ODZ4, partial [Mus musculus]
Protein Classification
RHS repeat protein( domain architecture ID 13545136)
RHS (rearrangement hotspot) repeat protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Tox-GHH | pfam15636 | GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
290-367 | 3.28e-38 | ||
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus. : Pssm-ID: 464783 Cd Length: 78 Bit Score: 131.58 E-value: 3.28e-38
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| Rhs_assc_core super family | cl37315 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
5-66 | 1.61e-08 | ||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. The actual alignment was detected with superfamily member TIGR03696: Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 50.96 E-value: 1.61e-08
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| Name | Accession | Description | Interval | E-value | ||
| Tox-GHH | pfam15636 | GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
290-367 | 3.28e-38 | ||
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus. Pssm-ID: 464783 Cd Length: 78 Bit Score: 131.58 E-value: 3.28e-38
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| Rhs_assc_core | TIGR03696 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
5-66 | 1.61e-08 | ||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 50.96 E-value: 1.61e-08
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| RhsA | COG3209 | Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
6-66 | 7.46e-06 | ||
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 48.21 E-value: 7.46e-06
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| Name | Accession | Description | Interval | E-value | ||
| Tox-GHH | pfam15636 | GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
290-367 | 3.28e-38 | ||
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus. Pssm-ID: 464783 Cd Length: 78 Bit Score: 131.58 E-value: 3.28e-38
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| Rhs_assc_core | TIGR03696 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
5-66 | 1.61e-08 | ||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 50.96 E-value: 1.61e-08
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| RhsA | COG3209 | Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
6-66 | 7.46e-06 | ||
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 48.21 E-value: 7.46e-06
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| Blast search parameters | ||||
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