|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 709.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00119 34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-341 |
3.46e-128 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 372.20 E-value: 3.46e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYlyKE- 79
Cdd:COG1290 42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 156 LIAGITLVHLTFLHESGSNNPLGI----VSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNllGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQ 309
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357
|
330 340 350
....*....|....*....|....*....|..
gi 190683577 310 PVehPFIIIGQLASITYFTILLFLFPAVSALE 341
Cdd:COG1290 358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-174 |
1.18e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 1.18e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSY--LYK 78
Cdd:cd00284 25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184
|
170
....*....|....*.
gi 190683577 159 GITLVHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-172 |
1.33e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 220.72 E-value: 1.33e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLYK 78
Cdd:pfam00033 16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:pfam00033 96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175
|
170
....*....|....
gi 190683577 159 GITLVHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
204-298 |
3.25e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 63.66 E-value: 3.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 204 LAPLMALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTM 283
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 190683577 284 TFR---PLSQLLFWTLVA 298
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 709.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00119 34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 645.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00131 33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00131 193 TILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEW 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00131 273 YFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQ 352
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00131 353 VASVLYFSLFLVLMPLAGWLENKALEW 379
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 637.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00100 33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00100 193 AMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00100 273 YFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQ 352
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00100 353 LASILYFLIILILMPIASLIENNLLKW 379
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 624.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00074 34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00074 194 SIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00074 274 YFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQ 353
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00074 354 AASILYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-335 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 594.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00191 30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00191 190 SLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEW 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00191 270 YFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQ 349
|
330
....*....|....*
gi 190683577 321 LASITYFTILLFLFP 335
Cdd:MTH00191 350 ISSFLYFFLFLLLFP 364
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-334 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 583.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00156 23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00156 183 VMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEW 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00156 263 YFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQ 342
|
330
....*....|....
gi 190683577 321 LASITYFTILLFLF 334
Cdd:MTH00156 343 ILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-347 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 565.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00145 34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00145 194 SVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00145 274 YFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQ 353
|
330 340
....*....|....*....|....*..
gi 190683577 321 LASITYFTILLFLfPAVSALENKMLNY 347
Cdd:MTH00145 354 VFTVLYFLFFLIL-PLVQKLWDNILDY 379
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-346 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 561.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00034 33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00034 193 SIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEW 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00034 273 YFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQ 352
|
330 340
....*....|....*....|....*.
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLN 346
Cdd:MTH00034 353 VASVLYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-345 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 529.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00016 34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00016 194 SMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00016 274 YFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353
|
330 340
....*....|....*....|....*
gi 190683577 321 LASITYFTILLFlFPAVSALENKML 345
Cdd:MTH00016 354 IFTVFYFFYFMI-NPLLMKLWDKLL 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-346 |
1.35e-171 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 482.28 E-value: 1.35e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00053 34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00053 194 ALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00053 274 YFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQ 353
|
330 340
....*....|....*....|....*.
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLN 346
Cdd:MTH00053 354 IASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-346 |
1.10e-168 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 474.57 E-value: 1.10e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00022 32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00022 192 VIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEW 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00022 272 YFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQ 351
|
330 340
....*....|....*....|....*.
gi 190683577 321 LASITYFTILLFLFPAVSALENKMLN 346
Cdd:MTH00022 352 LLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-346 |
9.84e-163 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 459.77 E-value: 9.84e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00224 34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00224 194 TILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEW 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00224 274 YFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQ 353
|
330 340
....*....|....*....|....*.
gi 190683577 321 LASITYFTiLLFLFPAVSALENKMLN 346
Cdd:MTH00224 354 VFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-347 |
2.69e-131 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 380.05 E-value: 2.69e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00033 30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFS--PNLLGDPENFTPANPLVTPPHIKP 238
Cdd:MTH00033 190 VLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQP 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 239 EWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQPV-EHPFII 317
Cdd:MTH00033 270 EWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVL 349
|
330 340 350
....*....|....*....|....*....|
gi 190683577 318 IGQLASITYFTILLFLFPAVSALENKMLNY 347
Cdd:MTH00033 350 IGRIATIFYFGYFLVLVPLLGYLSNLFYEY 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-341 |
3.46e-128 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 372.20 E-value: 3.46e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYlyKE- 79
Cdd:COG1290 42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 156 LIAGITLVHLTFLHESGSNNPLGI----VSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNllGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTWVGSQ 309
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357
|
330 340 350
....*....|....*....|....*....|..
gi 190683577 310 PVehPFIIIGQLASITYFTILLFLFPAVSALE 341
Cdd:COG1290 358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-334 |
9.29e-114 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 334.22 E-value: 9.29e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00086 22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGI 160
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 161 TLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLApLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00086 182 VLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEW 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSkqrTMTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00086 261 YFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQ 337
|
330
....*....|....
gi 190683577 321 LASITYFTILLFLF 334
Cdd:MTH00086 338 IFSFIYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-334 |
2.26e-86 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 264.54 E-value: 2.26e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 2 GSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETW 81
Cdd:MTH00046 25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 82 NTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGIT 161
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 162 LVHLTFLHESGSNNPLGIVSD-CDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 241 YFLFAYAILRSIPNKLGGvLALAASVLILFLIPFLHKSKqrtmTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339
|
330
....*....|....
gi 190683577 321 LASITyFTILLFLF 334
Cdd:MTH00046 340 LFSVL-MVLLLFIF 352
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-174 |
1.18e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 1.18e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSY--LYK 78
Cdd:cd00284 25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184
|
170
....*....|....*.
gi 190683577 159 GITLVHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-172 |
1.33e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 220.72 E-value: 1.33e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLYK 78
Cdd:pfam00033 16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:pfam00033 96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175
|
170
....*....|....
gi 190683577 159 GITLVHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
175-322 |
2.83e-57 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 182.46 E-value: 2.83e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 175 NPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 254
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 190683577 255 KLGGVLALAASVLILFLIPFLHKSKQRTmTFRPLSQLLFWTLVANLLILTWVGSQPVEHPFIIIGQLA 322
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
226-326 |
1.23e-48 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 158.80 E-value: 1.23e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 226 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLILTW 305
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 190683577 306 VGSQPVEHPFIIIGQLASITY 326
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
56-221 |
1.11e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 153.55 E-value: 1.11e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 56 SLFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAW 133
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 134 GGFSVDNPTLTRFFALHF-LLPFLIAGITLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLAPLMALAL 212
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 190683577 213 FSPNLLGDP 221
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-177 |
1.08e-36 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 131.76 E-value: 1.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKE- 79
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLI 157
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 190683577 158 AGITLVHLTFLHESGSNNPL 177
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-177 |
6.02e-32 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 119.06 E-value: 6.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 1 FGSLLAVCLITQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKE- 79
Cdd:CHL00070 36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLI 157
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195
|
170 180
....*....|....*....|
gi 190683577 158 AGITLVHLTFLHESGSNNPL 177
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
197-298 |
7.23e-14 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 68.49 E-value: 7.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 197 ILGFIlmlAPLMALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLH 276
Cdd:CHL00058 44 ILGTI---ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115
|
90 100
....*....|....*....|....*
gi 190683577 277 K-SKQRTMTFRPLSQL--LFWTLVA 298
Cdd:CHL00058 116 NvNKFQNPFRRPVATTvfLIGTAVA 140
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
204-297 |
5.30e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 65.97 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 204 LAPLMALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTM 283
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123
|
90
....*....|....*..
gi 190683577 284 TF-RPLSQ--LLFWTLV 297
Cdd:COG5679 124 PFrRPVATavFLFGTLV 140
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
204-298 |
3.25e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 63.66 E-value: 3.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190683577 204 LAPLMALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTM 283
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 190683577 284 TFR---PLSQLLFWTLVA 298
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
|
|
| |
