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Conserved domains on  [gi|157086345|gb|ABV16023|]
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hypothetical protein CKO_04979 [Citrobacter koseri ATCC BAA-895]

Protein Classification

YhjR family protein( domain architecture ID 10566994)

YhjR family protein similar to Escherichia coli YhjR, encoded by a gene that is part of the yhjR-bcsQABZC operon but is not required for cellulose synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 21-62 4.48e-19

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


:

Pssm-ID: 468681  Cd Length: 42  Bit Score: 71.81  E-value: 4.48e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 157086345 21 NDFLALSQAFSLPEIDYTDISQREQLAAAIKRWPLLAEFAQQ 62
Cdd:NF040717  1 DDIAALSQAFSLPELRYVDISRQERLAAALARWPLLAELAEE 42
 
Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 21-62 4.48e-19

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


Pssm-ID: 468681  Cd Length: 42  Bit Score: 71.81  E-value: 4.48e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 157086345 21 NDFLALSQAFSLPEIDYTDISQREQLAAAIKRWPLLAEFAQQ 62
Cdd:NF040717  1 DDIAALSQAFSLPELRYVDISRQERLAAALARWPLLAELAEE 42
CBP_BcsR pfam10945
Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis ...
 19-60 2.25e-18

Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).


Pssm-ID: 431551  Cd Length: 42  Bit Score: 69.76  E-value: 2.25e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 157086345  19 FQNDFLALSQAFSLPEIDYTDISQREQLAAAIKRWPLLAEFA 60
Cdd:pfam10945  1 RQDDIAALSQAFSLPEINYIDISREERLQQALQRWPLLGEFA 42
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 23-62 9.94e-04

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 34.82  E-value: 9.94e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157086345  23 FLALSQAFSLPEIDYTD--------IS------QREQLAAAIKRWPLLAEFAQQ 62
Cdd:PRK01747  72 FLATWQAFDQFRQRHPParlkrlhfISfekfplTRADLARAHQHWPELAPLAEQ 125
 
Name Accession Description Interval E-value
BcsR_only NF040717
cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in ...
 21-62 4.48e-19

cellulose biosynthesis protein BcsR; BcsR (bacterial cellulose synthesis R, previously YhjR in Escherichia coli) is a small cytosolic protein essential for cellulose. It appears to form part of the Bcs macrocomplex that also includes membrane, periplasmic, and outer membrane components. BcsR shares homology with the N-terminal domain of BcsP, a longer protein with variable and repetitive C-terminal regions, found in beta-proteobacteria. See PF10945 for an HMM that describes the shared region.


Pssm-ID: 468681  Cd Length: 42  Bit Score: 71.81  E-value: 4.48e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 157086345 21 NDFLALSQAFSLPEIDYTDISQREQLAAAIKRWPLLAEFAQQ 62
Cdd:NF040717  1 DDIAALSQAFSLPELRYVDISRQERLAAALARWPLLAELAEE 42
CBP_BcsR pfam10945
Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis ...
 19-60 2.25e-18

Cellulose biosynthesis protein BcsR; CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).


Pssm-ID: 431551  Cd Length: 42  Bit Score: 69.76  E-value: 2.25e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 157086345  19 FQNDFLALSQAFSLPEIDYTDISQREQLAAAIKRWPLLAEFA 60
Cdd:pfam10945  1 RQDDIAALSQAFSLPEINYIDISREERLQQALQRWPLLGEFA 42
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 23-62 9.94e-04

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 34.82  E-value: 9.94e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157086345  23 FLALSQAFSLPEIDYTD--------IS------QREQLAAAIKRWPLLAEFAQQ 62
Cdd:PRK01747  72 FLATWQAFDQFRQRHPParlkrlhfISfekfplTRADLARAHQHWPELAPLAEQ 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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