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Conserved domains on  [gi|209958753|gb|ACI99389|]
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R body protein, putative [Rhodospirillum centenum SW]

Protein Classification

RebB family R body protein( domain architecture ID 10570175)

RebB family R body protein similar to Caedibacter taeniospiralis RebB that is one of three proteins necessary for the production of R- bodies (refractile inclusion bodies), essential for the expression of the killing trait of the endosymbiont bacteria that produce them

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RebB pfam11747
Killing trait; RebB is one of three proteins necessary for the production of R- bodies, ...
 11-78 2.68e-13

Killing trait; RebB is one of three proteins necessary for the production of R- bodies, refractile inclusion bodies produced by a small number of bacterial species, essential for the expression of the killing trait of the endosymbiont bacteria that produce them for attack upon the host Paramecium. R-bodies are highly insoluble protein ribbons which coil into cylindrical structures in the cell and the genes for their synthesis and assembly are encoded on a plasmid. One of these three proteins is RebB.


:

Pssm-ID: 432045  Cd Length: 68  Bit Score: 59.66  E-value: 2.68e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209958753   11 ITDAVSQANVTILAAAPAQAMATLYQVMAQSIGLSMQNAVARQRSMAMIDTAVTTQGTSLLYSTPVAA 78
Cdd:pfam11747   1 ITDAVTQANVKVVGEAPAQAMGNLYQAMSQALGLAAHNAVAAQQQANVIAQAATTQGVALLLSIDTAA 68
 
Name Accession Description Interval E-value
RebB pfam11747
Killing trait; RebB is one of three proteins necessary for the production of R- bodies, ...
 11-78 2.68e-13

Killing trait; RebB is one of three proteins necessary for the production of R- bodies, refractile inclusion bodies produced by a small number of bacterial species, essential for the expression of the killing trait of the endosymbiont bacteria that produce them for attack upon the host Paramecium. R-bodies are highly insoluble protein ribbons which coil into cylindrical structures in the cell and the genes for their synthesis and assembly are encoded on a plasmid. One of these three proteins is RebB.


Pssm-ID: 432045  Cd Length: 68  Bit Score: 59.66  E-value: 2.68e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209958753   11 ITDAVSQANVTILAAAPAQAMATLYQVMAQSIGLSMQNAVARQRSMAMIDTAVTTQGTSLLYSTPVAA 78
Cdd:pfam11747   1 ITDAVTQANVKVVGEAPAQAMGNLYQAMSQALGLAAHNAVAAQQQANVIAQAATTQGVALLLSIDTAA 68
 
Name Accession Description Interval E-value
RebB pfam11747
Killing trait; RebB is one of three proteins necessary for the production of R- bodies, ...
 11-78 2.68e-13

Killing trait; RebB is one of three proteins necessary for the production of R- bodies, refractile inclusion bodies produced by a small number of bacterial species, essential for the expression of the killing trait of the endosymbiont bacteria that produce them for attack upon the host Paramecium. R-bodies are highly insoluble protein ribbons which coil into cylindrical structures in the cell and the genes for their synthesis and assembly are encoded on a plasmid. One of these three proteins is RebB.


Pssm-ID: 432045  Cd Length: 68  Bit Score: 59.66  E-value: 2.68e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209958753   11 ITDAVSQANVTILAAAPAQAMATLYQVMAQSIGLSMQNAVARQRSMAMIDTAVTTQGTSLLYSTPVAA 78
Cdd:pfam11747   1 ITDAVTQANVKVVGEAPAQAMGNLYQAMSQALGLAAHNAVAAQQQANVIAQAATTQGVALLLSIDTAA 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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