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Conserved domains on  [gi|121592332|gb|ABM63266|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Helarctos malayanus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 546.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
                        330       340
                 ....*....|....*....|....*..
gi 121592332 321 KKMILLPPLIVASTMLLPLAPMLSIMD 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 546.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
                        330       340
                 ....*....|....*....|....*..
gi 121592332 321 KKMILLPPLIVASTMLLPLAPMLSIMD 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
6-299 9.97e-38

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 140.64  E-value: 9.97e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHW 84
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  85 TISMIPNPIASTV------------ITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPN 152
Cdd:COG1007  184 NLAGIAAALAAGGanspllllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 153 L-------LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNP---TLMILNLAIYIMMTLGTFMLFM- 220
Cdd:COG1007  264 LaadwqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILl 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 221 ---HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRL 296
Cdd:COG1007  344 lsrKGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

                 ...
gi 121592332 297 TYA 299
Cdd:COG1007  424 VKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-286 5.68e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 121.27  E-value: 5.68e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   23 SSHWLMIWIGFEMNMLAIIP-ILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSG-----------HWTISMIP 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   91 NPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILL-TWQKIAPL-----SVLYQISPSINPNLLVTLAATSVLV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  165 GGWGGLNQTQLRKILAYSSIAHMGWMAAIM----VYNPTLMILNLAIYIMMTLGTFMLF------MHNlSTTTLSLSHTW 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAgsviyrRVH-TRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 121592332  235 NKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITA 286
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
6-296 7.69e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 118.90  E-value: 7.69e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332    6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   85 TISMI-----------PNPIASTV-ITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSI--- 149
Cdd:TIGR01770 184 NFEDLllflsngmlniSLLLLGIVlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfg 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  150 ----NPNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPTLM---ILNLAIYIMMTLGTFMLFMh 221
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLS- 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  222 nlstTTLSLSHTWNKS-----------PLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNL 290
Cdd:TIGR01770 343 ----LLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418

                  ....*.
gi 121592332  291 YFYMRL 296
Cdd:TIGR01770 419 FYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 546.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
                        330       340
                 ....*....|....*....|....*..
gi 121592332 321 KKMILLPPLIVASTMLLPLAPMLSIMD 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-343 1.20e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 397.25  E-value: 1.20e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSiNPNLLVTLAAT 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
                        330       340
                 ....*....|....*....|...
gi 121592332 321 KKMILLPPLIVASTMLLPLAPML 343
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAI 342
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 1.51e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 363.76  E-value: 1.51e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFeST 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319
                        330       340
                 ....*....|....*....|....*.
gi 121592332 321 KKMILLPPLIVASTMLLPLAPMLSIM 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-346 5.03e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 352.30  E-value: 5.03e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
                        330       340
                 ....*....|....*....|....*..
gi 121592332 321 KKMiLLPPLIVASTMLLPLAP-MLSIM 346
Cdd:MTH00070 321 TNN-LLSLTIILSLMLLPITPtILNLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
5-306 3.75e-92

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 279.12  E-value: 3.75e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   5 IFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHW 84
Cdd:MTH00041   5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  85 TISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAATSVLV 164
Cdd:MTH00041  85 SINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 165 GGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLIASLI 244
Cdd:MTH00041 165 GGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLF 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 121592332 245 LALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFP 306
Cdd:MTH00041 245 ILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-344 1.11e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 277.62  E-value: 1.11e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFEST 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
                        330       340
                 ....*....|....*....|....
gi 121592332 321 KKmILLPPLIVASTMLLPLAPMLS 344
Cdd:MTH00200 321 SN-LLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
1-315 9.02e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 190.10  E-value: 9.02e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SGHWTISmipnpiasTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINP-NLLVTLAA 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISV 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 160 TSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTwNKSPL 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 121592332 240 IASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-346 1.29e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.34  E-value: 1.29e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 sghwtISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQIspsINPNLLVTLAAT 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFpsaNNMKMKWQFEST 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKKKN 309
                        330       340
                 ....*....|....*....|....*.
gi 121592332 321 KKMILLPPLIVASTMLLPLAPMLSIM 346
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
1-299 2.67e-52

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 175.74  E-value: 2.67e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLY 80
Cdd:MTH00011   3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 SghwtiSMIPNPIASTvITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAAT 160
Cdd:MTH00011  83 P-----SLLKNITALM-LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121592332 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYA 299
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
11-329 5.08e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 148.67  E-value: 5.08e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  11 STIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIP 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSVVL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  91 npiastvITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPsiNPNLLVTLAATSVLVGGWGGL 170
Cdd:MTH00197  85 -------VILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 171 NQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLIASLILALMLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121592332 251 LGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESTKKMILLPPL 329
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMML 314
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
6-299 9.97e-38

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 140.64  E-value: 9.97e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHW 84
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  85 TISMIPNPIASTV------------ITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPN 152
Cdd:COG1007  184 NLAGIAAALAAGGanspllllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 153 L-------LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNP---TLMILNLAIYIMMTLGTFMLFM- 220
Cdd:COG1007  264 LaadwqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILl 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 221 ---HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRL 296
Cdd:COG1007  344 lsrKGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

                 ...
gi 121592332 297 TYA 299
Cdd:COG1007  424 VKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.64e-32

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 126.09  E-value: 1.64e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  14 VLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIPNP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  93 IASTV------------ITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAP----LSVLYQISPSINP---NL 153
Cdd:PRK05777 193 LADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfavlLRLLVVAFGGLSEdwqQV 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 154 LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM------------AAIMVYnptlmilnLAIYIMMTLGTF----M 217
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaagtaegySAVLFY--------LLAYLFMTLGAFgvisL 344
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 218 LFMHNLSTTTLS----LSHTwnkSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFY 293
Cdd:PRK05777 345 LRRKGGEAESISdfagLSKR---SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421

                 ...
gi 121592332 294 MRL 296
Cdd:PRK05777 422 LRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-286 5.68e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 121.27  E-value: 5.68e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   23 SSHWLMIWIGFEMNMLAIIP-ILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSG-----------HWTISMIP 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   91 NPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILL-TWQKIAPL-----SVLYQISPSINPNLLVTLAATSVLV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  165 GGWGGLNQTQLRKILAYSSIAHMGWMAAIM----VYNPTLMILNLAIYIMMTLGTFMLF------MHNlSTTTLSLSHTW 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAgsviyrRVH-TRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 121592332  235 NKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITA 286
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
13-326 6.94e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 117.44  E-value: 6.94e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  13 IVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGI-------------IINL 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  79 LYSGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSInpNLLVTLA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV--NILLIGG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 159 ATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMI----LNLAIYIMMTLGTFM--LFMHNLSTTTLSLSH 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIqaslVYLFIYIIMSICVFSiiLALNVYKNLIIEFSG 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 233 TWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLT---YATALTMFPSAN 309
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVkilFFQANSFLLIST 319
                        330
                 ....*....|....*..
gi 121592332 310 NMKMKWQFESTKKMILL 326
Cdd:MTH00196 320 KILKKENKINLRKALLI 336
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
6-296 7.69e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 118.90  E-value: 7.69e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332    6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   85 TISMI-----------PNPIASTV-ITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSI--- 149
Cdd:TIGR01770 184 NFEDLllflsngmlniSLLLLGIVlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfg 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  150 ----NPNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPTLM---ILNLAIYIMMTLGTFMLFMh 221
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLS- 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  222 nlstTTLSLSHTWNKS-----------PLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNL 290
Cdd:TIGR01770 343 ----LLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418

                  ....*.
gi 121592332  291 YFYMRL 296
Cdd:TIGR01770 419 FYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
4-267 3.05e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 117.04  E-value: 3.05e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   4 PIFIIItstIVLGTMIVLFSSHWLMIWIGFEMNMLAI-IPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIinLLYSG 82
Cdd:MTH00199 100 PILILI---VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCA--LLYGL 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  83 HWTISMIPN------PIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSInpNLLVT 156
Cdd:MTH00199 175 TGETSIQGInsiltgDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVT--NVVLI 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 157 LAATSVLVGGWGGLNQTQLRKILAYSSIAHMG---WMAAIMVYNPTLMIL-NLAIYIMMTLGTFMLFMHNLSTTTL--SL 230
Cdd:MTH00199 253 CAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESIQASLiYMIIYVIMSICSFSIILSLKLTKGLivEV 332
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 121592332 231 SHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMII 267
Cdd:MTH00199 333 SGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
14-296 1.58e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 103.30  E-value: 1.58e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  14 VLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIinLLYSGHWTISM----- 88
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVG--LLYGATGTLNMadlaa 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  89 ----IPNPIASTV---ITIALAMKLGLSPFHFWVPE-----------VTQGIPLSSGV--ILLTWQKIAPLSVLYQISPs 148
Cdd:COG0651  195 rlaeLDPGLLLAAfalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT- 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 149 inpnLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNPTLMILNLAIYIMMTLGTFMLFM------H 221
Cdd:COG0651  274 ----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTPLGLAGALFHLLNHALAKALLFLaagaieR 349
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 121592332 222 NLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRL 296
Cdd:COG0651  350 ATGTRDLDkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
6-295 3.89e-20

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 91.27  E-value: 3.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMnmLAIIPILMK---KSNPRAMEASTKYFLTQATASMLLMLGIiiNLLY-- 80
Cdd:PRK02504 112 FAAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGS--SLLYgl 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  81 -SGHWTISMIPNPIA---STVITIAL-------AMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIA----PLSVLYQI 145
Cdd:PRK02504 188 sGGSTQLSAIALALItspSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTA 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 146 SPSINPN---LLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNP----TLMILNLAIYIMMTLGTFM- 217
Cdd:PRK02504 268 FPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAc 347
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 218 LFMHNLSTTTLSLSH---TWNKSPLIaSLILAL-MLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFY 293
Cdd:PRK02504 348 VILFSLRTGTDQISDyagLYQKDPLL-TLGLSLcLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYY 426

                 ..
gi 121592332 294 MR 295
Cdd:PRK02504 427 IR 428
ndhB CHL00049
NADH dehydrogenase subunit 2
1-263 2.91e-19

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 88.52  E-value: 2.91e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   1 MKPPIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPI--LMKKsNPRAMEASTKYFLTQATASMLLMLGIiiNL 78
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLsgYTKK-DVRSNEATMKYLLMGGASSSILVYGF--SW 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  79 LYS---GHWTISMIPNPIAST-------------VITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVL 142
Cdd:CHL00049 185 LYGlsgGEIELQEIVNGLINTqmynspgisialiFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALA 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 143 YQISPSINP-------NLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNP----TLMILNLAIYIM 210
Cdd:CHL00049 265 TRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSndgyASMITYMLFYIF 344
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 121592332 211 MTLGTF---MLFmhNLSTTTLSL---SHTWNKSPLIASLILALMLSLGGLPPLSGFIPK 263
Cdd:CHL00049 345 MNLGTFaciVLF--GLRTGTDNIrdyAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
15-267 1.04e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 84.14  E-value: 1.04e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  15 LGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAM---------EASTKYFLTQATASMLLMLGIIINLLYSGH-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  84 ------------WTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLyqISPSINP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 152 NLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMaAIMVYNPTLMILN-----LAIYIMMTLGTFMLFM------ 220
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI-LIGVSAGTYESLQaswtyAVTYLVSALASFTVICtleefg 435
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 121592332 221 ---------------HNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMII 267
Cdd:MTH00198 436 trtptsrqrdgsfgnYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
16-268 5.46e-14

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 72.66  E-value: 5.46e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   16 GTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASmLLMLGIIINLLYSGHWTIS---MIPNP 92
Cdd:TIGR01972 118 GVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGS-LLMLLAILGLYFLGGGTFDlleLLNLP 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   93 IASTV-------ITIALAMKLGLSPFHFWVPEV-----TQGIPLSSGVILltwqKIAPLSVLyQISPSINPN-------L 153
Cdd:TIGR01972 197 LPFGVqtwlflaFFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFL-RFNLPLFPDaslyfapV 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  154 LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAaimvynptlmilnLAIYIMMTLG----TFMLFMHNLSTTTLS 229
Cdd:TIGR01972 272 LAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL-------------LGIFSFNELGisgaVFQMISHGLITAALF 338
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 121592332  230 L--------SHT---------WNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:TIGR01972 339 LlvgvlyerAHTrdiakygglANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
49-300 7.54e-14

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 72.49  E-value: 7.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  49 NPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTIS----MIPNPIASTVITIALAM-------KLGLSPFHFWVPE 117
Cdd:COG1009  157 KPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSellaAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 118 VTQG-IPLSS----------GVILLtwqkiAPLSVLYQISPSINPnLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:COG1009  237 AMEGpTPVSAllhaatmvkaGVYLL-----ARLSPLFALSPVWLT-VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQ 310
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 187 MGWMaaimvynpTLMI----LNLAIYIMMTLGTFM--LFM------HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGG 253
Cdd:COG1009  311 LGYM--------FLALgvgaYVAALFHLLTHAFFKalLFLgagsviHATGTRDIRkMGGLRKKMPITAITFLIGALSLAG 382
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 121592332 254 LPPLSGFIPKWMIIQELTKNDM--IVMPTFMAITALLNLYFYMRLTYAT 300
Cdd:COG1009  383 IPPFAGFFSKEAILEAALEAGGlgPLLLAVALLGAFLTAFYSFRLFFLV 431
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
50-288 1.07e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 71.65  E-value: 1.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  50 PRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIP---NPIASTV-------ITIALAMKLGLSPFHFWVPEV- 118
Cdd:COG1008  157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaAPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDAh 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 119 ----TQGIPLSSGVIL----------------LTWQKIAPLsvlyqispsinpnlLVTLAATSVLVGGWGGLNQTQLRKI 178
Cdd:COG1008  237 veapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPL--------------LAALGVIGIIYGALVALAQTDLKRL 302
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 179 LAYSSIAHMGWM-AAIMVYNPtlMILNLAIYIMMTLG--TFMLFM------HNLSTTTLS-LSHTWNKSPLIASLILALM 248
Cdd:COG1008  303 IAYSSVSHMGFVlLGIFALNP--LGLQGAVLQMVSHGliTAALFLlvgvlyDRTHTRDIAdLGGLAKRMPVLAALFLLAA 380
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 121592332 249 LSLGGLPPLSGFIPKWMIIQELTKNDMIVmpTFMAITALL 288
Cdd:COG1008  381 LASLGLPGTSGFVGEFLVLLGAFQVNPWL--AILAALGLI 418
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
49-299 2.86e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 70.29  E-value: 2.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  49 NPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIPNPIAST--------VITIALAMKLGLSPFHFWVPEVTQ 120
Cdd:PRK08375 151 DRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENptvvtafgFVLLALALKAAVFPLHTWLPRAYP 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 121 GIPLSSGVILLTWQKIAPLSVLYQISPSINP----------NLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGwm 190
Cdd:PRK08375 231 AAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfalglgWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMG-- 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 191 aaimvynptLMILNLAIY--IMMTLGTFMLFMHNLSTTTLSLS--------HTWN---------KSPLIASLILALMLSL 251
Cdd:PRK08375 309 ---------YILLGLALLtpLALAAGLLHLLHHALMKGALFLAagaievtyGTRRlselsglgrRMPLTAAAFAVASLSL 379
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 121592332 252 GGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYA 299
Cdd:PRK08375 380 IGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-298 4.54e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.00  E-value: 4.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  47 KSNPRAMEASTKYFLTQATASMLLMLGIIInlLYSGHWTISM------------------IPNPIASTVITIALAM---- 104
Cdd:PRK12667 157 RDRGDAVEAAIKYALIGAVGTTLYFLALAF--LYATFGTLNMadlsakirglsfpltgglAGNPPLALGVALALALwaft 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 105 -KLGLSPFHFWVPEVTQGIP-----LSSGVILLT--WQKIAPLSVLYQISPSINP------NLLVTLAATSVLVGGWGGL 170
Cdd:PRK12667 235 iKAAIFPNHFWLPDAHPAAPspvsaMLSGLVVNVgaYAIIRFLYTIFGISPSLIDfraalsPILIILGAVSAIIGALMMV 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 171 NQTQLRKILAYSSIAHMGWMAaIMVYNPTLMILNLAIYIMM--TLGTFMLFM-------HNLSTTTLSLSHTWNKSPLIA 241
Cdd:PRK12667 315 VQKDVKRLLAYSTISHMGYIF-MGIGIGTQLGLAAALFHIInhAIAKSLLFLasgvfihAAGTRDIDELAGLGRKMPIAS 393
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 121592332 242 SLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTY 298
Cdd:PRK12667 394 FAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
291-341 6.21e-13

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 62.66  E-value: 6.21e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 121592332  291 YFYMRLTYATALTMFPSANNMKMKWQFESTKKMILLPPLIVASTMLLPLAP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-266 9.60e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 68.97  E-value: 9.60e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  50 PRAMEASTKYFLTQATASMLLMLGIiiNLLYSGHWTISM------------IPNPIASTVITIALAMKLGLSPFHFWVPE 117
Cdd:PRK08376 168 WEAIEAGIKYMFVGSLASSMVLLGI--ALLYGQYGTLNMaylavkmsenptVVAKIALALFIAGLAMKSGAVPVHMWLPD 245
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 118 VTQGIPLSSGVILLTwQKIAPLSVLYQIS-----PSINPN----LLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:PRK08376 246 AYPAAPSSISAMLLV-IKQAGLYALARVLfsiygPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIG 324
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 189 WM-----AAIMVYNPTLM--------------ILNLAIYIMMTLGTFMLFMHNLSTTTLS----LSHTWNKSpLIASLIL 245
Cdd:PRK08376 325 YMllglgVGLAALGDPAMasygeialaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNelggLARTMPKT-TIAFLIG 403
                        250       260
                 ....*....|....*....|.
gi 121592332 246 ALMLSlgGLPPLSGFIPKWMI 266
Cdd:PRK08376 404 AAAIV--GLPPFNGFASKWLI 422
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
33-296 2.18e-11

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 64.59  E-value: 2.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  33 FEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIiiNLLYSGHWTISMI-------------PNPIASTVIT 99
Cdd:PRK12663 137 FEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGI--GLLYGTFGTLNMAhiamrlndmgdtaTLTTIALLFL 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 100 IALAMKLGLSPFhFWVPEVTQGIPLSSGVI---LLTWQKIAPL----SVLYQISPSINPNLLVTLAATSVLVGGWGGLNQ 172
Cdd:PRK12663 215 LAFGMKAALFPF-MWLPAAYHTPNTEVAALfaaLLTKVGIYALirvfTLLFPQERELLHPLLATMAAITMVIGALGALAY 293
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 173 TQLRKILAYSSIAHMGWM-AAIMVYNPTLMilNLAIYIM---MTLGTFMLF----MHNLSTTTL--SLSHTWNKSPLIAS 242
Cdd:PRK12663 294 KDIRRIAGYQVISSIGFIlLGLALGTPAGI--NGAIFYLvhdMVVKTALFLiagsLVRLTGYRSlqYLGGLYRKEPLFGA 371
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 121592332 243 LILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRL 296
Cdd:PRK12663 372 LFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
52-263 4.61e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 64.17  E-value: 4.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  52 AMEAstkyfLTQATASMLLML-GIIINLLYSGHWTISMIP-NPIASTVITIALAM-------KLGLSPFHFWVPEVTQG- 121
Cdd:PRK12644 159 ALQA-----LLVTTAGGLAMLvGIIILGQAAGTYRLSELLaDPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAp 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 122 IPLS----------SGVILltwqkIAPLSVLYQISPSINPnLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMA 191
Cdd:PRK12644 234 TPVSaylhaaamvkAGIYL-----VARLAPGFADVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLT 307
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 192 AIMVY-NPTLMILNLAiyimMTLGTFM----LFM------HNLSTTTL-SLSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:PRK12644 308 VLVGIgTRDAALAGLA----MLLAHALfkaaLFLvvgiidHSTGTRDIrKLSGLGRRQPVLAVVAALAAASMAGLPPLLG 383

                 ....
gi 121592332 260 FIPK 263
Cdd:PRK12644 384 FVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
14-307 1.73e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.94  E-value: 1.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  14 VLGTMIVLFSSHWLMIWIGFEMNMLA---IIPILMKKSNpramEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIP 90
Cdd:PRK08668 108 LAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKKESR----KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADIS 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  91 NP-----------IASTVITIALAMKLGLSPFHFWVPEVTQGIPLS-----SGV--------ILLTWQKIAPLSVLYQIS 146
Cdd:PRK08668 184 QGlindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSfsavlSGQlsklgaygFLLVLYVLPGTKLFSEFG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 147 PSINPNL----LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPT------LMILNLAIYIMMTLGT 215
Cdd:PRK08668 264 TYRGVPLfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLgfagglFHVFNHALFKGLFFLI 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 216 FMLFMHNLSTTTLS----LSHtwnKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLY 291
Cdd:PRK08668 344 FAAVIYRTGTTKISemggLIE---KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFL 420
                        330
                 ....*....|....*.
gi 121592332 292 FYMRLTYATALTMFPS 307
Cdd:PRK08668 421 YVFRPLAGVFLGQLPS 436
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
27-330 4.72e-09

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 57.62  E-value: 4.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  27 LMIWIGFEMNMLAIIPIL-MKKSNPRAMEASTKYFLTQATASMLLMLGIIInlLYSGHWTISMIPNPIASTVIT------ 99
Cdd:MTH00226 154 FMFYILFEGVLIPMYLILgIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFS--LYNIHGTTDYLTLASCSHVVSeqtqkw 231
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 100 ------IALAMKLGLSPFHFWVPEVTQGIPLSSGV----ILLTWQKIAPLSVLYQISPSINPNL---LVTLAATSVLVGG 166
Cdd:MTH00226 232 iflgifLAMAVKIPIFPFHIWLPKAHVEAPVAGSVllagILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGS 311
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 167 WGGLNQTQLRKILAYSSIAHMGwMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTW---------NKS 237
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRlikyyrglsITM 390
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 238 PLIASLILALMLSLGGLPPLSGFIPKWM-IIQELTKNDMI--VMPTFMAITALLNLYFYMRLTYATALTMFPSANNMKMK 314
Cdd:MTH00226 391 PIWGTIMIVTSLANVAVPPSGNFIGEYLsILSSFNWNPIIgvFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRR 470
                        330
                 ....*....|....*.
gi 121592332 315 wQFESTKKMILLPPLI 330
Cdd:MTH00226 471 -EFYITASMVFFAFLI 485
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
13-267 4.63e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.44  E-value: 4.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  13 IVLGTMIVLFSSHWLMI-WIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIPN 91
Cdd:PRK05846 119 WLEGGVIGVFAALDLLLfYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNATGTFDIA 198
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  92 PIASTVIT------------IALAMKLGLSPFHFWVPEV-----TQGIPLSSGVILltwqKIAP---LSVLYQISPSINP 151
Cdd:PRK05846 199 DLLNLPLPpgvqywlflaffIAFAVKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRFSLPLFPDASH 274
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 152 N---LLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAaimvynptlmilnLAIYIMMTLG----TFMLFMHNLS 224
Cdd:PRK05846 275 EfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT-------------LGIFAGNQLGiqgaIFQMISHGLS 341
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 225 TTTLSLS--------HT---------WNKSPLIASLILALMLSLGGLPPLSGFIPKWMII 267
Cdd:PRK05846 342 SAALFLLvgvlydrlHTrdiadygglAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK12650 PRK12650
DUF4040 family protein;
44-263 1.74e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.12  E-value: 1.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  44 LMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTISMI-------PNPIASTVITIALAM----KLGLSPFH 112
Cdd:PRK12650 149 LIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGIlhsdvwaEKPGLTTVVAVLIAVaaftKSAQFPFH 228
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 113 FWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQISPSINPN-----LLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHM 187
Cdd:PRK12650 229 FWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQL 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 188 GWM-AAIMVYNPTLMILNLAIYIMMTLGTFMLFM------HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:PRK12650 309 GWIvATIGVGTPFALTAAVVHTLAHALFKSSLFMligvvdHQAGTRDIRrLGSLWRRMPFTFVSVTIAALSMAAVPPLFG 388

                 ....
gi 121592332 260 FIPK 263
Cdd:PRK12650 389 FVSK 392
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
29-302 1.06e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.03  E-value: 1.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  29 IWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTIS----MIPNPIASTVITIALAM 104
Cdd:PRK06277 125 LYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITdihnALLVNPTSPVIYGGLLL 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 105 KL-------GLSPFHFWVPEVTQGIPLSSGVILLTWQKIAPLSVLYQI-----SPSINPNLLVTLAATSVLVGGWG---G 169
Cdd:PRK06277 205 LIfgllygsGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLAMVFGvvmA 284
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 170 LNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMI-------LNLAIYI-MMTLGTFMLFMHNLSTTTLSLSHTWNKSPLIA 241
Cdd:PRK06277 285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVA 364
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 121592332 242 SLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATAL 302
Cdd:PRK06277 365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
152-342 5.99e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.81  E-value: 5.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 152 NLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLAIYIM-MTLGTFMLFM-------HNL 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnHSIVKSALFMvsgsisyHFG 359
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 224 STTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYATALT 303
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFE 439
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 121592332 304 MfPSANNMKMKWQFESTKKMILLPPLIVASTMLLPLAPM 342
Cdd:PRK12662 440 S-RMVESKANDKAFKTPNAMVLCIWIMAILSIIVGIYPI 477
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
56-296 8.91e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 47.25  E-value: 8.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  56 STKYFLTQATASMLLMLGIIInlLYSGHWTISM--IPNPIAS---------TVITIAL----AMKLGLSPFHFWVPEVTQ 120
Cdd:PRK07691 160 SIKYVLINVVSSAFFVVAVAI--LYSVVGTLNMadISVKIAElsagqtgliTVVAILFlfvfATKAGLFPLYFWLPGSYY 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 121 GIPLSSGVI---LLT----WQKIAPLSVLYQISPSINPNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AA 192
Cdd:PRK07691 238 APPIAIAALfgaLLTkvgvYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVG 317
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 193 IMVYNPTLMILnlAIYIMM--TLGTFMLFMhnLSTTTLSLSHTWN---------KSPLIASLILALMLSLGGLPPLSGFI 261
Cdd:PRK07691 318 VAMMTESGMIG--AIYYLIhdMIVKAALFL--LIGIMIKITGTTDlkkmgglikRYPVLGWMFFIAALSLAGIPPLSGFY 393
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 121592332 262 PKWMIIQELTKNDMIVMPTFMAITALLNLYFYMRL 296
Cdd:PRK07691 394 GKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
4-339 1.05e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.03  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   4 PIFIIITSTIVLGTMIVLFSSHWLMiwigfeMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLLYSGH 83
Cdd:PRK08667 118 ALFILSMLGVVASANTFSFLFFWEI------MALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGS 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  84 WTISMI--PNPIASTVIT---IALAMKLGLSPFHFWVPEVTQGIP-----LSSGVILltwqKIAPLSVLYQISPSINPNL 153
Cdd:PRK08667 192 FELSPLgaSAGILSLVFLllfLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSGVML----KVAVYGLVRFLMDVLSPEL 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 154 -----LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVY-------NPTLMILNL--AIYIMMTLGTFML 218
Cdd:PRK08667 268 wwgvlILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIiLMGIGLYvifgvygLDTLALLALggALFHSLNHALFKS 347
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 219 FMHNLSTTTLSLSHTWN---------KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQE----------LTKNDMIVMP 279
Cdd:PRK08667 348 LLFLTAGSVVHATGTRNiekmgglvkLMPYTSALFLVGAVSIAALPPFNGFASELLLYESffqsfsvadpLIKILLFSVL 427
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 280 TFMAITALLNLYFYMRLTYATALTMFPSANNMKMKwqfESTKKMILLPPLIVASTMLLPL 339
Cdd:PRK08667 428 AIFALTSALAAACFVKAFGITFLAMPRSQEARSAK---EVSKPMLIGPAVLAVACLVLGL 484
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
29-268 1.20e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.89  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  29 IWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIiiNLLYSGHWTISM---------IPNPIAST--- 96
Cdd:PRK12665 136 LYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGI--ALVYAATGTLNMadlavrldeLPSGTRTAlfa 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  97 VITIALAMKLGLSPFHFWVPE-----------VTQGIPLSSGVILLtwqkIAPLSVLYQiSPSINpNLLVTLAATSVLVG 165
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVYAI----IRTHTLLFP-GGGLD-TLLMVVALLTMVVG 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 166 GWGGLNQTQLRKILAYSSIAHMGWMaaimvynptLMILNLAIYIMMTLGTFMLFMHNLSTTTLSL----------SHTWN 235
Cdd:PRK12665 288 ILGAIAQSDIKRLLSFTLVSHIGYM---------VFGIALSTVAGLSGAIYYVAHHITVQTTLFLvvglierqagSSSLR 358
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 121592332 236 K-------SPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12665 359 RlgglakaSPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
52-332 1.30e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 46.68  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  52 AMEASTKYFLTQATASMLLMLGIiiNLLYSGHWTISMIP--------NP----IASTVITIALAMKLGLSPFHFWVPEVT 119
Cdd:PRK08377 156 AAEASMKYIVLGGIGSSFFLIGV--ALIYGATGTLNMAHiaqlagtiDPtvaqVGLALLIFGLAVEAELFPLNAWAPDAY 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 120 QGIP------LSSGVILLTWQKIAPLSVLYQISPSINP--NLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMA 191
Cdd:PRK08377 234 QAAPhpitvmFSAFVVKAGLYAMARILYLMQNANGWSSvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIA 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 192 AIMVYNPTL--------MILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPK 263
Cdd:PRK08377 314 LALALGTQAgvdagvfhMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSK 393
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 121592332 264 WMIIQELTKNDMIVMPTFMAITALLNLYFYMRLTYatalTMFPSANNMKMKWQFESTKKMILLPPLIVA 332
Cdd:PRK08377 394 FRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIH----TMWFKGEGERIRENAAIGIILLLLAALIVV 458
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
100-261 7.64e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 44.27  E-value: 7.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 100 IALAMKLGLSPFHFWVPEVTQGIPLSSGVIL--------------LTWqkiaPLsvLYQISPSINPnLLVTLAATSVLVG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILagvllklggygfirFSW----PL--LPEASEYFSP-LIQTLSLLAIIYG 286
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 166 GWGGLNQTQLRKILAYSSIAHMGwMAAIMVYNPTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHT---------WNK 236
Cdd:MTH00217 287 SLTTCRQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTrlikyyrgmVIT 365
                        170       180
                 ....*....|....*....|....*
gi 121592332 237 SPLIASLILALMLSLGGLPPLSGFI 261
Cdd:MTH00217 366 MPLFGILMLLLVLANASIPLSCNFV 390
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
55-288 8.41e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.25  E-value: 8.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  55 ASTKYFLTQATASMLLMLGIIINLLYSGHWTISMIPNPIASTVIT----------IALAMKLGLSPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLAlelllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 121 GIPLSSGVILLTWQKIAPLSVLYQISPSINPNL---LVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMaAIMVYN 197
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFapaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV-LLGIAA 296
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 198 PTLMILNLAIYIMMTLGTFMLFMHNLSTTTLSLSHTWN---------KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12561 297 FTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSipnmgglakVMPKTFALFTASSMASLALPGMSGFVSELTVFL 376
                        250       260
                 ....*....|....*....|
gi 121592332 269 ELTKNDmIVMPTFMAITALL 288
Cdd:PRK12561 377 GITSSD-VYSSTFRTITILL 395
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
4-190 1.15e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.59  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   4 PIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNML---AIIPILMKKSNpraMEASTKYFLTQATASMLLMLGIII---- 76
Cdd:PRK08676 102 KVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAMIFAFIGLIFlfsl 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  77 --NLLYSG--HWTISMIPNP--------IASTVITIALAMKLGLSPFHFWVPEVTQGIP------LSSGVILLTWQKIAP 138
Cdd:PRK08676 179 trQALGTGtlNWTELAAHASllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsalLSGTVLNIGIYGILR 258
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 121592332 139 LSVLYQISP--SINPNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK08676 259 LSALLRQSGaaEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
6-268 1.25e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 43.60  E-value: 1.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   6 FIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIINLlYSGHWT 85
Cdd:MTH00207  90 FISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTL-NQGHWS 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  86 I-SMIPNPIASTV---ITIALAMKLGLSPFHFWVPE-----------VTQGIPLSSGVILLTwqKIAP-LSVLYQISPsi 149
Cdd:MTH00207 169 ItNMWQTDMNNYIalsIMIAAMTKSAQMPFSSWLPAamaaptpvsalVHSSTLVTAGVFLLI--RFYPfLSSTYWFNP-- 244
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 150 npnLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMG-WMAAIMVYNPTLMILNLAIYIMMTLGTF-----MLFMHNL 223
Cdd:MTH00207 245 ---ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFvcagsLIHSHHH 321
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 121592332 224 STTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:MTH00207 322 SQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
14-270 1.31e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.63  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  14 VLGTMIVLFSSHWLMIWIGFE-MNMLAIIPILMKKSNPRAmeasTKYFLTQATASMLLML-GIIINLLYSGHWTISMIPN 91
Cdd:PRK06459  82 ILGMAIVLTSDNYLLFLAGWEiMTIPSYVAIALTKKNKRP----AFVFMAFGELSTVLILaGFAWAFIISGTTNFSYLPS 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  92 PIASTVITIALAMKLGLSPFHF--WVPEVTQGIP------LSSGVILLTWQKIAPLSVLYQISPSINPNL-LVTLAATSV 162
Cdd:PRK06459 158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPsnfsaiLSATMTLMGVYGILKMTILTQTIPIGYFGLtILAIGAFSI 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMAA-----IMVYNptlMILNLAIYIMMTLGTFMlFMHNLSTTTLSLS------ 231
Cdd:PRK06459 238 LFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQ---LITSIEHFSLITVILYS-FAHSVAKTGLFLSsglqek 313
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 121592332 232 --HTWNKSPLIASLILALML---SLGGLPPLSGFIPKWMIIQEL 270
Cdd:PRK06459 314 qsITYSKKIRNRWIELGLTLlasSLSGLLPNIGGVASWLLLESL 357
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
13-278 1.35e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.40  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  13 IVLGTMIVLF-SSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYfLTQATASMLLMLGIIInLLYSGHWTISMI-- 89
Cdd:PRK07234 102 ILHGSVNAAFvCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRY-LFYSNVAMLFYLIGAV-LVYQANGTFAFSgl 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  90 --PNPIASTVITIALAMKLGLSPFHFWVPE--VTQGIPLS---SGVILLTwqKIAPLSVLYQISPSINPnLLVTLAATSV 162
Cdd:PRK07234 180 atADPEAFALIALGLLVKGGIFVSGLWLPLthSEAEPPVSallSGVVVKA--GVFPLVRCALDVPGLDL-IVRIFGVGTA 256
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 163 LVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVynptlmilnlaiyimmtlGTFMLFMHNLSTTTL--------SLSHT 233
Cdd:PRK07234 257 LLGVLFALLEKDLKRMLAFSTISQLGFiLAAPLV------------------GGLYALAHGLVKSTLflcagalpSRNFT 318
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 121592332 234 WNKSPLIA-----SLILAlMLSLGGLPPLSGFIPKWMIIQELTKNDMIVM 278
Cdd:PRK07234 319 ELISQMLGigkwiPLTMA-SFSIAGFPLLAGFVSKVLTLKNLLPWQAIAL 367
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-190 1.58e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  98 ITIALAMKLGLSPFHFWVPE--VTQGIPLS---SGVILL----------------TWQKIAPlsvlyqispsinpnLLVT 156
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDahVEASTPVSvllAGVLLKlgtygllrfgvglfpeAWVYLAP--------------WLAT 276
                         90       100       110
                 ....*....|....*....|....*....|....
gi 121592332 157 LAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06473 277 WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-263 3.11e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 3.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 110 PFHFWVPEVTQG-IPLSSGVILLTWQKiAPLSVLYQISPSINPN-----LLVTLAATSVLVGGWGGLNQTQLRKILAYSS 183
Cdd:PRK12647 213 PFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 184 IAHMGWMAAIMVYNPTLMILNLAIYIMM-TLGTFMLFM------HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLP 255
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFLVAhSLYKGALFMvagiidHETGTRDITkLGGLRRAMPITAAAALLAALSMAGLP 371

                 ....*...
gi 121592332 256 PLSGFIPK 263
Cdd:PRK12647 372 PLFGFLAK 379
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
107-272 4.77e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.12  E-value: 4.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 107 GLSPFHFWVPEVTQGIP------LSSGVILLTWQKIAPLSVLYQISPSINPNLLVTLAATSVLVGGWGGLNQTQLRKILA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASapaaalFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLA 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 181 YSSIAHMG--------WMAAIMVYNPTLMILNLaiyimmTLGTFMLFMHNLSTTTLSLS--HTW---------------N 235
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGL------VGGLYHLLNHSLFKSVLFLGagSVWfrtghrdieklggigK 348
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 121592332 236 KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTK 272
Cdd:PRK08042 349 KMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
4-284 6.90e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.34  E-value: 6.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332   4 PIFIIITSTIVLGTMIVLFSSHWLMIWIGFEMNMLAIIPILMKKSNPRAMEASTKYFLTQATASMLLMLGIIInLLYSGH 83
Cdd:PRK06589 116 SRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVI-LIYTKT 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  84 WTISMIPNPIASTVITIALAM-------KLGLSPFHFWVPE-----------------VTQGIPLSSGVILLTWqKIAPL 139
Cdd:PRK06589 195 GNLDFVSGGLFSKNQSIILLLmfiygiaKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYL 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 140 SVLYQISpsinpNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW--MAAIMVYNPTLMILNLAIyIMMTLGTFM 217
Cdd:PRK06589 274 QRIFAEF-----NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHL-VSHSFAKIC 347
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 121592332 218 LFMHNLSTTTLS-------LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPTFMAI 284
Cdd:PRK06589 348 LFYSMGSIYSLKkedqvdkLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
100-298 1.01e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 40.82  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 100 IALAMKLGLSPFHFWVPEVTQGIPLSSGV----ILLTWQKIAPLSVLYQISPS----INPnLLVTLAATSVLVGGWGGLN 171
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAHVEAPVAGSVilagILLKLGGYGFLRFSWPLFPAaseyFAP-LIVMLSVIAVIYGSLTTCR 295
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 172 QTQLRKILAYSSIAHMGwMAAIMVYNPTLMILNLAIYIMMTLG----------TFMLFMHNLSTTTLSLSHTWNKsPLIA 241
Cdd:MTH00204 296 QVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLMLAHGfvssalfiavTFLYERHHTRLIKYYRGLTLTM-PLFV 373
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 242 SLILALMLSLGGLPPLSGFIPKWMIIQELTKND--MIVMPTF-MAITALLNLYFYMRLTY 298
Cdd:MTH00204 374 IIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSlgLGVLVTSgMVWSAAYSLYLYNRISF 433
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-268 8.38e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 37.95  E-value: 8.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332  50 PRAMEASTKYFLTQATASMLLMLGIIINLLYSGHWTIS--MIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGIPLSSG 127
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGaiAGLGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 128 VILLTWQKIAPLSVLYQISPSInpNLLVTLAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVynPTLMILNla 206
Cdd:PRK12668 219 VFLSAFTTKTAVYALARAFPGT--ELLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMvAGIGI--GTALAIN-- 292
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121592332 207 iyimmtlGTF-----------MLFM------HNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12668 293 -------GAVahafnhilykgLLFMsagavlYRTGTEKLTeLGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIIS 365
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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