domain] Cd Length: 405 Bit Score: 43.22 E-value: 2.03e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  43 QEEKVVIVGAGIGGLATAVSLHRLGIRSVVLE---------QAESLRTGGTSL---TLFKN--GWRVLDAISVGPqlrtq 108
Cdd:PRK08850   3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEgqlpeealnELPDVRVSALSRsseHILRNlgAWQGIEARRAAP----- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 109 fleIEGMVVKKEDGRELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQ---TIRFSSKLESIQSNANGdTLLQLGDGT 185
Cdd:PRK08850  78 ---YIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQdnvTLLMPARCQSIAVGESE-AWLTLDNGQ 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 186 RLLAQIVIGCDGIRSKVATWMGFSEPKY-VGHCAYrgLGFYPNGQPFQKKVNYIYGKGIRAGYVPVST---TKVYWficf 261
Cdd:PRK08850 154 ALTAKLVVGADGANSWLRRQMDIPLTHWdYGHSAL--VANVRTVDPHNSVARQIFTPQGPLAFLPMSEpnmSSIVW---- 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 262 nspslgpkITDPAilkkQAKELVSTWPEDLQNLIDLTPDETISRTPLV-DRWLWPGIAPPA---SKGRVVLVGDAWHPMT 337
Cdd:PRK08850 228 --------STEPL----RAEALLAMSDEQFNKALTAEFDNRLGLCEVVgERQAFPLKMRYArdfVRERVALVGDAAHTIH 295

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 330254043 338 PNLGQGACCALEDSVVLANKLANAINGGtESIEVAMESYGSERWSRAFPLTVRANLVG--ALLQWENPLVCSIR 409
Cdd:PRK08850 296 PLAGQGVNLGLLDAASLAQEILALWQQG-RDIGLKRNLRGYERWRKAEAAKMIAAMQGfrDLFSGSNPAKKLVR 368

PRK08244

monooxygenase;

47-384

2.88e-04

monooxygenase;

Pssm-ID: 236199 [Multi-domain] Cd Length: 493 Bit Score: 43.19 E-value: 2.88e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISvgpqLRTQFLEIegmvvkkedGRELR 126
Cdd:PRK08244   5 VIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRG----LLERFLEK---------GRKLP 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 127 SFKFKDDDQSQEVRAVERRV-------------LLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLL-AQIV 192
Cdd:PRK08244  72 SGHFAGLDTRLDFSALDTSSnytlflpqaetekVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLtSSYV 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 193 IGCDGIRSKVATWMGFSEP-KYVGHCAYRGLGFYPNGQPfqkkvNYIYGKGIRAGYVPVS--TTKVYWFIcfnspslgpk 269
Cdd:PRK08244 152 VGADGAGSIVRKQAGIAFPgTDATFTAMLGDVVLKDPPP-----SSVLSLCTREGGVMIVplSGGIYRVL---------- 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 270 ITDPAILKKQAKELVSTwpEDLQnlidltpdETISRTPLVDRwlwpGIAPP--------ASK-------GRVVLVGDAWH 334
Cdd:PRK08244 217 IIDPERPQVPKDEPVTL--EELK--------TSLIRICGTDF----GLNDPvwmsrfgnATRqaeryrsGRIFLAGDAAH 282

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 330254043 335 PMTPNLGQGACCALEDSVVLANKLANAINGGTESIevAMESYGSER--WSRA 384
Cdd:PRK08244 283 IHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDW--LLDSYHAERhpVGTA 332

crtI_fam

TIGR02734

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...

47-103

4.19e-04

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]

Pssm-ID: 274273 [Multi-domain] Cd Length: 495 Bit Score: 42.65 E-value: 4.19e-04

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 330254043   47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLrtGGTSLTLFKNGWRvLDAisvGP 103
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP--GGRAGVLEDDGFR-FDT---GP 51

COG3919

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];

46-73

5.91e-04

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];

Pssm-ID: 443124 [Multi-domain] Cd Length: 382 Bit Score: 41.84 E-value: 5.91e-04

                         10        20
                 ....*....|....*....|....*...
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVL 73
Cdd:COG3919    7 RVVVLGGDINALAVARSLGEAGVRVIVV 34

COQ6

TIGR01989

ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase ...

47-409

8.52e-04

ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

Pssm-ID: 273914 [Multi-domain] Cd Length: 437 Bit Score: 41.67 E-value: 8.52e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043   47 VVIVGAGIGGLATAVSL------HRLGIRSVVLEQAESLR-----------------TGGTSLTLFKNgwrvLDAISVGP 103
Cdd:TIGR01989   3 VVIVGGGPVGLALAAALgnnpltKDLKVLLLDAVDNPKLKsrnyekpdgpysnrvssITPASISFFKK----IGAWDHIQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  104 QLRTQFleIEGMVVKkeDGRELRSFKFKDDDQSQEVR-AVERRVLLETLASQL------------PPQTIRFSSKLESIQ 170
Cdd:TIGR01989  79 SDRIQP--FGRMQVW--DGCSLALIRFDRDNGKEDMAcIIENDNIQNSLYNRLqeyngdnvkilnPARLISVTIPSKYPN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  171 SNANGdTLLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEP--KYVGH---------------CAYRGlgFYPNGqPFqk 233
Cdd:TIGR01989 155 DNSNW-VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTgwNYNQHavvatlkleeatendVAWQR--FLPTG-PI-- 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  234 kvnyiygkgiraGYVPVSTTkVYWFICFNSPslgpkitdpailkKQAKELVSTWPEDLQNLID---LTPDETISRTPLVD 310
Cdd:TIGR01989 229 ------------ALLPLPDN-NSTLVWSTSP-------------EEALRLLSLPPEDFVDALNaafDLGYSDHPYSYLLD 282

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  311 R----------WLWPG-----IAPPASKG----------------------RVVLVGDAWHPMTPNLGQGACCALEDSVV 353
Cdd:TIGR01989 283 YameklnedigFRTEGskscfQVPPRVIGvvdksraafplglghadeyvtkRVALVGDAAHRVHPLAGQGVNLGFGDVAS 362

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 330254043  354 LANKLANAINGGTE--SIEvAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIR 409
Cdd:TIGR01989 363 LVKALAEAVSVGADigSIS-SLKPYERERYAKNVVLLGLVDKLHKLYATDFPPVVALR 419

PntA

COG3288

NAD/NADP transhydrogenase alpha subunit [Energy production and conversion];

46-79

1.24e-03

NAD/NADP transhydrogenase alpha subunit [Energy production and conversion];

Pssm-ID: 442518 [Multi-domain] Cd Length: 359 Bit Score: 40.76 E-value: 1.24e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 330254043  46 KVVIVGAGIGGL---ATAvslHRLG-------IRSVVLEQAESL 79
Cdd:COG3288  166 GVLVVGAGVAGLqaiATA---KRLGavveaydVRPAVKEQVESL 206

TrxB

COG0492

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];

46-148

1.52e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 40.49 E-value: 1.52e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLeqaESLRTGGtSLTLFKNGWRVL---DAISvGPQLRTQFLE---------IE 113
Cdd:COG0492    2 DVVIIGAGPAGLTAAIYAARAGLKTLVI---EGGEPGG-QLATTKEIENYPgfpEGIS-GPELAERLREqaerfgaeiLL 76

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 330254043 114 GMV--VKKEDGRelrsFKFKDDDqSQEVRAveRRVLL 148
Cdd:COG0492   77 EEVtsVDKDDGP----FRVTTDD-GTEYEA--KAVII 106

PLN02328

lysine-specific histone demethylase 1 homolog

29-107

1.68e-03

lysine-specific histone demethylase 1 homolog

Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 40.75 E-value: 1.68e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  29 VCLALTNAQ--TNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGGTSLTLFKNGWRVLDAISVGPQLR 106
Cdd:PLN02328 221 VAPVIKEAQlrSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA--RPGGRVKTMKMKGDGVVAAADLGGSVL 298


                 .
gi 330254043 107 T 107
Cdd:PLN02328 299 T 299

PRK11883

protoporphyrinogen oxidase; Reviewed

46-125

1.70e-03

protoporphyrinogen oxidase; Reviewed

Pssm-ID: 237009 [Multi-domain] Cd Length: 451 Bit Score: 40.60 E-value: 1.70e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLG--IRSVVLEQAEslRTGGTSLTLFKNGWRvldaISVGPqlrtqfleiEGMVVKKEDGR 123
Cdd:PRK11883   2 KVAIIGGGITGLSAAYRLHKKGpdADITLLEASD--RLGGKIQTVRKDGFP----IELGP---------ESFLARKPSAP 66


                 ..
gi 330254043 124 EL 125
Cdd:PRK11883  67 AL 68

PLN03000

amine oxidase

44-132

1.76e-03

amine oxidase

Pssm-ID: 178578 [Multi-domain] Cd Length: 881 Bit Score: 40.77 E-value: 1.76e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  44 EEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGR 123
Cdd:PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK--RPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGS 261


                 ....*....
gi 330254043 124 ELrsFKFKD 132
Cdd:PLN03000 262 SL--YKVRD 268

PRK06184

hypothetical protein; Provisional

47-380

2.66e-03

hypothetical protein; Provisional

Pssm-ID: 235728 [Multi-domain] Cd Length: 502 Bit Score: 39.97 E-value: 2.66e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGT-------SLTLFKN-GW--RVLDAISVGPQLRtqfleiegmv 116
Cdd:PRK06184   6 VLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRgkgiqprTQEVFDDlGVldRVVAAGGLYPPMR---------- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 117 VKKEDGRELRSFKFKDDDQSQEV---------RAVERRVLLETLAsQLPPQtIRFSSKLESIQSNANGDT--LLQLGDGT 185
Cdd:PRK06184  76 IYRDDGSVAESDMFAHLEPTPDEpyplplmvpQWRTERILRERLA-ELGHR-VEFGCELVGFEQDADGVTarVAGPAGEE 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 186 RLLAQIVIGCDGIRSKV--ATWMGF------SEPKYVGHCAYRGLGfypngqpfqKKVNYIY--GKGIRAGYVPVSTTkv 255
Cdd:PRK06184 154 TVRARYLVGADGGRSFVrkALGIGFpgetlgIDRMLVADVSLTGLD---------RDAWHQWpdGDMGMIALCPLPGT-- 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330254043 256 ywficfNSPSLGPKITdpailkkqAKELVSTWPEDLQNLI-DLT--PDETISRTP----------LVDRWlwpgiappaS 322
Cdd:PRK06184 223 ------DLFQIQAPLP--------PGGEPDLSADGLTALLaERTgrTDIRLHSVTwasafrmnarLADRY---------R 279

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 330254043 323 KGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTESIevaMESYGSER 380
Cdd:PRK06184 280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEAL---LDTYEEER 334

PRK06134

putative FAD-binding dehydrogenase; Reviewed

42-93

3.81e-03

putative FAD-binding dehydrogenase; Reviewed

Pssm-ID: 180419 [Multi-domain] Cd Length: 581 Bit Score: 39.70 E-value: 3.81e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 330254043  42 DQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQaeSLRTGGTslTLFKNGW 93
Cdd:PRK06134  10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK--DPVFGGT--TAWSGGW 57

PRK08243

4-hydroxybenzoate 3-monooxygenase; Validated

46-75

3.89e-03

4-hydroxybenzoate 3-monooxygenase; Validated

Pssm-ID: 236198 [Multi-domain] Cd Length: 392 Bit Score: 39.40 E-value: 3.89e-03

                         10        20        30
                 ....*....|....*....|....*....|
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLEQ 75
Cdd:PRK08243   4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

COG3380

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];

46-74

5.15e-03

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];

Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 38.71 E-value: 5.15e-03

                         10        20
                 ....*....|....*....|....*....
gi 330254043  46 KVVIVGAGIGGLATAVSLHRLGIRSVVLE 74
Cdd:COG3380    5 DIAIIGAGIAGLAAARALQDAGHEVTVFE 33

PRK07208

hypothetical protein; Provisional

43-94

5.31e-03

hypothetical protein; Provisional

Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 39.10 E-value: 5.31e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 330254043  43 QEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQaeSLRTGGTSLTLFKNGWR 94
Cdd:PRK07208   3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEA--DPVVGGISRTVTYKGNR 52

PLN02268

probable polyamine oxidase

47-83

5.98e-03

probable polyamine oxidase

Pssm-ID: 177909 [Multi-domain] Cd Length: 435 Bit Score: 38.90 E-value: 5.98e-03

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAEslRTGG 83
Cdd:PLN02268   3 VIVIGGGIAGIAAARALHDASFKVTLLESRD--RIGG 37

COG3573

Predicted oxidoreductase [General function prediction only];

47-83

9.96e-03

Predicted oxidoreductase [General function prediction only];

Pssm-ID: 442794 [Multi-domain] Cd Length: 551 Bit Score: 38.24 E-value: 9.96e-03

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 330254043  47 VVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGG 83
Cdd:COG3573    8 VIVVGAGLAGLVAAAELADAGRRVLLLDQEPEANLGG 44

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01