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Conserved domains on  [gi|187763558|gb|ACD35656|]
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cytochrome b, partial (mitochondrion) [Buglossidium luteum]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-134 1.37e-97

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 285.01  E-value: 1.37e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-134 1.37e-97

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 285.01  E-value: 1.37e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 3.08e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.40  E-value: 3.08e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   9 PLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187763558  89 FFFICIYLHIGRGLYYGSYMN--KETWNIGVVLLILTMATAFVGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.48e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.08  E-value: 1.48e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   18 VIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 187763558   98 IGRGLYYG--SYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-134 4.62e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 155.72  E-value: 4.62e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  22 PAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLHIGRG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 187763558 102 LYYGSY-----MNketWNIGVVLLILTMATAFVGYVLP 134
Cdd:COG1290  111 FFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-134 1.37e-97

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 285.01  E-value: 1.37e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00119
cytochrome b; Provisional
 4-134 4.23e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 273.70  E-value: 4.23e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   4 LRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187763558  84 ANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00074
cytochrome b; Provisional
 1-134 1.06e-90

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 267.32  E-value: 1.06e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00100
cytochrome b; Provisional
 1-134 1.56e-90

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 266.89  E-value: 1.56e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00191
cytochrome b; Provisional
 4-134 2.23e-90

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 266.01  E-value: 2.23e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   4 LRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187763558  84 ANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00145
cytochrome b; Provisional
 1-134 1.27e-84

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 251.75  E-value: 1.27e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00034
cytochrome b; Validated
 4-134 2.44e-84

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 251.16  E-value: 2.44e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   4 LRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187763558  84 ANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00156
cytochrome b; Provisional
 11-134 4.95e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 244.69  E-value: 4.95e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  11 IKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 187763558  91 FICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00016
cytochrome b; Validated
 1-134 8.61e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 236.88  E-value: 8.61e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   1 MASLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187763558  81 NIHANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 4-134 5.10e-67

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 207.08  E-value: 5.10e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   4 LRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187763558  84 ANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 4-134 1.24e-66

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 206.09  E-value: 1.24e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   4 LRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187763558  84 ANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 3-134 1.90e-59

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 187.61  E-value: 1.90e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   3 SLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNI 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 187763558  83 HANGASFFFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 3.08e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.40  E-value: 3.08e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   9 PLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187763558  89 FFFICIYLHIGRGLYYGSYMN--KETWNIGVVLLILTMATAFVGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.48e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.08  E-value: 1.48e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558   18 VIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 187763558   98 IGRGLYYG--SYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 16-134 1.22e-48

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 159.72  E-value: 1.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  16 SSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIY 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 187763558  96 LHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-134 4.62e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 155.72  E-value: 4.62e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  22 PAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLHIGRG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 187763558 102 LYYGSY-----MNketWNIGVVLLILTMATAFVGYVLP 134
Cdd:COG1290  111 FFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 12-134 6.99e-43

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 144.31  E-value: 6.99e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  12 KIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 187763558  92 ICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 10-134 5.21e-30

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 110.46  E-value: 5.21e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  10 LIKIINSSVIDLPAPSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASF 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 187763558  90 FFICIYLHIGRGLYYGSYMNKETWNIGVVLLILTMATAFVGYVLP 134
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 33-134 5.95e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.99  E-value: 5.95e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  33 FGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLHIGRGLYYGSYMNKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 187763558 112 -TWNIGVVLLILTMATAFVGYVLP 134
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 24-134 2.26e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 72.06  E-value: 2.26e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763558  24 PSNISAWWNFGSLLGLCLATQILTGLLLAMHYTADAATAFSSVMHICKDVNYGWLIRNIHANGASFFFICIYLHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|...
gi 187763558 104 YGSYMNKE--TWNIGVVLLILTMATAFVGYVLP 134
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-134 8.98e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 56.10  E-value: 8.98e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 187763558   88 SFFFICIYLHIGRGLYYGSYMNKE--TWNIGVVLLILTMATAFVGYVLP 134
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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