NCBI Conserved Domain Search

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

190-298

1.02e-45

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1 that are critical in maintaining the chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the first PWWP domain. This family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438972 Cd Length: 114 Bit Score: 160.17 E-value: 1.02e-45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  190 VGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKV-NSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRSNQLP 268
Cdd:cd20144    1 VGDLVWAKVSGHPWWPCMVTYDPESGLYTKIKGsGGRTYRQYHVQFFGDNGERGWVSEKSLMPFEGKEKFEELVKELKKK 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 86278478  269 INISGRKRA----VPRKFRQKWEIGVSQAKEALG 298
Cdd:cd20144   81 AKKKSKKAKlekkVKPSRRKKWEIAVEEAEEALP 114

PHD_SF super family

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) ...

760-813

2.82e-26

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) finger typically characterized as Cys4HisCys3, and a non-canonical extended PHD finger, characterized as Cys2HisCys5HisCys2His. Variations include the RAG2 PHD finger characterized by Cys3His2Cys2His and the PHD finger 5 found in nuclear receptor-binding SET domain-containing proteins characterized by Cys4HisCys2His. The PHD finger is also termed LAP (leukemia-associated protein) motif or TTC (trithorax consensus) domain. Single or multiple copies of PHD fingers have been found in a variety of eukaryotic proteins involved in the control of gene transcription and chromatin dynamics. PHD fingers can recognize the unmodified and modified histone H3 tail, and some have been found to interact with non-histone proteins. They also function as epigenome readers controlling gene expression through molecular recruitment of multi-protein complexes of chromatin regulators and transcription factors. The PHD finger domain SF is structurally similar to the RING and FYVE_like superfamilies.

The actual alignment was detected with superfamily member cd15654:

Pssm-ID: 473978 Cd Length: 54 Bit Score: 102.62 E-value: 2.82e-26

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478  760 TCLSCHYSGRAACKATKGKMMRCLRCPVAYHVGDLCVAAGSEMISSSAIVCTNH 813
Cdd:cd15654    1 SCVSCHASNPSNPRATKGKMMRCVRCPVAYHGGDLCIAAGCAVLTSNSIICTNH 54

PHD_SF super family

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) ...

1234-1276

2.31e-24

The actual alignment was detected with superfamily member cd15660:

Pssm-ID: 473978 Cd Length: 43 Bit Score: 96.54 E-value: 2.31e-24

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1234 ECFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15660    1 ECFRCGDGGQLVLCDRKSCTKAYHLSCLGLTKRPFGKWECPWH 43

PHD4_NSD2

cd15657

PHD finger 4 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

830-870

3.59e-22

PHD finger 4 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the fourth PHD finger.

Pssm-ID: 277127 Cd Length: 41 Bit Score: 90.45 E-value: 3.59e-22

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMPDGSWFCNDCR 870
Cdd:cd15657    1 WCFVCSKGGSLLCCESCPAAFHPDCLNIEMPDGSWFCNDCR 41

PHD_SF super family

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) ...

713-759

2.89e-21

The actual alignment was detected with superfamily member cd15651:

Pssm-ID: 473978 Cd Length: 47 Bit Score: 87.98 E-value: 2.89e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 86278478  713 VCFTCKKSEGEVRRCCALHCGRFYHEACVRLSALTVFENRGFRCPLH 759
Cdd:cd15651    1 SCFVCKESKGDVKRCVVLHCGKFYHEACVRKYPLTVFENRGFRCPLH 47

C5HCH

pfam17982

NSD Cys-His rich domain; This is an NSD-specific Cys-His rich region (C5HCH) domain. Family ...

1275-1320

5.40e-16

NSD Cys-His rich domain; This is an NSD-specific Cys-His rich region (C5HCH) domain. Family members include NSD3 (nuclear receptor SET domain-containing) proteins. This domain is located on the C-terminal of NSD1, 2 and 3 proteins. C5HCH domain lies adjacent to the fifth plant homeodomain (PHD5). The PHD5-C5HCH module of NSD3 (PHD5-C5HCHNSD3) recognizes the H3 N-terminal peptide containing unmodified K4 and trimethylated K9. Moreover, it has been reported that the PHD5-C5HCH module of NSD1 (PHD5-C5HCH) was the sole region required for tight binding of the NUP98-NSD1 fusion protein to the HoxA9 gene promoter, implicating that PHD5-C5HCH might have chromatin targeting ability.

Pssm-ID: 465605 Cd Length: 50 Bit Score: 73.27 E-value: 5.40e-16

                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 86278478   1275 WHHCDVCGKNSDAFCQLCPNSFCKAHQEGALRSHPLTGQLCCQEHE 1320
Cdd:pfam17982    1 WHQCSVCGSPATSFCEFCPSSFCKDHEKGALVPSALEGRLCCSEHD 46

PHD_SF super family

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) ...

666-708

1.20e-15

The actual alignment was detected with superfamily member cd15649:

Pssm-ID: 473978 Cd Length: 44 Bit Score: 72.11 E-value: 1.20e-15

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  666 VCLVCEQTGEDIVTCAGQCYGTYHLHCIGV-ERSAEKILCTACS 708
Cdd:cd15649    1 VCQVCESFGESLVTCEGECCGLFHLECLGLtSLPDEKFICQECK 44

AWS super family

cl39039

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc ...

1021-1056

3.70e-10

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.

The actual alignment was detected with superfamily member pfam17907:

Pssm-ID: 465559 Cd Length: 39 Bit Score: 56.28 E-value: 3.70e-10

                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 86278478   1021 PCSFESECLNRMLLYECHPQVCPAGERCQNQDFTKR 1056
Cdd:pfam17907    4 PCGCGSDCINRMLFVECTPKTCPCGESCQNQRFQRK 39

SF-CC1 super family

cl36939

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...

537-672

3.68e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.

The actual alignment was detected with superfamily member TIGR01622:

Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 41.44 E-value: 3.68e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    537 KRSRESKQDVTLQPKKKSKLEKDfkkwkcpkaassaaaaVPAPRGRRRKTDRDENRKQSKKASKEEPPPKAKRGRKRKEE 616
Cdd:TIGR01622    2 YRDRERERLRDSSSAGDRDRRRD----------------KGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRR 65

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 86278478    617 SGRHSFPASKKCRPSSYAEPERPD-SPSDSTDESHPSKKTERTPgAKKESVCLVCEQ 672
Cdd:TIGR01622   66 PNRRYRPREKRRRRGDSYRRRRDDrRSRREKPRARDGTPEPLTE-DERDRRTVFVQQ 121

Name

Accession

Description

Interval

E-value

SET_NSD2

cd19211

SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) ...

1058-1199

1.43e-105

Pssm-ID: 380988 [Multi-domain] Cd Length: 142 Bit Score: 330.41 E-value: 1.43e-105

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19211    1 YPETKIIKTEGKGWGLIAKRDIKKGEFVNEYVGELIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19211   81 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 142

PWWP_NSD2_rpt2

cd20165

second PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar ...

876-970

5.44e-65

second PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2, also called histone-lysine N-methyltransferase NSD2, multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, an high mobility group (HMG) box, five PHD (plant-homeodomain) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD domains mediate chromatin interaction and recognition of histone marks. This model corresponds to the second PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438993 Cd Length: 96 Bit Score: 214.44 E-value: 5.44e-65

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  876 KYRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQQ-TGIGKVF 954
Cdd:cd20165    1 RFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQKMKHEIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSKYQGgKGIGKVF 80

                         90
                 ....*....|....*.
gi 86278478  955 KNALLDAETRFKEIEM 970
Cdd:cd20165   81 KNALQEAEARFREIKL 96

PWWP_NSD_rpt1

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

190-298

1.02e-45

Pssm-ID: 438972 Cd Length: 114 Bit Score: 160.17 E-value: 1.02e-45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  190 VGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKV-NSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRSNQLP 268
Cdd:cd20144    1 VGDLVWAKVSGHPWWPCMVTYDPESGLYTKIKGsGGRTYRQYHVQFFGDNGERGWVSEKSLMPFEGKEKFEELVKELKKK 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 86278478  269 INISGRKRA----VPRKFRQKWEIGVSQAKEALG 298
Cdd:cd20144   81 AKKKSKKAKlekkVKPSRRKKWEIAVEEAEEALP 114

SET

smart00317

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...

1059-1182

2.63e-44

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues

Pssm-ID: 214614 [Multi-domain] Cd Length: 124 Bit Score: 156.34 E-value: 2.63e-44

                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    1059 PETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNH 1138
Cdd:smart00317    1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDIDSDLCIDARRKGNLARFINH 80

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
gi 86278478    1139 SCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGN 1182
Cdd:smart00317   81 SCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSDYANE 124

SET

COG2940

SET domain-containing protein (function unknown) [General function prediction only];

1056-1196

1.20e-34

SET domain-containing protein (function unknown) [General function prediction only];

Pssm-ID: 442183 [Multi-domain] Cd Length: 134 Bit Score: 129.31 E-value: 1.20e-34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1056 RLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHaqeNDITHFYMLTIDKDRIIDAGPKGNYSRF 1135
Cdd:COG2940    3 MLHPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERREPH---KEPLHTYLFELDDDGVIDGALGGNPARF 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 86278478 1136 MNHSCQPNCEtqkwTVNGDTRVGLFAVCDIPAGTELTFNYNLDClGNEKTVCRCgaPNCSG 1196
Cdd:COG2940   80 INHSCDPNCE----ADEEDGRIFIVALRDIAAGEELTYDYGLDY-DEEEYPCRC--PNCRG 133

SET

pfam00856

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...

1070-1176

5.65e-32

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.

Pssm-ID: 459965 [Multi-domain] Cd Length: 115 Bit Score: 121.09 E-value: 5.65e-32

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478   1070 GWGLISLRDIKKGEFVNEYVGE-LIDEEECRSRIRHAQENDIT---HFYMLTIDKD--RIID--AGPKGNYSRFMNHSCQ 1141
Cdd:pfam00856    1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELrlwGPYLFTLDEDseYCIDarALYYGNWARFINHSCD 80

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 86278478   1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:pfam00856   81 PNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDYG 115

PHD3_NSD2

cd15654

PHD finger 3 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

760-813

2.82e-26

PHD finger 3 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant homeodomain) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the third PHD finger.

Pssm-ID: 277124 Cd Length: 54 Bit Score: 102.62 E-value: 2.82e-26

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478  760 TCLSCHYSGRAACKATKGKMMRCLRCPVAYHVGDLCVAAGSEMISSSAIVCTNH 813
Cdd:cd15654    1 SCVSCHASNPSNPRATKGKMMRCVRCPVAYHGGDLCIAAGCAVLTSNSIICTNH 54

PHD5_NSD2

cd15660

PHD finger 5 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

1234-1276

2.31e-24

PHD finger 5 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the fifth PHD finger.

Pssm-ID: 277130 Cd Length: 43 Bit Score: 96.54 E-value: 2.31e-24

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1234 ECFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15660    1 ECFRCGDGGQLVLCDRKSCTKAYHLSCLGLTKRPFGKWECPWH 43

PWWP

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...

879-966

2.30e-22

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic cavity created by this domain within the full-length protein, Pdp1, abolishes the interaction o f the protein with H4K20me3. In fission yeast, Set9 is the sole enzyme that catalyzes all three states of H4K20me, and Set9-mediated H4K20me is required for efficient recruitment of checkpoint protein Crb2 to sites of DNA damage. The methylation of H4K20 is involved in a diverse array of cellular processes, such as organizing higher-order chromatin, maintaining genome stability, and regulating cell-cycle progression.

Pssm-ID: 459964 [Multi-domain] Cd Length: 92 Bit Score: 92.49 E-value: 2.30e-22

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    879 DVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGD---RGSKYQQTGIGKVFK 955
Cdd:pfam00855    2 DLVWAKLKGYPWWPARVVDPEELPENVLKPKKKDGEYLVRFFGDSEFAWVKPKDLKPFDEGDefeYLKKKKKKKKKKAFK 81

                           90
                   ....*....|.
gi 86278478    956 NALLDAETRFK 966
Cdd:pfam00855   82 KALEEAEEALK 92

PHD4_NSD2

cd15657

PHD finger 4 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

830-870

3.59e-22

Pssm-ID: 277127 Cd Length: 41 Bit Score: 90.45 E-value: 3.59e-22

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMPDGSWFCNDCR 870
Cdd:cd15657    1 WCFVCSKGGSLLCCESCPAAFHPDCLNIEMPDGSWFCNDCR 41

PHD2_NSD2

cd15651

PHD finger 2 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

713-759

2.89e-21

PHD finger 2 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant homeodomain) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the second PHD finger.

Pssm-ID: 277121 Cd Length: 47 Bit Score: 87.98 E-value: 2.89e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 86278478  713 VCFTCKKSEGEVRRCCALHCGRFYHEACVRLSALTVFENRGFRCPLH 759
Cdd:cd15651    1 SCFVCKESKGDVKRCVVLHCGKFYHEACVRKYPLTVFENRGFRCPLH 47

PWWP

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

875-937

6.38e-19

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

Pssm-ID: 214603 [Multi-domain] Cd Length: 63 Bit Score: 82.01 E-value: 6.38e-19

                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86278478     875 PKYRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYM 937
Cdd:smart00293    1 FKPGDLVWAKMKGFPWWPALVISPKMTPDNIMKRKSDENLYPVLFFGDKDTAWIPSSKLFPLT 63

C5HCH

pfam17982

NSD Cys-His rich domain; This is an NSD-specific Cys-His rich region (C5HCH) domain. Family ...

1275-1320

5.40e-16

Pssm-ID: 465605 Cd Length: 50 Bit Score: 73.27 E-value: 5.40e-16

                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 86278478   1275 WHHCDVCGKNSDAFCQLCPNSFCKAHQEGALRSHPLTGQLCCQEHE 1320
Cdd:pfam17982    1 WHQCSVCGSPATSFCEFCPSSFCKDHEKGALVPSALEGRLCCSEHD 46

PHD1_NSD3

cd15649

PHD finger 1 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

666-708

1.20e-15

PHD finger 1 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed histone-lysine N-methyltransferase NSD3, or protein whistle, or WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant-homeodomain (PHD) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the first PHD finger.

Pssm-ID: 277119 Cd Length: 44 Bit Score: 72.11 E-value: 1.20e-15

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  666 VCLVCEQTGEDIVTCAGQCYGTYHLHCIGV-ERSAEKILCTACS 708
Cdd:cd15649    1 VCQVCESFGESLVTCEGECCGLFHLECLGLtSLPDEKFICQECK 44

PWWP

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...

191-297

3.13e-15

Pssm-ID: 459964 [Multi-domain] Cd Length: 92 Bit Score: 72.46 E-value: 3.13e-15

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    191 GDVIWTKVSGYPWWPCMITTDPEFNMHFRSKvnSRTGLLYHVQYFGDTpERGYVFEKCIVTFSGKHQYQSLSRSNQlpin 270
Cdd:pfam00855    1 GDLVWAKLKGYPWWPARVVDPEELPENVLKP--KKKDGEYLVRFFGDS-EFAWVKPKDLKPFDEGDEFEYLKKKKK---- 73

                           90       100
                   ....*....|....*....|....*..
gi 86278478    271 isgrkravpRKFRQKWEIGVSQAKEAL 297
Cdd:pfam00855   74 ---------KKKKKAFKKALEEAEEAL 91

AWS

pfam17907

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc ...

1021-1056

3.70e-10

Pssm-ID: 465559 Cd Length: 39 Bit Score: 56.28 E-value: 3.70e-10

                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 86278478   1021 PCSFESECLNRMLLYECHPQVCPAGERCQNQDFTKR 1056
Cdd:pfam17907    4 PCGCGSDCINRMLFVECTPKTCPCGESCQNQRFQRK 39

PWWP

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

188-237

7.43e-10

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

Pssm-ID: 214603 [Multi-domain] Cd Length: 63 Bit Score: 56.20 E-value: 7.43e-10

                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 86278478     188 FSVGDVIWTKVSGYPWWPCMITT---DPEFNMHFRSKVNsrtglLYHVQYFGD 237
Cdd:smart00293    1 FKPGDLVWAKMKGFPWWPALVISpkmTPDNIMKRKSDEN-----LYPVLFFGD 48

AWS

smart00570

associated with SET domains; subdomain of PRESET

1008-1058

7.75e-09

associated with SET domains; subdomain of PRESET

Pssm-ID: 197795 Cd Length: 50 Bit Score: 52.79 E-value: 7.75e-09

                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 86278478    1008 EIPKCNCKPSTERPCSFESECLNRMLLYEChPQVCPAGERCQNQDFTKRLY 1058
Cdd:smart00570    1 DIMTCECKPTDDDETACGSDCLNRMLFIEC-SSSCPCGSYCSNQRFQKRQY 50

PHD

PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar ...

830-871

8.80e-08

PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3.

Pssm-ID: 425785 [Multi-domain] Cd Length: 51 Bit Score: 49.80 E-value: 8.80e-08

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 86278478    830 WCFICSK---GGRLLCCESCPAAFHPDCLNIAM-----PDGSWFCNDCRS 871
Cdd:pfam00628    1 YCAVCGKsddGGELVQCDGCDDWFHLACLGPPLdpaeiPSGEWLCPECKP 50

PHD

PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in ...

830-869

2.55e-07

PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers.

Pssm-ID: 214584 [Multi-domain] Cd Length: 47 Bit Score: 48.36 E-value: 2.55e-07

                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 86278478     830 WCFICSK---GGRLLCCESCPAAFHPDCLNIAM----PDGSWFCNDC 869
Cdd:smart00249    1 YCSVCGKpddGGELLQCDGCDRWYHQTCLGPPLleeePDGKWYCPKC 47

SF-CC1

TIGR01622

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...

537-672

3.68e-03

Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 41.44 E-value: 3.68e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    537 KRSRESKQDVTLQPKKKSKLEKDfkkwkcpkaassaaaaVPAPRGRRRKTDRDENRKQSKKASKEEPPPKAKRGRKRKEE 616
Cdd:TIGR01622    2 YRDRERERLRDSSSAGDRDRRRD----------------KGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRR 65

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 86278478    617 SGRHSFPASKKCRPSSYAEPERPD-SPSDSTDESHPSKKTERTPgAKKESVCLVCEQ 672
Cdd:TIGR01622   66 PNRRYRPREKRRRRGDSYRRRRDDrRSRREKPRARDGTPEPLTE-DERDRRTVFVQQ 121

PHD

PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in ...

1235-1276

4.16e-03

Pssm-ID: 214584 [Multi-domain] Cd Length: 47 Bit Score: 36.42 E-value: 4.16e-03

                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 86278478    1235 CFRCGDGGQLVLCDkkGCTKAYHLSCLDRTKR---PFGRWDCPWH 1276
Cdd:smart00249    5 CGKPDDGGELLQCD--GCDRWYHQTCLGPPLLeeePDGKWYCPKC 47

PHD

PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar ...

1235-1281

4.27e-03

Pssm-ID: 425785 [Multi-domain] Cd Length: 51 Bit Score: 36.70 E-value: 4.27e-03

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 86278478   1235 CFRCGDGGQLVLCDkkGCTKAYHLSC----LDRTKRPFGRWDCPwhHCDVC 1281
Cdd:pfam00628    5 CGKSDDGGELVQCD--GCDDWFHLAClgppLDPAEIPSGEWLCP--ECKPK 51

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

549-663

4.94e-03

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 41.21 E-value: 4.94e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478   549 QPKKKSKLEKDFKKwkcPKAASSAAAAVPAPRGRRRK-------TDRDENRKQSKKASKEEPPPKAKRGRKRKEESGRHS 621
Cdd:PTZ00449  535 EDSKESDEPKEGGK---PGETKEGEVGKKPGPAKEHKpskiptlSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKS 611

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 86278478   622 --------FPASKKcRPSSYAEPERPDSP----SDSTDESHPSKKTERTPGAKK 663
Cdd:PTZ00449  612 pklpelldIPKSPK-RPESPKSPKRPPPPqrpsSPERPEGPKIIKSPKPPKSPK 664

Name

Accession

Description

Interval

E-value

SET_NSD2

cd19211

SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) ...

1058-1199

1.43e-105

Pssm-ID: 380988 [Multi-domain] Cd Length: 142 Bit Score: 330.41 E-value: 1.43e-105

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19211    1 YPETKIIKTEGKGWGLIAKRDIKKGEFVNEYVGELIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19211   81 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 142

SET_NSD

cd19173

SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, ...

1058-1199

2.49e-101

SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, NSD2, NSD3 and similar proteins; The nuclear receptor-binding SET Domain (NSD) family of histone H3 lysine 36 methyltransferases is comprised of NSD1, NSD2, and NSD3, which are primarily known to be involved in chromatin integrity and gene expression through mono-, di-, or tri-methylating lysine 36 of histone H3 (H3K36), respectively. NSD1 (EC 2.1.1.43; also termed histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B) or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-27' (H3K27me) methyltransferase activity. NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3.

Pssm-ID: 380950 [Multi-domain] Cd Length: 142 Bit Score: 318.49 E-value: 2.49e-101

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19173    1 YPPTEPFKTGDRGWGLRTKRDIKKGDFVIEYVGELIDEEECRRRLKKAHENNITNFYMLTLDKDRIIDAGPKGNLSRFMN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19173   81 HSCQPNCETQKWTVNGDTRVGLFAVRDIPAGEELTFNYNLDCLGNEKKVCRCGAPNCSGFLG 142

SET_NSD1

cd19210

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...

1058-1199

5.23e-94

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1 (EC 2.1.1.43; also termed Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD1 is altered in approximately 10% of head and neck cancer patients with 55% decrease in risk of death in NSD1-mutated versus non-mutated patients; its disruption promotes favorable chemotherapeutic responses linked to hypomethylation.

Pssm-ID: 380987 [Multi-domain] Cd Length: 142 Bit Score: 298.38 E-value: 5.23e-94

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19210    1 YPEVEIFRTLGRGWGLRCKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19210   81 HCCQPNCETQKWTVNGDTRVGLFALCDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFLG 142

SET_NSD3

cd19212

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...

1058-1199

4.99e-89

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 3 (NSD3) and similar proteins; NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. NSD3 is amplified and overexpressed in multiple cancer types, including acute myeloid leukemia (AML), breast, lung, pancreatic and bladder cancers, as well as squamous cell carcinoma of the head and neck (SCCHN). NSD3 contributes to tumorigenesis by interacting with bromodomain-containing protein 4 (BRD4), the bromodomain and extraterminal (BET) protein, which is a potential therapeutic target in acute myeloid leukemia (AML). NSD3 is amplified in primary tumors and cell lines from breast carcinoma, and can promote the cell viability of small-cell lung cancer and pancreatic ductal adenocarcinoma. High NSD3 expression is implicated in poor grade and heavy smoking history in SCCHN. Thus, NSD3 may serve as a potential druggable target for selective cancer therapy.

Pssm-ID: 380989 [Multi-domain] Cd Length: 142 Bit Score: 284.51 E-value: 4.99e-89

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19212    1 YPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLTVTKDRIIDAGPKGNYSRFMN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19212   81 HSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGADNCSGFLG 142

SET_SETD2

cd19172

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...

1058-1199

3.62e-66

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.

Pssm-ID: 380949 [Multi-domain] Cd Length: 142 Bit Score: 219.76 E-value: 3.62e-66

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1058 YPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 1137
Cdd:cd19172    1 YAKVEVFRTEKKGWGLRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYAREGNRHYYFMALKSDEIIDATKKGNLSRFIN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 86278478 1138 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1199
Cdd:cd19172   81 HSCEPNCETQKWTVNGELRVGFFAKRDIPAGEELTFDYQFERYGKEAQKCYCGSPNCRGYIG 142

SET_SETD2-like

cd10531

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), ...

1062-1195

1.96e-65

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins; This family includes SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2) and ASH1-like protein (ASH1L), which function as histone-lysine N-methyltransferases. SETD2 specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. NSD2 shows histone H3 'Lys-27' (H3K27me) methyltransferase activity. ASH1L specifically methylates 'Lys-36' of histone H3 (H3K36me). The family also includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins.

Pssm-ID: 380929 Cd Length: 136 Bit Score: 217.51 E-value: 1.96e-65

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1062 KIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQ 1141
Cdd:cd10531    3 ELFRTEKKGWGVKAKEDIQKGEFIIEYVGEVIDKKEFKERLDEYEELGKSNFYILSLSDDVVIDATRKGNLSRFINHSCE 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478 1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCS 1195
Cdd:cd10531   83 PNCETQKWIVNGEYRIGIFALRDIPAGEELTFDYNFVNYNEAKQVCLCGAQNCR 136

PWWP_NSD2_rpt2

cd20165

second PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar ...

876-970

5.44e-65

Pssm-ID: 438993 Cd Length: 96 Bit Score: 214.44 E-value: 5.44e-65

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  876 KYRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQQ-TGIGKVF 954
Cdd:cd20165    1 RFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQKMKHEIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSKYQGgKGIGKVF 80

                         90
                 ....*....|....*.
gi 86278478  955 KNALLDAETRFKEIEM 970
Cdd:cd20165   81 KNALQEAEARFREIKL 96

SET_ASHR3-like

cd19175

SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 ...

1062-1199

1.38e-55

SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins; This family includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3, also termed protein SET DOMAIN GROUP 4 or protein stamen loss), ASH1 homolog 3 (ASHH3, also termed protein SET DOMAIN GROUP 7) and homolog 4 (ASHH4, also termed protein SET DOMAIN GROUP 24). They all function as histone-lysine N-methyltransferases (EC 2.1.1.43).

Pssm-ID: 380952 [Multi-domain] Cd Length: 139 Bit Score: 189.55 E-value: 1.38e-55

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1062 KIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQ 1141
Cdd:cd19175    3 KLVKTEKCGWGLVADEDINAGEFIIEYVGEVIDDKTCEERLWDMKHKGEKNFYMCEIDKDMVIDATFKGNLSRFINHSCD 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 86278478 1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTvCRCGAPNCSGFLG 1199
Cdd:cd19175   83 PNCELQKWQVDGETRIGVFAIRDIKKGEELTYDYQFVQFGADQD-CHCGSKNCRGKLG 139

SET_ASH1L

cd19174

SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ...

1062-1199

1.11e-53

SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ASH1L (EC 2.1.1.43; also termed absent small and homeotic disks protein 1 homolog, KMT2H, or lysine N-methyltransferase 2H) acts as histone-lysine N-methyltransferase that specifically methylates 'Lys-36' of histone H3 (H3K36me). It plays important roles in development; heterozygous mutation of ASH1L is associated with severe intellectual disability (ID) and multiple congenital anomaly (MCA).

Pssm-ID: 380951 [Multi-domain] Cd Length: 141 Bit Score: 184.03 E-value: 1.11e-53

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1062 KIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIrHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQ 1141
Cdd:cd19174    3 ERFRTEDKGWGVRTKEPIKAGQFIIEYVGEVVSEQEFRRRM-IEQYHNHSHHYCLNLDSGMVIDGYRMGNEARFVNHSCD 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 86278478 1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEK-TVCRCGAPNCSGFLG 1199
Cdd:cd19174   82 PNCEMQKWSVNGVYRIGLFALKDIPAGEELTYDYNFHSFNVEKqQPCKCGSPNCRGVIG 140

PWWP_NSD1_rpt2

cd20164

second PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) ...

877-969

1.53e-47

second PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1, also called H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, androgen receptor coactivator 267 kDa protein, androgen receptor-associated protein of 267 kDa, H3-K36-HMTase H4-K20-HMTase, Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. This model corresponds to the second PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438992 Cd Length: 96 Bit Score: 164.66 E-value: 1.53e-47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  877 YRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQQ-TGIGKVFK 955
Cdd:cd20164    2 YKEVVWVKVGRYRWWPAEVCHPKSIPTNIQKMKHDIGEFPVLFFGSNDYLWTHQARVFPYMEGDVSSKDKMgKGVDGTYK 81

                         90
                 ....*....|....
gi 86278478  956 NALLDAETRFKEIE 969
Cdd:cd20164   82 KALQEAAVRFEELK 95

PWWP_NSD_rpt2

cd05838

second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

877-969

1.21e-46

second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the second PWWP domain. The family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438963 [Multi-domain] Cd Length: 96 Bit Score: 162.02 E-value: 1.21e-46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  877 YRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQ-QTGIGKVFK 955
Cdd:cd05838    2 YGDIVWVKLGNYRWWPAEILHPREVPDNIQSLPHPPGEFPVRFFGSHDYYWVHRGRVFLFEEGDKGSKEKsKKSLDKSFK 81

                         90
                 ....*....|....
gi 86278478  956 NALLDAETRFKEIE 969
Cdd:cd05838   82 RALKEANEAFRELK 95

PWWP_NSD3_rpt2

cd20166

second PWWP domain found in nuclear SET domain-containing protein 3 (NSD3) and similar ...

876-969

9.71e-46

second PWWP domain found in nuclear SET domain-containing protein 3 (NSD3) and similar proteins; NSD3, also called histone-lysine N-methyltransferase NSD3, protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant-homeodomain (PHD) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. This model corresponds to the second PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438994 Cd Length: 95 Bit Score: 159.37 E-value: 9.71e-46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  876 KYRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQQTGIGKVFK 955
Cdd:cd20166    1 HYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDIGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEGQTSINKTFK 80

                         90
                 ....*....|....
gi 86278478  956 NALLDAETRFKEIE 969
Cdd:cd20166   81 KALEEAAKRFQELK 94

PWWP_NSD_rpt1

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

190-298

1.02e-45

Pssm-ID: 438972 Cd Length: 114 Bit Score: 160.17 E-value: 1.02e-45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  190 VGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKV-NSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRSNQLP 268
Cdd:cd20144    1 VGDLVWAKVSGHPWWPCMVTYDPESGLYTKIKGsGGRTYRQYHVQFFGDNGERGWVSEKSLMPFEGKEKFEELVKELKKK 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 86278478  269 INISGRKRA----VPRKFRQKWEIGVSQAKEALG 298
Cdd:cd20144   81 AKKKSKKAKlekkVKPSRRKKWEIAVEEAEEALP 114

SET

smart00317

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...

1059-1182

2.63e-44

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues

Pssm-ID: 214614 [Multi-domain] Cd Length: 124 Bit Score: 156.34 E-value: 2.63e-44

                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    1059 PETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNH 1138
Cdd:smart00317    1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDIDSDLCIDARRKGNLARFINH 80

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
gi 86278478    1139 SCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGN 1182
Cdd:smart00317   81 SCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSDYANE 124

PWWP_NSD2_rpt1

cd20162

first PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; ...

188-311

3.78e-43

first PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2, also called histone-lysine N-methyltransferase NSD2, multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD domains mediate chromatin interaction and recognition of histone marks. This model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438990 Cd Length: 128 Bit Score: 153.53 E-value: 3.78e-43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKVNSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSR--SN 265
Cdd:cd20162    1 YNVGDLVWSKVSGYPWWPCMVSADPLLHSHTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVPFEGEGQFEQLCQesAK 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 86278478  266 QLPINISGRK--RAVPRKFRQKWEIGVSQAKEALGLLTEERLAKFSFV 311
Cdd:cd20162   81 QAPTKAEKIKllKPISGKLRAQWDMGIVQAEEAASMTVEERKAKFTFL 128

SET_SETD1-like

cd10518

SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), ...

1070-1194

5.95e-37

SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).

Pssm-ID: 380916 Cd Length: 150 Bit Score: 136.57 E-value: 5.95e-37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKW 1149
Cdd:cd10518   25 GWGLFAKRPIAAGEMVIEYVGEVIRPIVADKREKRYDEEGGGGTYMFRIDEDLVIDATKKGNIARFINHSCDPNCYAKII 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 86278478 1150 TVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNC 1194
Cdd:cd10518  105 TVDGEKHIVIFAKRDIAPGEELTYDYKFPIEDEEKIPCLCGAPNC 149

PWWP_NSD3_rpt1

cd20163

first PWWP domain found in nuclear SET domain-containing protein 3 (NSD3) and similar proteins; ...

188-314

3.12e-35

first PWWP domain found in nuclear SET domain-containing protein 3 (NSD3) and similar proteins; NSD3, also called histone-lysine N-methyltransferase NSD3, protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant-homeodomain (PHD) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. This model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438991 Cd Length: 130 Bit Score: 130.82 E-value: 3.12e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHfrSKVNSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSL----SR 263
Cdd:cd20163    1 FQVGDLVWSKVGTYPWWPCMVSSDPQLEVH--TKINTRGAREYHVQFFSSQPERAWVHEKRVREYKGHKQYEELlaeaTK 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 86278478  264 SNQLPINISGRKRAVPRKFRQKWEIGVSQAKEALGLLTEERLAKFSFVYED 314
Cdd:cd20163   79 QASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTFIYID 129

SET

COG2940

SET domain-containing protein (function unknown) [General function prediction only];

1056-1196

1.20e-34

SET domain-containing protein (function unknown) [General function prediction only];

Pssm-ID: 442183 [Multi-domain] Cd Length: 134 Bit Score: 129.31 E-value: 1.20e-34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1056 RLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHaqeNDITHFYMLTIDKDRIIDAGPKGNYSRF 1135
Cdd:COG2940    3 MLHPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERREPH---KEPLHTYLFELDDDGVIDGALGGNPARF 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 86278478 1136 MNHSCQPNCEtqkwTVNGDTRVGLFAVCDIPAGTELTFNYNLDClGNEKTVCRCgaPNCSG 1196
Cdd:COG2940   80 INHSCDPNCE----ADEEDGRIFIVALRDIAAGEELTYDYGLDY-DEEEYPCRC--PNCRG 133

SET_SETMAR

cd10544

SET domain (including pre-SET and post-SET domains) found in SET domain and mariner ...

985-1198

1.55e-33

SET domain (including pre-SET and post-SET domains) found in SET domain and mariner transposase fusion protein (SETMAR) and similar proteins; SETMAR (also termed metnase) is a DNA-binding protein that is indirectly recruited to sites of DNA damage through protein-protein interactions. It has a sequence-specific DNA-binding activity recognizing the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element and displays a DNA nicking and end joining activity. SETMAR also acts as a histone-lysine N-methyltransferase that methylates 'Lys-4' and 'Lys-36' of histone H3. It specifically mediates dimethylation of H3 'Lys-36' at sites of DNA double-strand break and may recruit proteins required for efficient DSB repair through non-homologous end-joining.

Pssm-ID: 380942 [Multi-domain] Cd Length: 254 Bit Score: 130.50 E-value: 1.55e-33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  985 PPFKYIKVNKPCGRVQVytaDISEI--PKCNCKPSterPCSFESE-CL---------NRMLL----------YECHPQvC 1042
Cdd:cd10544    1 PDFQYTPENVPGPGADT---DPNEItfPGCDCKTS---SCEPETCsCLrkygpnyddDGCLLdfdgkysgpvFECNSM-C 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1043 PAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThfYMLTIDKDR 1122
Cdd:cd10544   74 KCSESCQNRVVQNGLQFKLQVFKTPKKGWGLRTLEFIPKGRFVCEYAGEVIGFEEARRRTKSQTKGDMN--YIIVLREHL 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1123 --------IIDAGPKGNYSRFMNHSCQPNCETQKWTVNGDT-RVGLFAVCDIPAGTELTFNY-------------NLDCL 1180
Cdd:cd10544  152 ssgkvletFVDPTYIGNIGRFLNHSCEPNLFMVPVRVDSMVpKLALFAARDIVAGEELSFDYsgefsnsvesvtlARQDE 231

                        250
                 ....*....|....*...
gi 86278478 1181 GNEKTVCRCGAPNCSGFL 1198
Cdd:cd10544  232 SKSRKPCLCGAENCRGFL 249

SET_SUV39H

cd10542

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...

985-1198

1.10e-32

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins; This family includes SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. Also included are Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (SUV39H homolog) and Neurospora crassa DIM-5, both of which also methylate 'Lys-9' of histone H3.

Pssm-ID: 380940 [Multi-domain] Cd Length: 245 Bit Score: 127.79 E-value: 1.10e-32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  985 PPFKYIKVNKPCgrvQVYTADISEIPKCNCKPsterPCSFESE--CLNRML------------------LYECHPQvCPA 1044
Cdd:cd10542    1 PNFQYINDYIPG---DGVKIPEDFLVGCECTE----DCHNNNPtcCPAESGvkfaydkqgrlrlppgtpIYECNSR-CKC 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1045 GERCQNQDFTK-RLYPETkIIRTA-GKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDR 1122
Cdd:cd10542   73 GPDCPNRVVQRgRKVPLC-IFRTSnGRGWGVKTLEDIKKGTFVMEYVGEIITSEEAERRGKIYDANGRTYLFDLDYNDDD 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1123 ---IIDAGPKGNYSRFMNHSCQPNCET-QKWTVNGDT---RVGLFAVCDIPAGTELTFNYNLDCLGN-----------EK 1184
Cdd:cd10542  152 ceyTVDAAYYGNISHFINHSCDPNLAVyAVWINHLDPrlpRIAFFAKRDIKAGEELTFDYLMTGTGGssestipkpkdVR 231

                        250
                 ....*....|....
gi 86278478 1185 TVCRCGAPNCSGFL 1198
Cdd:cd10542  232 VPCLCGSKNCRKYL 245

SET_SETDB-like

cd10538

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...

985-1176

1.42e-32

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2, and similar proteins; The family includes SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2. SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis. SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. This family also includes the pre-SET domain, which is found in a number of histone methyltransferases (HMTase), N-terminal to the SET domain. Pre-SET domain is a zinc binding motif which contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilizing SET domains. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.

Pssm-ID: 380936 [Multi-domain] Cd Length: 217 Bit Score: 126.33 E-value: 1.42e-32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  985 PPFKYIKVNKPCGRVQVYtADISEIPKCNCKPS-TERPCSFESECLNRM---------------LLYECHPQvCPAGERC 1048
Cdd:cd10538    1 PSFTYIKDNIVGKNVQPF-SNIIDSVGCKCKDDcLDSKCACAAESDGIFaytkngllrlnnsppPIFECNSK-CSCDDDC 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1049 QNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThfYMLTIDKDR------ 1122
Cdd:cd10538   79 KNRVVQRGLQARLQVFRTSKKGWGVRSLEFIPKGSFVCEYVGEVITTSEADRRGKIYDKSGGS--YLFDLDEFSdsdgdg 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 86278478 1123 ---IIDAGPKGNYSRFMNHSCQPNCETQK-WTVNGDT---RVGLFAVCDIPAGTELTFNYN 1176
Cdd:cd10538  157 eelCVDATFCGNVSRFINHSCDPNLFPFNvVIDHDDLrypRIALFATRDILPGEELTFDYG 217

SET

pfam00856

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...

1070-1176

5.65e-32

Pssm-ID: 459965 [Multi-domain] Cd Length: 115 Bit Score: 121.09 E-value: 5.65e-32

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478   1070 GWGLISLRDIKKGEFVNEYVGE-LIDEEECRSRIRHAQENDIT---HFYMLTIDKD--RIID--AGPKGNYSRFMNHSCQ 1141
Cdd:pfam00856    1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELrlwGPYLFTLDEDseYCIDarALYYGNWARFINHSCD 80

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 86278478   1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:pfam00856   81 PNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDYG 115

SET_EZH

cd10519

SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar ...

1070-1175

2.27e-31

SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both, EZH1 and EZH2, can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.

Pssm-ID: 380917 Cd Length: 117 Bit Score: 119.27 E-value: 2.27e-31

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELI--DEEECRSRIRHaqenDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQ 1147
Cdd:cd10519   12 GWGLFLKEPIKKDEFIGEYTGELIsqDEADRRGKIYD----KYNSSYLFNLNDQFVVDATRKGNKIRFANHSSNPNCYAK 87

                         90       100
                 ....*....|....*....|....*...
gi 86278478 1148 KWTVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd10519   88 VMMVNGDHRIGIFAKRDIEAGEELFFDY 115

SET_KMT2C_2D

cd19171

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), ...

1065-1194

1.48e-29

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), 2D (KMT2D) and similar proteins; This family includes KMT2C and KMT2D. Both, KMT2C (also termed HALR or MLL3) and KMT2D (also termed ALR or MLL2), act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me). They are subunits of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.

Pssm-ID: 380948 [Multi-domain] Cd Length: 153 Bit Score: 115.60 E-value: 1.48e-29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1065 RTAGKGWGLISLRDIKKGEFVNEYVGELIDEE--ECRSRIRHAQENDIthfYMLTIDKDRIIDAGPKGNYSRFMNHSCQP 1142
Cdd:cd19171   20 RSRIQGLGLYAARDIEKHTMVIEYIGEIIRNEvaNRREKIYESQNRGI---YMFRIDNDWVIDATMTGGPARYINHSCNP 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 86278478 1143 NCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNE-KTVCRCGAPNC 1194
Cdd:cd19171   97 NCVAEVVTFDKEKKIIIISNRRIAKGEELTYDYKFDFEDDQhKIPCLCGAPNC 149

SET_SETD1

cd19169

SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and ...

1070-1194

5.55e-29

SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A) and SET domain-containing protein 1B (SETD1B). These proteins are histone-lysine N-methyltransferases that specifically methylate 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated.

Pssm-ID: 380946 Cd Length: 148 Bit Score: 113.59 E-value: 5.55e-29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKW 1149
Cdd:cd19169   24 DWGLFALEPIAADEMVIEYVGQVIRQSVADEREKRYEAIGIGSSYLFRVDDDTIIDATKCGNLARFINHSCNPNCYAKII 103

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 86278478 1150 TVNGDTRVGLFAVCDIPAGTELTFNYNLDcLGNEKTVCRCGAPNC 1194
Cdd:cd19169  104 TVESQKKIVIYSKRPIAVNEEITYDYKFP-IEDEKIPCLCGAPQC 147

SET_SUV39H_DIM5-like

cd19473

SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; ...

1031-1198

2.31e-28

SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; This subfamily contains Neurospora crassa DIM-5 (also termed H3-K9-HMTase dim-5, or HKMT) which functions as histone-lysine N-methyltransferase that specifically trimethylates histone H3 to form H3K9me3.

Pssm-ID: 380996 [Multi-domain] Cd Length: 274 Bit Score: 115.88 E-value: 2.31e-28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1031 RMLLYECHPQvCPAGERCQNQDFTK-RLYPeTKIIRTA-GKGWGLISLRDIKKGEFVNEYVGELIDEEECRSR---IRHA 1105
Cdd:cd19473   78 RLPIYECHEG-CACSDDCPNRVVERgRKVP-LQIFRTSdGRGWGVRSTVDIKRGQFVDCYVGEIITPEEAQRRrdaATIA 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1106 QENDIthfYMLTIDK--------DRI------ID----AGPkgnySRFMNHSCQPNCETQkwtvngdTRVG--------- 1158
Cdd:cd19473  156 QRKDV---YLFALDKfsdpdsldPRLrgdpyeIDgefmSGP----TRFINHSCDPNLRIF-------ARVGdhadkhihd 221

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 86278478 1159 --LFAVCDIPAGTELTFNY-----------NLDCLGNEKTVCRCGAPNCSGFL 1198
Cdd:cd19473  222 laFFAIKDIPRGTELTFDYvdgvtgldddaGDEEKEKEMTKCLCGSPKCRGYL 274

SET_SET1

cd20072

SET domain (including post-SET domain) found in catalytic component of the Saccharomyces ...

1062-1194

3.45e-28

SET domain (including post-SET domain) found in catalytic component of the Saccharomyces cerevisiae COMPASS complex and similar proteins; The family contains mostly fungal SET domains, including SET1 found in the catalytic component of the Saccharomyces cerevisiae COMPASS (complex of proteins associated with Set1). SET1 is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex. The activity of this catalytic domain is established through forming a complex with a set of core proteins; it is extensively contacted by Cps60 (Bre2), Cps50 (Swd1), and Cps30 (Swd3).

Pssm-ID: 380998 Cd Length: 148 Bit Score: 111.36 E-value: 3.45e-28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1062 KIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQ 1141
Cdd:cd20072   16 KFARSAIHNWGLYAMENISAKDMVIEYVGEVIRQQVADEREKRYLRQGIGSSYLFRIDDDTVVDATKKGNIARFINHCCD 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 86278478 1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDcLGNEKTVCRCGAPNC 1194
Cdd:cd20072   96 PNCTAKIIKVEGEKRIVIYAKRDIAAGEELTYDYKFP-REEDKIPCLCGAPNC 147

SET_KMT2A_2B

cd19170

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), ...

1055-1198

1.37e-26

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B) and similar proteins; This family includes KMT2A and KMT2B. Both KMT2A (also termed ALL-1 or CXXC7 or MLL or MLL1 or TRX1 or HRX) and KMT2B (also termed MLL4 or TRX2) act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me).

Pssm-ID: 380947 [Multi-domain] Cd Length: 152 Bit Score: 107.09 E-value: 1.37e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1055 KRLYPETKII-RTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThFYMLTIDKDRIIDAGPKGNYS 1133
Cdd:cd19170    9 RKTAKEAVGVyRSPIHGRGLFCKRNIDAGEMVIEYAGEVIRSVLTDKREKYYESKGIG-CYMFRIDDDEVVDATMHGNAA 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 86278478 1134 RFMNHSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDcLGNEKTVCRCGAPNCSGFL 1198
Cdd:cd19170   88 RFINHSCEPNCYSRVVNIDGKKHIVIFALRRILRGEELTYDYKFP-IEDVKIPCTCGSKKCRKYL 151

PHD3_NSD2

cd15654

PHD finger 3 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

760-813

2.82e-26

Pssm-ID: 277124 Cd Length: 54 Bit Score: 102.62 E-value: 2.82e-26

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478  760 TCLSCHYSGRAACKATKGKMMRCLRCPVAYHVGDLCVAAGSEMISSSAIVCTNH 813
Cdd:cd15654    1 SCVSCHASNPSNPRATKGKMMRCVRCPVAYHGGDLCIAAGCAVLTSNSIICTNH 54

SET_SUV39H2

cd10532

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...

1034-1198

1.38e-25

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 2 (SUV39H2) and similar proteins; SUV39H2 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B (KMT1B), or Su(var)3-9 homolog 2) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.

Pssm-ID: 380930 [Multi-domain] Cd Length: 243 Bit Score: 107.28 E-value: 1.38e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1034 LYECHPQvCPAGERCQNQDFTKRLYPETKIIRTA-GKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITH 1112
Cdd:cd10532   60 IYECNSR-CKCGPDCPNRVVQKGTQYSLCIFRTSnGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQFYDSKGITY 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1113 FYMLTIDKDRI-IDAGPKGNYSRFMNHSCQPNceTQKWTV---NGDT---RVGLFAVCDIPAGTELTFNYNLDCLGNE-- 1183
Cdd:cd10532  139 LFDLDYESDEFtVDAARYGNVSHFVNHSCDPN--LQVFNVfidNLDTrlpRIALFSTRTIKAGEELTFDYQMKGSGDLss 216

                        170       180
                 ....*....|....*....|....*..
gi 86278478 1184 ------------KTVCRCGAPNCSGFL 1198
Cdd:cd10532  217 dsidnspakkrvRTVCKCGAVTCRGYL 243

SET_SETDB1

cd10517

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...

980-1198

3.54e-25

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes.

Pssm-ID: 380915 [Multi-domain] Cd Length: 288 Bit Score: 106.99 E-value: 3.54e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  980 NNKKPPPFKYIKVNKPCGRVQVY-----------TADISEIPKCNCKPSTERPCS------------FESECLNRML--- 1033
Cdd:cd10517   25 DNSSPPYVEYSKERIPGKGVNINldpdflvgcdcTDGCRDKSKCACQQLTIEATAatpggqinpsagYQYRRLMEKLptg 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1034 LYECHPQvCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRsriRHAQENDITHF 1113
Cdd:cd10517  105 VYECNSR-CKCDKRCYNRVVQNGLQVRLQVFKTEKKGWGIRCLDDIPKGSFVCIYAGQILTEDEAN---EEGLQYGDEYF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1114 ----YMLTIDKDR------------IIDAGPKGNYSRFMNHSCQPNCETQKWTVNG-DTR---VGLFAVCDIPAGTELTF 1173
Cdd:cd10517  181 aeldYIEVVEKLKegyesdveehcyIIDAKSEGNLGRYLNHSCSPNLFVQNVFVDThDLRfpwVAFFASRYIRAGTELTW 260

                        250       260
                 ....*....|....*....|....*..
gi 86278478 1174 NYN--LDCLGNEKTVCRCGAPNCSGFL 1198
Cdd:cd10517  261 DYNyeVGSVPGKVLYCYCGSSNCRGRL 287

PHD5_NSD2

cd15660

PHD finger 5 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

1234-1276

2.31e-24

Pssm-ID: 277130 Cd Length: 43 Bit Score: 96.54 E-value: 2.31e-24

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1234 ECFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15660    1 ECFRCGDGGQLVLCDRKSCTKAYHLSCLGLTKRPFGKWECPWH 43

SET_LegAS4-like

cd10522

SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and ...

1067-1176

2.44e-24

SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins; LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.

Pssm-ID: 380920 [Multi-domain] Cd Length: 122 Bit Score: 99.34 E-value: 2.44e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1067 AGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDithfYMLTIDKD-RIIDAGPKGNYSRFMNHSCQPNCE 1145
Cdd:cd10522   11 SHNGLGLFAAETIAKGEFVGEYTGEVLDRWEEDRDSVYHYDPL----YPFDLNGDiLVIDAGKKGNLTRFINHSDQPNLE 86

                         90       100       110
                 ....*....|....*....|....*....|.
gi 86278478 1146 TQKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:cd10522   87 LIVRTLKGEQHIGFVAIRDIKPGEELFISYG 117

PWWP_NSD1_rpt1

cd20161

first PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and ...

186-297

9.09e-24

first PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1, also called H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, androgen receptor coactivator 267 kDa protein, androgen receptor-associated protein of 267 kDa, H3-K36-HMTase H4-K20-HMTase, Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. The model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438989 Cd Length: 116 Bit Score: 97.54 E-value: 9.09e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  186 VHFSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKV-NSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRS 264
Cdd:cd20161    2 VKYEVGDLVWAKFSRRPWWPCRICADPLLDTHSKMKVpSRRPCRQYYVETLGELTEKAWVAAKAVVPFEGRHQFEELPVL 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 86278478  265 NQLPINIS-GRKRAVPRKFRQKWEIGVSQAKEAL 297
Cdd:cd20161   82 RRRGKQKEkDYKHKIPQKLLSLWEASVAHAEDFL 115

SET_EHMT

cd10543

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...

1010-1194

9.95e-24

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase EHMT1, EHMT2 and similar proteins; This family includes EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.

Pssm-ID: 380941 [Multi-domain] Cd Length: 231 Bit Score: 101.26 E-value: 9.95e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1010 PKCNCKPSTERpCSFESECL--------NRMLLYECHPqVCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKK 1081
Cdd:cd10543   36 DNCVCGRLSVR-CWYDKEGRllpdfnklDPPLIFECNR-ACSCWRNCRNRVVQNGIRYRLQLFRTRGMGWGVRALQDIPK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1082 GEFVNEYVGELIDEEECRSRirhaqENDITHFYMLTIDKD-RIIDAGPKGNYSRFMNHSCQPNCETQKWTVNGDT----R 1156
Cdd:cd10543  114 GTFVCEYIGELISDSEADSR-----EDDSYLFDLDNKDGEtYCIDARRYGNISRFINHLCEPNLIPVRVFVEHQDlrfpR 188

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 86278478 1157 VGLFAVCDIPAGTELTFNYN---LDCLGNEKTvCRCGAPNC 1194
Cdd:cd10543  189 IAFFASRDIKAGEELGFDYGekfWRIKGKYFT-CRCGSPKC 228

PWWP

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...

879-966

2.30e-22

Pssm-ID: 459964 [Multi-domain] Cd Length: 92 Bit Score: 92.49 E-value: 2.30e-22

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    879 DVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGD---RGSKYQQTGIGKVFK 955
Cdd:pfam00855    2 DLVWAKLKGYPWWPARVVDPEELPENVLKPKKKDGEYLVRFFGDSEFAWVKPKDLKPFDEGDefeYLKKKKKKKKKKAFK 81

                           90
                   ....*....|.
gi 86278478    956 NALLDAETRFK 966
Cdd:pfam00855   82 KALEEAEEALK 92

PHD4_NSD2

cd15657

PHD finger 4 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

830-870

3.59e-22

Pssm-ID: 277127 Cd Length: 41 Bit Score: 90.45 E-value: 3.59e-22

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMPDGSWFCNDCR 870
Cdd:cd15657    1 WCFVCSKGGSLLCCESCPAAFHPDCLNIEMPDGSWFCNDCR 41

SET_AtSUVH-like

cd10545

SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar ...

1033-1176

1.15e-21

SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar proteins; Arabidopsis thaliana SUVH protein (also termed suppressor of variegation 3-9 homolog protein) is a histone-lysine N-methyltransferase that methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Some family members contain a post-SET domain which binds a Zn2+ ion. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.

Pssm-ID: 380943 [Multi-domain] Cd Length: 232 Bit Score: 95.55 E-value: 1.15e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1033 LLYECHPQvCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRhaqeNDITH 1112
Cdd:cd10545   61 AIYECGPL-CKCPPSCYNRVTQKGLRYRLEVFKTAERGWGVRSWDSIPAGSFICEYVGELLDTSEADTRSG----NDDYL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1113 FYML----------------------------TIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKWTV-NGDTR---VGLF 1160
Cdd:cd10545  136 FDIDnrqtnrgwdggqrldvgmsdgerssaedEESSEFTIDAGSFGNVARFINHSCSPNLFVQCVLYdHNDLRlprVMLF 215

                        170
                 ....*....|....*.
gi 86278478 1161 AVCDIPAGTELTFNYN 1176
Cdd:cd10545  216 AADNIPPLQELTYDYG 231

SET_SUV39H_Clr4-like

cd20073

SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 ...

1005-1198

1.76e-21

SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 methyltransferase Clr4, and similar proteins; This subfamily contains fission yeast Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (also known as Suv39h), the sole homolog of the mammalian SUV39H1 and SUV39H2 enzymes, that has a critical role in preventing aberrant heterochromatin formation. It is known to di- and tri-methylate Lys-9 of histone H3, a central heterochromatic histone modification, with its specificity profile most similar to that of the human SUV39H2 homolog.

Pssm-ID: 380999 [Multi-domain] Cd Length: 259 Bit Score: 95.72 E-value: 1.76e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1005 DISEIPKCNC-KPSTERPCSFESE----CLNRMLLYECHpQVCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDI 1079
Cdd:cd20073   35 DLNNPGSCQClEDSNEKSFAYDEYgrvrANTGSIIYECN-ENCDCGINCPNRVVQRGRKLPLEIFKTKHKGWGLRCPRFI 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1080 KKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRI-----IDAGPKGNYSRFMNHSCQPNCETQKWTVNGD 1154
Cdd:cd20073  114 KAGTFIGVYLGEVITQSEAEIRGKKYDNVGVTYLFDLDLFEDQVdeyytVDAQYCGDVTRFINHSCDPNLAIYSVLRDKS 193

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 86278478 1155 TR----VGLFAVCDIPAGTELTFNY----NLDCLGNE-------------KTVCRCGAPNCSGFL 1198
Cdd:cd20073  194 DSkiydLAFFAIKDIPALEELTFDYsgrnNFDQLGFIgnrsnskyinlknKRPCYCGSANCRGWL 258

PWWP_MSH6

cd05837

PWWP domain found in DNA mismatch repair protein MSH6 and similar proteins; MSH6, also called ...

188-307

2.67e-21

PWWP domain found in DNA mismatch repair protein MSH6 and similar proteins; MSH6, also called G/T mismatch-binding protein (GTBP or GTMBP), MutS protein homolog 6, or MutS-alpha 160 kDa subunit (p160), is a mismatch repair protein homologous to bacterial MutS. It is a component of the post-replicative DNA mismatch repair system (MMR). It heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, it forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. MSH6 contains a PWWP domain, but its role in MSH6 remains unclear. MSH6 orthologs found in Saccharomyces cerevisiae, Caenorhabditis elegans, and Arabidopsis thaliana lack the PWWP domain. PWWP domains typically recognize DNA and histone methylated lysines.

Pssm-ID: 438962 Cd Length: 103 Bit Score: 90.04 E-value: 2.67e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKVNSRtgllYHVQYFGDTPERGYVFEKCIVTFSGkhqyqslsrsnql 267
Cdd:cd05837    1 FSPGDLVWAKLEGYPWWPSLVCNHPTTGFHKKFGKKGE----VHVQFFDDPPSRAWVKAKNVKPFTG------------- 63

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 86278478  268 PINISGRKRAVPRKFRQKWEIGVSQAKEALGLLTEERLAK 307
Cdd:cd05837   64 SDDKEFQKGGMFFSKDPKWKKAVKEADKALKLSVEERLKL 103

PHD2_NSD2

cd15651

PHD finger 2 found in nuclear SET domain-containing protein 2 (NSD2); NSD2, also termed ...

713-759

2.89e-21

Pssm-ID: 277121 Cd Length: 47 Bit Score: 87.98 E-value: 2.89e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 86278478  713 VCFTCKKSEGEVRRCCALHCGRFYHEACVRLSALTVFENRGFRCPLH 759
Cdd:cd15651    1 SCFVCKESKGDVKRCVVLHCGKFYHEACVRKYPLTVFENRGFRCPLH 47

PHD5_NSD

cd15568

PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

1234-1276

4.72e-21

PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the fifth PHD finger.

Pssm-ID: 277043 [Multi-domain] Cd Length: 43 Bit Score: 87.38 E-value: 4.72e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1234 ECFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15568    1 ECFRCGDGGDLVLCDFKGCPKVYHLSCLGLEKPPGGKWICPWH 43

SET_SUV39H1

cd10525

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...

1034-1198

4.73e-21

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 1 (SUV39H1) and similar proteins; SUV39H1 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A (KMT1A), position-effect variegation 3-9 homolog (SUV39H), or Su(var)3-9 homolog 1) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.

Pssm-ID: 380923 [Multi-domain] Cd Length: 255 Bit Score: 94.19 E-value: 4.73e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1034 LYECHPQvCPAGERCQNQDFTKRLYPETKIIRTA-GKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITH 1112
Cdd:cd10525   62 IYECNSR-CRCGPDCPNRVVQKGIQYDLCIFRTDnGRGWGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATY 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1113 FYMLT-IDKDRIIDAGPKGNYSRFMNHSCQPNceTQKWTVNGDT------RVGLFAVCDIPAGTELTFNYNL--DCLGNE 1183
Cdd:cd10525  141 LFDLDyVEDVYTVDAAYYGNISHFVNHSCDPN--LQVYNVFIDNlderlpRIALFATRTIRAGEELTFDYNMqvDPVDAE 218

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 86278478 1184 KTV---------------------CRCGAPNCSGFL 1198
Cdd:cd10525  219 STKmdsnfglaglpgspkkrvrieCKCGVRSCRKYL 254

SET_SETD1B

cd19205

SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and ...

1060-1198

5.77e-21

SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and similar proteins; SETD1B (EC2.1.1.43), also termed lysine N-methyltransferase 2G, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Loss of SETD1B occurs in up to half the gastric and colorectal cancers, most commonly via SETD1B mutations, while de novo variants in SETD1B are associated with intellectual disability, epilepsy and autism.

Pssm-ID: 380982 [Multi-domain] Cd Length: 153 Bit Score: 90.88 E-value: 5.77e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1060 ETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHS 1139
Cdd:cd19205   15 KLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHS 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 86278478 1140 CQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDcLGNEKTVCRCGAPNCSGFL 1198
Cdd:cd19205   95 CNPNCYAKVITVESQKKIVIYSKQHINVNEEITYDYKFP-IEDVKIPCLCGSENCRGTL 152

SET_EHMT1

cd10535

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...

1033-1194

6.53e-21

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 1 (EHMT1) and similar proteins; EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, or lysine N-methyltransferase 1D (KMT1D)) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.

Pssm-ID: 380933 [Multi-domain] Cd Length: 231 Bit Score: 93.07 E-value: 6.53e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1033 LLYECHpQVCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRirhaqENDIth 1112
Cdd:cd10535   66 LIFECN-HACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-----EEDS-- 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1113 fYMLTID-KDR---IIDAGPKGNYSRFMNHSCQPN-CETQKWTVNGD---TRVGLFAVCDIPAGTELTFNYN---LDCLG 1181
Cdd:cd10535  138 -YLFDLDnKDGevyCIDARFYGNVSRFINHHCEPNlVPVRVFMAHQDlrfPRIAFFSTRLIEAGEQLGFDYGerfWDIKG 216

                        170
                 ....*....|...
gi 86278478 1182 NEKTvCRCGAPNC 1194
Cdd:cd10535  217 KLFS-CRCGSPKC 228

SET_EZH-like

cd19168

SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb ...

1070-1175

9.74e-21

SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb repressive complex 2 (PRC2), and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both EZH1 and EZH2 can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.

Pssm-ID: 380945 Cd Length: 124 Bit Score: 89.17 E-value: 9.74e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELI--DEEECRSRIRhaqeNDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQP----N 1143
Cdd:cd19168   13 GLGLFAAEDIKEGEFVIEYTGELIshDEGVRREHRR----GDVSYLYLFEEQEGIWVDAAIYGNLSRYINHATDKvktgN 88

                         90       100       110
                 ....*....|....*....|....*....|..
gi 86278478 1144 CETQKWTVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd19168   89 CMPKIMYVNHEWRIKFTAIKDIKIGEELFFNY 120

SET_SETD8

cd10528

SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2. ...

1061-1175

1.40e-20

SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2.1.1.43; also termed N-lysine methyltransferase KMT5A, H4-K20-HMTase KMT5A, lysine N-methyltransferase 5A, lysine-specific methylase 5A, PR/SET domain-containing protein 07, PR-Set7 or PR/SET07) is a nucleosomal histone-lysine N-methyltransferase that specifically monomethylates 'Lys-20' of histone H4 (H4K20me1). It plays a central role in the silencing of euchromatic genes.

Pssm-ID: 380926 [Multi-domain] Cd Length: 141 Bit Score: 89.17 E-value: 1.40e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1061 TKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTI---DKDRIIDA-GPKGNYSRFM 1136
Cdd:cd10528   19 LKVIEIDGKGRGVIATRPFEKGDFVVEYHGDLITITEAKKREALYAKDPSTGCYMYYFqykGKTYCVDAtKESGRLGRLI 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 86278478 1137 NHSCQ-PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd10528   99 NHSKKkPNLKTKLLVIDGVPHLILVAKRDIKPGEELLYDY 138

SET_EZH2

cd19218

SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43) ...

1070-1175

1.58e-20

SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43), also termed lysine N-methyltransferase 6, or ENX-1, or histone-lysine N-methyltransferase EZH2, is a catalytic subunit of the polycomb repressive complex 2 (PRC2)/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.

Pssm-ID: 380995 Cd Length: 120 Bit Score: 88.43 E-value: 1.58e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThfYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKW 1149
Cdd:cd19218   15 GWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCS--FLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVM 92

                         90       100
                 ....*....|....*....|....*.
gi 86278478 1150 TVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd19218   93 MVNGDHRIGIFAKRAIQTGEELFFDY 118

SET_KMT2A

cd19206

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) ...

1063-1198

2.24e-20

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) and similar proteins; KMT2A (EC2.1.1.43; also termed lysine N-methyltransferase 2A, ALL-1, CXXC-type zinc finger protein 7 (CXXC7), myeloid/lymphoid or mixed-lineage leukemia (MLL), myeloid/lymphoid or mixed-lineage leukemia protein 1 (MLL1), trithorax-like protein (TRX1), or zinc finger protein HRX) acts as a histone methyltransferase that plays an essential role in early development and hematopoiesis. It is a catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac).

Pssm-ID: 380983 [Multi-domain] Cd Length: 154 Bit Score: 89.31 E-value: 2.24e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1063 IIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThFYMLTIDKDRIIDAGPKGNYSRFMNHSCQP 1142
Cdd:cd19206   18 VYRSPIHGRGLFCKRNIDAGEMVIEYSGNVIRSILTDKREKYYDSKGIG-CYMFRIDDSEVVDATMHGNAARFINHSCEP 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 86278478 1143 NCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYN--LDCLGNeKTVCRCGAPNCSGFL 1198
Cdd:cd19206   97 NCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKfpIEDASN-KLPCNCGAKKCRKFL 153

PWWP_ZCWPW1

cd20145

PWWP domain found in zinc finger CW-type PWWP domain protein 1 (ZCWPW1) and similar proteins; ...

188-310

5.25e-20

PWWP domain found in zinc finger CW-type PWWP domain protein 1 (ZCWPW1) and similar proteins; ZCWPW1 is a histone H3K4me3 reader. It is associated with late-onset Alzheimer's disease (LOAD). In addition to the PWWP domain, ZCWPW1 contains a zinc finger CW (zf-CW) domain that is a histone modification reader for the histone H3 tail with trimethylated K4. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438973 Cd Length: 115 Bit Score: 86.83 E-value: 5.25e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKVNSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRSNQl 267
Cdd:cd20145    6 YTPGSLVWAKMPGYPWWPAMVEDDPDTEEFFWLDEESDIPTKYHVTFFDKPVSRAWVRASSIKPFTDNSNEPNLTKKKG- 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 86278478  268 pinisgrkravpRKFRQKWEIGVSQAKEALGLLTEERLAKFSF 310
Cdd:cd20145   85 ------------KKYKKRLNEAVEMAREALKLSIKERLKKFGF 115

PHD4_NSD3

cd15658

PHD finger 4 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

830-869

6.98e-20

PHD finger 4 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed histone-lysine N-methyltransferase NSD3, or protein whistle, or WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant-homeodomain (PHD) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the fourth PHD finger.

Pssm-ID: 277128 Cd Length: 40 Bit Score: 83.81 E-value: 6.98e-20

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMPDGSWFCNDC 869
Cdd:cd15658    1 FCFVCARGGRLLCCESCPASFHPECLSIEMPEGCWNCNEC 40

SET_EZH1

cd19217

SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43) ...

1070-1175

7.83e-20

SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43), also termed ENX-2, or histone-lysine N-methyltransferase EZH1, is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.

Pssm-ID: 380994 Cd Length: 136 Bit Score: 87.04 E-value: 7.83e-20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRhAQENDITHFyMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKW 1149
Cdd:cd19217   17 GWGTFIKESVQKNEFISEYCGELISQDEADRRGK-VYDKYMSSF-LFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVV 94

                         90       100
                 ....*....|....*....|....*.
gi 86278478 1150 TVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd19217   95 MVNGDHRIGIFAKRAIQQGEELFFDY 120

SET_SETD1A

cd19204

SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and ...

1071-1198

4.03e-19

SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and similar proteins; SETD1A (EC2.1.1.43), also termed lysine N-methyltransferase 2F, or Set1/Ash2 histone methyltransferase complex subunit SET1, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Human SET domain containing protein 1A (hSETD1A) expression occurs at a high rate in hepatocellular carcinoma patients and controls tumor metastasis in breast cancer by activating MMP expression.

Pssm-ID: 380981 [Multi-domain] Cd Length: 153 Bit Score: 85.46 E-value: 4.03e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1071 WGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKWT 1150
Cdd:cd19204   26 WGLFAMEPIAADEMVIEYVGQNIRQVVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVIT 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 86278478 1151 VNGDTRVGLFAVCDIPAGTELTFNYNLDcLGNEKTVCRCGAPNCSGFL 1198
Cdd:cd19204  106 IESQKKIVIYSKQPIGVNEEITYDYKFP-IEDNKIPCLCGTENCRGTL 152

PWWP

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

875-937

6.38e-19

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

Pssm-ID: 214603 [Multi-domain] Cd Length: 63 Bit Score: 82.01 E-value: 6.38e-19

                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86278478     875 PKYRDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYM 937
Cdd:smart00293    1 FKPGDLVWAKMKGFPWWPALVISPKMTPDNIMKRKSDENLYPVLFFGDKDTAWIPSSKLFPLT 63

SET_EHMT2

cd10533

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...

1033-1194

1.19e-18

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 2 (EHMT2) and similar proteins; EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C (KMT1C), or protein G9a) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.

Pssm-ID: 380931 [Multi-domain] Cd Length: 239 Bit Score: 86.99 E-value: 1.19e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1033 LLYECHpQVCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRirhaqENDITH 1112
Cdd:cd10533   66 LIFECN-QACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-----EDDSYL 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1113 FYMLTIDKD-RIIDAGPKGNYSRFMNHSCQPN-CETQKWTVNGD---TRVGLFAVCDIPAGTELTFNYNlDCLGNEKT-- 1185
Cdd:cd10533  140 FDLDNKDGEvYCIDARYYGNISRFINHLCDPNiIPVRVFMLHQDlrfPRIAFFSSRDIRTGEELGFDYG-DRFWDIKSky 218

                        170
                 ....*....|
gi 86278478 1186 -VCRCGAPNC 1194
Cdd:cd10533  219 fTCQCGSEKC 228

PHD5_NSD3

cd15661

PHD finger 5 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

1235-1276

1.44e-18

PHD finger 5 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed histone-lysine N-methyltransferase NSD3, or protein whistle, or WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant-homeodomain (PHD) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the fifth PHD finger.

Pssm-ID: 277131 Cd Length: 43 Bit Score: 80.40 E-value: 1.44e-18

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478 1235 CFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15661    2 CFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWH 43

PHD4_NSD

cd15567

PHD finger 4 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

830-869

2.54e-18

PHD finger 4 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the fourth PHD finger.

Pssm-ID: 277042 [Multi-domain] Cd Length: 41 Bit Score: 79.60 E-value: 2.54e-18

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNI-AMPDGSWFCNDC 869
Cdd:cd15567    1 WCFICSEGGSLICCESCPASFHPECLGLePPPEGKFYCEDC 41

SET_KMT2D

cd19209

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) ...

1055-1198

5.23e-18

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) and similar proteins; KMT2D (EC2.1.1.43; also termed lysine N-methyltransferase 2D, ALL1-related protein (ALR), or myeloid/lymphoid or mixed-lineage leukemia protein 2 (MLL2)), acts as histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription. KMT2D is a subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.

Pssm-ID: 380986 [Multi-domain] Cd Length: 155 Bit Score: 82.44 E-value: 5.23e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1055 KRLYPETK----IIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDiTHFYMLTIDKDRIIDAGPKG 1130
Cdd:cd19209    8 RRLKTEWKnnvyLARSRIQGLGLYAAKDLEKHTMVIEYIGTIIRNEVANRREKIYEEQN-RGIYMFRINNEHVIDATLTG 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 86278478 1131 NYSRFMNHSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV-CRCGAPNCSGFL 1198
Cdd:cd19209   87 GPARYINHSCAPNCVAEVVTFDKEDKIIIISSRRIPKGEELTYDYQFDFEDDQHKIpCHCGAWNCRKWM 155

SET_KMT2C

cd19208

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) ...

1063-1198

8.75e-18

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) and similar proteins; KMT2C (EC2.1.1.43; also termed lysine N-methyltransferase 2C, homologous to ALR protein (HALR) myeloid/lymphoid, or mixed-lineage leukemia protein 3 (MLL3)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me) and may be involved in leukemogenesis and developmental disorder. KMT2C is a catalytic subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. Overexpression of KMT2C is associated with estrogen receptor-positive breast cancer; KMT2C mediates the estrogen dependence of breast cancer through regulation of estrogen receptor alpha (ERalpha) enhancer function. KMT2C is frequently mutated in certain populations with diffuse-type gastric adenocarcinomas (DGA); its loss promotes epithelial-to-mesenchymal transition (EMT) and is associated with worse overall survival.

Pssm-ID: 380985 [Multi-domain] Cd Length: 154 Bit Score: 81.98 E-value: 8.75e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1063 IIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEEC--RSRIRHAQENDIthfYMLTIDKDRIIDAGPKGNYSRFMNHSC 1140
Cdd:cd19208   19 LARSRIQGLGLYAARDIEKHTMVIEYIGTIIRNEVAnrKEKLYESQNRGV---YMFRIDNDHVIDATLTGGPARYINHSC 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 86278478 1141 QPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNE-KTVCRCGAPNCSGFL 1198
Cdd:cd19208   96 APNCVAEVVTFEKGHKIIISSSRRIQKGEELCYDYKFDFEDDQhKIPCHCGAVNCRKWM 154

SET

cd08161

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, ...

1062-1176

2.75e-17

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, Enhancer-of-zeste, Trithorax (SET) domain superfamily corresponds to SET domain-containing lysine methyltransferases, which catalyze site and state-specific methylation of lysine residues in histones that are fundamental in epigenetic regulation of gene activation and silencing in eukaryotic organisms. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains has been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as N-SET and C-SET. C-SET forms an unusual and conserved knot-like structure of probable functional importance. In addition to N-SET and C-SET, an insert region (I-SET) and flanking regions of high structural variability form part of the overall structure. Some family members contain a pre-SET domain, which is found in a number of histone methyltransferases (HMTase), and a post-SET domain, which harbors a zinc-binding site.

Pssm-ID: 380914 [Multi-domain] Cd Length: 72 Bit Score: 77.29 E-value: 2.75e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1062 KIIRTAGKGWGLISLRDIKKGEFvneyvgelideeecrsrirhaqendithfymltidkdrIIDAgpkgnysRFMNHSCQ 1141
Cdd:cd08161    3 RPSTIPGAGFGLFATRDIPKGEV--------------------------------------IGLA-------RFINHSCE 37

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 86278478 1142 PNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:cd08161   38 PNCEFEEVYVGGKPRVFIVALRDIKAGEELTVDYG 72

PHD4_NSD1

cd15656

PHD finger 4 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, ...

830-869

4.42e-17

PHD finger 4 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, also termed H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, or androgen receptor coactivator 267 kDa protein, or androgen receptor-associated protein of 267 kDa, or H3-K36-HMTase H4-K20-HMTase, or Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the fourth PHD finger.

Pssm-ID: 277126 Cd Length: 40 Bit Score: 75.82 E-value: 4.42e-17

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMPDGSWFCNDC 869
Cdd:cd15656    1 WCFVCSEGGSLLCCESCPAAFHRECLNIDMPEGSWYCNDC 40

SET_SETDB2

cd10523

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) ...

1007-1198

8.76e-17

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) and similar proteins; SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.

Pssm-ID: 380921 [Multi-domain] Cd Length: 266 Bit Score: 81.80 E-value: 8.76e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1007 SEIPKCNCKPSTERPCSFESECLNRML---------------LYECHPQVCPAGERCQNQDFTKRLYPETKIIRTAGKGW 1071
Cdd:cd10523   41 IDILKCACLQLTARAFSKSESSPSKGGrgykykrlqepipsgLYECNVSCKCNRMLCQNRVVQHGLQVRLQVFKTEKKGW 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1072 GLISLRDIKKGEFVNEYVGELIdeeecrSRIRHAQENDITHFyMLTIDKDR--------------------IIDAGPKGN 1131
Cdd:cd10523  121 GVRCLDDIDKGTFVCIYAGRVL------SRARSPTEPLPPKL-ELPSENEVevvtswlilskkrklrenvcFLDASKEGN 193

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86278478 1132 YSRFMNHSCQPNCETQKWTVNGDTR----VGLFAVCDIPAGTELTFNYNLDC-LGNEKTV-CRCGAPNCSGFL 1198
Cdd:cd10523  194 VGRFLNHSCCPNLFVQNVFVDTHDKnfpwVAFFTNRVVKAGTELTWDYSYDAgTSPEQEIpCLCGVNKCQKKI 266

PHD5_NSD1

cd15659

PHD finger 5 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, ...

1234-1276

1.71e-16

PHD finger 5 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, also termed H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, or androgen receptor coactivator 267 kDa protein, or androgen receptor-associated protein of 267 kDa, or H3-K36-HMTase H4-K20-HMTase, or Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the fifth PHD finger.

Pssm-ID: 277129 Cd Length: 43 Bit Score: 74.21 E-value: 1.71e-16

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1234 ECFRCGDGGQLVLCDKKGCTKAYHLSCLDRTKRPFGRWDCPWH 1276
Cdd:cd15659    1 ECFSCGDGGQLVSCKKPGCPKVYHADCLNLTKRPAGKWECPWH 43

SET_SETDB

cd10541

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), ...

1034-1198

3.49e-16

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), SET domain bifurcated 2 (SETDB2), and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.

Pssm-ID: 380939 [Multi-domain] Cd Length: 236 Bit Score: 79.51 E-value: 3.49e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1034 LYECHPQVCPAGERCQNQDFTKRLYPETKIIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEE-----------ECRSRI 1102
Cdd:cd10541   67 VYECNKLCKCDPNMCQNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGTFVCIYAGKILTDDfadkeglemgdEYFANL 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1103 RHAQENDIthfymltidkdrIIDAGPKGNYSRFMNHSCQPNCETQKWTVNGDTR----VGLFAVCDIPAGTELTFNYNLD 1178
Cdd:cd10541  147 DHIEESCY------------IIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLrfpwVAFFASKRIKAGTELTWDYNYE 214

                        170       180
                 ....*....|....*....|..
gi 86278478 1179 C--LGNEKTVCRCGAPNCSGFL 1198
Cdd:cd10541  215 VgsVEGKELLCCCGSNECRGRL 236

SET_KMT2B

cd19207

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) ...

1063-1198

5.36e-16

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) and similar proteins; KMT2B (EC2.1.1.43; also termed lysine N-methyltransferase 2B, myeloid/lymphoid or mixed-lineage leukemia protein 4 (MLL2/MLL4), trithorax homolog 2 (TRX2), or WW domain-binding protein 7 (WBP-7)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that precedes resumption of meiosis, oocyte survival and normal zygotic genome activation.

Pssm-ID: 380984 [Multi-domain] Cd Length: 154 Bit Score: 76.60 E-value: 5.36e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1063 IIRTAGKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDIThFYMLTIDKDRIIDAGPKGNYSRFMNHSCQP 1142
Cdd:cd19207   18 VYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTDKREKFYDSKGIG-CYMFRIDDFDVVDATMHGNAARFINHSCEP 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 86278478 1143 NCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCL-GNEKTVCRCGAPNCSGFL 1198
Cdd:cd19207   97 NCYSRVIHVEGQKHIVIFALRKIYRGEELTYDYKFPIEdASNKLPCNCGAKRCRRFL 153

C5HCH

pfam17982

NSD Cys-His rich domain; This is an NSD-specific Cys-His rich region (C5HCH) domain. Family ...

1275-1320

5.40e-16

Pssm-ID: 465605 Cd Length: 50 Bit Score: 73.27 E-value: 5.40e-16

                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 86278478   1275 WHHCDVCGKNSDAFCQLCPNSFCKAHQEGALRSHPLTGQLCCQEHE 1320
Cdd:pfam17982    1 WHQCSVCGSPATSFCEFCPSSFCKDHEKGALVPSALEGRLCCSEHD 46

SET_SETD5-like

cd10529

SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine ...

1072-1179

8.86e-16

SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. KMT2E (also termed inactive lysine N-methyltransferase 2E or myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. The family also includes Saccharomyces cerevisiae SET domain-containing proteins, SET3 and SET4, and Schizosaccharomyces pombe SET3. Most of these family members contain a post-SET domain which harbors a zinc-binding site.

Pssm-ID: 380927 Cd Length: 127 Bit Score: 75.00 E-value: 8.86e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1072 GLISLRDIKKGEFVNEYVGELIDEEECRSRIRhAQENDITH--FYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETQKW 1149
Cdd:cd10529   18 GLVATEDISPGEPILEYKGEVSLRSEFKEDNG-FFKRPSPFvfFYDGFEGLPLCVDARKYGNEARFIRRSCRPNAELRHV 96

                         90       100       110
                 ....*....|....*....|....*....|.
gi 86278478 1150 TVNGDT-RVGLFAVCDIPAGTELTFNYNLDC 1179
Cdd:cd10529   97 VVSNGElRLFIFALKDIRKGTEITIPFDYDY 127

PHD1_NSD3

cd15649

PHD finger 1 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

666-708

1.20e-15

Pssm-ID: 277119 Cd Length: 44 Bit Score: 72.11 E-value: 1.20e-15

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  666 VCLVCEQTGEDIVTCAGQCYGTYHLHCIGV-ERSAEKILCTACS 708
Cdd:cd15649    1 VCQVCESFGESLVTCEGECCGLFHLECLGLtSLPDEKFICQECK 44

PHD3_NSD1

cd15653

PHD finger 3 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, ...

760-813

1.82e-15

PHD finger 3 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, also termed H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, or androgen receptor coactivator 267 kDa protein, or androgen receptor-associated protein of 267 kDa, or H3-K36-HMTase H4-K20-HMTase, or Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the third PHD finger.

Pssm-ID: 277123 Cd Length: 54 Bit Score: 71.88 E-value: 1.82e-15

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478  760 TCLSCHYSGRAACKATKGKMMRCLRCPVAYHVGDLCVAAGSEMISSSAIVCTNH 813
Cdd:cd15653    1 ICLTCHATNPSNPSASKGRLMRCVRCPVAYHANDFCLAAGSVILASNSIICPNH 54

PWWP

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...

191-297

3.13e-15

Pssm-ID: 459964 [Multi-domain] Cd Length: 92 Bit Score: 72.46 E-value: 3.13e-15

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    191 GDVIWTKVSGYPWWPCMITTDPEFNMHFRSKvnSRTGLLYHVQYFGDTpERGYVFEKCIVTFSGKHQYQSLSRSNQlpin 270
Cdd:pfam00855    1 GDLVWAKLKGYPWWPARVVDPEELPENVLKP--KKKDGEYLVRFFGDS-EFAWVKPKDLKPFDEGDEFEYLKKKKK---- 73

                           90       100
                   ....*....|....*....|....*..
gi 86278478    271 isgrkravpRKFRQKWEIGVSQAKEAL 297
Cdd:pfam00855   74 ---------KKKKKAFKKALEEAEEAL 91

PHD3_NSD3

cd15655

PHD finger 3 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

773-813

3.55e-14

PHD finger 3 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed histone-lysine N-methyltransferase NSD3, or protein whistle, or WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant homeodomain (PHD) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the third PHD finger.

Pssm-ID: 277125 Cd Length: 53 Bit Score: 67.99 E-value: 3.55e-14

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478  773 KATKGKMMRCLRCPVAYHVGDLCVAAGSEMISSSAIVCTNH 813
Cdd:cd15655   13 KASKGRMMRCLRCPVAYHTGDGCVAAGSVLVTPHIIICSNH 53

PWWP_ZCWPW2

cd20146

PWWP domain found in zinc finger CW-type PWWP domain protein 2 (ZCWPW2) and similar proteins; ...

188-306

4.56e-14

PWWP domain found in zinc finger CW-type PWWP domain protein 2 (ZCWPW2) and similar proteins; ZCWPW2 is a histone H3K4me3 reader. In addition to the PWWP domain, ZCWPW2 contains a zinc finger CW (zf-CW) domain that is a histone modification reader for the histone H3 tail with trimethylated K4. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438974 Cd Length: 113 Bit Score: 69.63 E-value: 4.56e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRsKVNSRTGLLYHVQYFGDTPERGYVFEKCIVTFSgkhqyqslsrsnql 267
Cdd:cd20146    9 LPLGSLVWAKMTGYPRWPAILTPDPICGEYVD-YDEDGEVEKYHVEFLGKPHSHAWISAKSVEPYN-------------- 73

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 86278478  268 PINISGRKRAVPRKFRQKW-EIGVSQAKEALGLLTEERLA 306
Cdd:cd20146   74 SNTKTPKCKTKKSKKRKKSyESALEEAERLLKLTCEERLE 113

PWWP

cd05162

PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, ...

879-962

2.33e-13

Pssm-ID: 438958 [Multi-domain] Cd Length: 86 Bit Score: 66.75 E-value: 2.33e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  879 DVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEiGEFPVFFFGSKDYFWTHQGRVFPYMEGDRGSKYQQTGIGKVFKNAL 958
Cdd:cd05162    2 DLVWAKLKGYPWWPARVVDPEELPEEVGKKKKK-GGVLVQFFGDNDYAWVKSKNIKPFEEGFKKEFKKKKKKSKKFKKAV 80


                 ....
gi 86278478  959 LDAE 962
Cdd:cd05162   81 EEAE 84

PWWP

cd05162

PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, ...

191-296

5.09e-13

Pssm-ID: 438958 [Multi-domain] Cd Length: 86 Bit Score: 65.98 E-value: 5.09e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  191 GDVIWTKVSGYPWWPCMITTDPEFNMHFRSKVNSRTgllYHVQYFGDTpERGYVFEKCIVTFSGKHQyqslsrsnqlpin 270
Cdd:cd05162    1 GDLVWAKLKGYPWWPARVVDPEELPEEVGKKKKKGG---VLVQFFGDN-DYAWVKSKNIKPFEEGFK------------- 63

                         90       100
                 ....*....|....*....|....*.
gi 86278478  271 isgRKRAVPRKFRQKWEIGVSQAKEA 296
Cdd:cd05162   64 ---KEFKKKKKKSKKFKKAVEEAEEA 86

PHD3_NSD

cd15566

PHD finger 3 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

760-813

2.36e-12

PHD finger 3 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the third PHD finger.

Pssm-ID: 277041 Cd Length: 48 Bit Score: 62.83 E-value: 2.36e-12

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 86278478  760 TCLSCHYSGRAAckatKGKMMRCLRCPVAYHVGdlCVAAGSEMISSSAIVCTNH 813
Cdd:cd15566    1 TCATCEASGDGS----SGKLVRCIRCPRAYHAG--CIPAGSKLLNKKLIICPKH 48

PHD2_NSD3

cd15652

PHD finger 2 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

714-759

2.65e-12

PHD finger 2 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed histone-lysine N-methyltransferase NSD3, or protein whistle, or WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, or Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1-like protein 1, or WHSC1L1), is a lysine methyltransferase encoded by gene NSD3, which is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD3 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, five plant homeodomain (PHD) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the second PHD finger.

Pssm-ID: 277122 Cd Length: 47 Bit Score: 62.58 E-value: 2.65e-12

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 86278478  714 CFTCKKSEGEVRRCCALHCGRFYHEACVRLSALTVFENRGFRCPLH 759
Cdd:cd15652    2 CFSCKVPGKDVKRCSVNACGRFYHEACVRKYTTSAFESKGFRCPQH 47

PHD2_NSD1

cd15650

PHD finger 2 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, ...

714-759

2.36e-11

PHD finger 2 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, also termed H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, or androgen receptor coactivator 267 kDa protein, or androgen receptor-associated protein of 267 kDa, or H3-K36-HMTase H4-K20-HMTase, or LysineN-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD fingers are involved in protein-protein interactions. This model corresponds to the second PHD finger.

Pssm-ID: 277120 Cd Length: 47 Bit Score: 59.90 E-value: 2.36e-11

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 86278478  714 CFTCKKSEGEVRRCCALHCGRFYHEACVRLSALTVFENRGFRCPLH 759
Cdd:cd15650    2 CFVCKKSDEDVRRCMLPLCGKFYHEECVLKYPPTVMQNRGFRCSLH 47

PHD2_NSD

cd15565

PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

714-759

6.98e-11

PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the second PHD finger.

Pssm-ID: 277040 Cd Length: 51 Bit Score: 58.59 E-value: 6.98e-11

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 86278478  714 CFTCKKS---EGEVRRCCALHCGRFYHEACV-RLSALTVFENRGFRCPLH 759
Cdd:cd15565    2 CFVCKKLgsvGGEVFKCSVASCGKFYHEECLkKWPLTTISDSKKFRCPLH 51

PWWP_AtATX3-like

cd20143

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...

879-938

1.70e-10

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like protein ATX3, ATX4, ATX5, and similar proteins; The family includes A. thaliana ATX3 (also called protein SET domain group 14, or trithorax-homolog protein 3), ATX4 (also called protein SET domain group 16, or trithorax-homolog protein 4) and ATX5 (also called protein SET domain group 29, or trithorax-homolog protein 5), which belong to the histone-lysine methyltransferase family. They show distinct phylogenetic origins from the family of ATX1 and ATX2. They are multi-domain containing protein that consists of an N-terminal PWWP domain, a canonical plant homeodomain (PHD) domain, a non-canonical extended PHD (ePHD) domain, and a C-terminal SET domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438971 [Multi-domain] Cd Length: 100 Bit Score: 59.31 E-value: 1.70e-10

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86278478  879 DVIWVKLGNYRWWPAEIRHPKNIPTNIQHlRHEIGEFPVFFFG---SKDYFWTHQGRVFPYME 938
Cdd:cd20143    4 DLVWAKVGTHPFWPARVVEPAEQAEEVRR-RCVPGSLCVYFFGpggSRDYGWVRRSMIFPFTD 65

PHD2_CHD_II

cd15532

PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD ...

831-869

1.76e-10

PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD proteins includes chromodomain-helicase-DNA-binding protein CHD3, CHD4, and CHD5, which are nuclear and ubiquitously expressed chromatin remodelling ATPases generally associated with histone deacetylases (HDACs). They are involved in DNA Double Strand Break (DSB) signaling, DSB repair and/or p53-dependent pathways such as apoptosis and senescence, as well as in the maintenance of genomic stability, and/or cancer prevention. They function as subunits of the Nucleosome Remodelling and Deacetylase (NuRD) complex, which is generally associated with gene repression, heterochromatin formation, and overall chromatin compaction. In contrast to the class I CHD enzymes (CHD1 and CHD2), class II CHD proteins lack identifiable DNA-binding domains, but possess a C-terminal coiled-coil region. Moreover, in addition to the tandem chromodomains and a helicase domain, they all harbor tandem plant homeodomain (PHD) zinc fingers involved in the recognition of methylated histone tails. This model corresponds to the second PHD finger.

Pssm-ID: 277007 [Multi-domain] Cd Length: 43 Bit Score: 57.29 E-value: 1.76e-10

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15532    2 CRVCKDGGELLCCDGCPSSYHLHCLNPPLaeiPDGDWFCPRC 43

AWS

pfam17907

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc ...

1021-1056

3.70e-10

Pssm-ID: 465559 Cd Length: 39 Bit Score: 56.28 E-value: 3.70e-10

                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 86278478   1021 PCSFESECLNRMLLYECHPQVCPAGERCQNQDFTKR 1056
Cdd:pfam17907    4 PCGCGSDCINRMLFVECTPKTCPCGESCQNQRFQRK 39

PWWP

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

188-237

7.43e-10

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues

Pssm-ID: 214603 [Multi-domain] Cd Length: 63 Bit Score: 56.20 E-value: 7.43e-10

                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 86278478     188 FSVGDVIWTKVSGYPWWPCMITT---DPEFNMHFRSKVNsrtglLYHVQYFGD 237
Cdd:smart00293    1 FKPGDLVWAKMKGFPWWPALVISpkmTPDNIMKRKSDEN-----LYPVLFFGD 48

SET_SMYD

cd20071

SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing ...

1068-1175

1.32e-09

SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; The family includes SET and MYND domain-containing proteins, SMYD1-SYMD5. SMYD1 (EC 2.1.1.43; also termed BOP) is a heart and muscle specific SET-MYND domain containing protein, which functions as a histone methyltransferase and regulates downstream gene transcription. It methylates histone H3 at 'Lys-4' (H3K4me), seems able to perform both mono-, di-, and trimethylation. SMYD2 (also termed HSKM-B, or lysine N-methyltransferase 3C (KMT3C)) functions as a histone methyltransferase that methylates both histones and non-histone proteins, including p53/TP53 and RB1. It specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). SMYD3 (also termed zinc finger MYND domain-containing protein 1) functions as a histone methyltransferase that specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. It also methylates 'Lys-5' of histone H4. SMYD3 plays an important role in transcriptional activation as a member of an RNA polymerase complex. SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. SMYD5 (also termed protein NN8-4AG, or retinoic acid-induced protein 15) functions as histone lysine methyltransferase that mediates H4K20me3 at heterochromatin regions.

Pssm-ID: 380997 [Multi-domain] Cd Length: 122 Bit Score: 57.39 E-value: 1.32e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1068 GKGWGLISLRDIKKGEfvneyvgELIDEEEcrsrIRHAQENDITHFymltiDKDRIIDAG--PKGNysrFMNHSCQPNCE 1145
Cdd:cd20071    8 SKGRGLVATRDIEPGE-------LILVEKP----LVSVPSNSFSLT-----DGLNEIGVGlfPLAS---LLNHSCDPNAV 68

                         90       100       110
                 ....*....|....*....|....*....|
gi 86278478 1146 tqkWTVNGDTRVGLFAVCDIPAGTELTFNY 1175
Cdd:cd20071   69 ---VVFDGNGTLRVRALRDIKAGEELTISY 95

PHD1_Rco1

cd15535

PHD finger 1 found in Saccharomyces cerevisiae transcriptional regulatory protein Rco1 and ...

831-869

1.69e-09

PHD finger 1 found in Saccharomyces cerevisiae transcriptional regulatory protein Rco1 and similar proteins; Rco1 is a component of the Rpd3S histone deacetylase complex that plays an important role at actively transcribed genes. Rco1 contains two plant homeodomain (PHD) fingers, which are required for the methylation of histone H3 lysine 36 (H3K36) nucleosome recognition by Rpd3S. This model corresponds to the first PHD finger.

Pssm-ID: 277010 [Multi-domain] Cd Length: 45 Bit Score: 54.35 E-value: 1.69e-09

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLNI-----AMPDGSWFCNDC 869
Cdd:cd15535    2 CSACGGYGSFLCCDGCPRSFHFSCLDPpleedNLPDDEWFCNEC 45

PHD1_AIRE

cd15539

PHD finger 1 found in autoimmune regulator (AIRE); AIRE, also termed autoimmune ...

831-869

1.75e-09

PHD finger 1 found in autoimmune regulator (AIRE); AIRE, also termed autoimmune polyendocrinopathy candidiasis ectodermal dystrophy (APECED) protein, functions as a regulator of gene transcription in the thymus. It is essential for prevention of autoimmunity. AIRE plays a critical role in the induction of central tolerance. It promotes self-tolerance through tissue-specific antigen (TSA) expression. It also acts as an active regulator of chondrocyte differentiation. AIRE contains a homogeneously-staining region (HSR) or caspase-recruitment domain (CARD), a nuclear localization signal (NLS), a SAND (for Sp100, AIRE, nuclear phosphoprotein 41/75 or NucP41/75, and deformed epidermal auto regulatory factor 1 or Deaf1) domain, two plant homeodomain (PHD) fingers, and four LXXLL (where L stands for leucine) motifs. This model corresponds to the first PHD finger that recognizes the unmethylated tail of histone H3 and targets AIRE-dependent genes.

Pssm-ID: 277014 [Multi-domain] Cd Length: 43 Bit Score: 54.38 E-value: 1.75e-09

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLNI---AMPDGSWFCNDC 869
Cdd:cd15539    2 CAVCGDGGELLCCDGCPRAFHLACLVPpltLIPSGTWRCSSC 43

SET_Suv4-20-like

cd10524

SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of ...

1069-1189

2.78e-09

SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of variegation 4-20 (Suv4-20) and similar proteins; Suv4-20 (also termed Su(var)4-20) is a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-20' of histone H4. It acts as a dominant suppressor of position-effect variegation. The family also includes Suv4-20 homologs, lysine N-methyltransferase 5B (KMT5B) and lysine N-methyltransferase 5C (KMT5C). Both KMT5B (also termed lysine-specific methyltransferase 5B, or suppressor of variegation 4-20 homolog 1, or Su(var)4-20 homolog 1, or Suv4-20h1) and KMT5C (also termed lysine-specific methyltransferase 5C, or suppressor of variegation 4-20 homolog 2, or Su(var)4-20 homolog 2, or Suv4-20h2) are histone methyltransferases that specifically trimethylate 'Lys-20' of histone H4 (H4K20me3). They play central roles in the establishment of constitutive heterochromatin in pericentric heterochromatin regions.

Pssm-ID: 380922 [Multi-domain] Cd Length: 141 Bit Score: 56.91 E-value: 2.78e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1069 KGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQENDITHFYMLTIDKDRIIDaGPkgnySRFMNHSCQPNCetqK 1148
Cdd:cd10524   18 YGAKIIATKPIKKGEKIHELCGCIAELSEEEEALLRPGGNDFSVMYSSRKKCSQLWL-GP----AAFINHDCRPNC---K 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 86278478 1149 WTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRC 1189
Cdd:cd10524   90 FVPTGKSTACVKVLRDIEPGEEITVYYGDNYFGENNEECEC 130

AWS

smart00570

associated with SET domains; subdomain of PRESET

1008-1058

7.75e-09

associated with SET domains; subdomain of PRESET

Pssm-ID: 197795 Cd Length: 50 Bit Score: 52.79 E-value: 7.75e-09

                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 86278478    1008 EIPKCNCKPSTERPCSFESECLNRMLLYEChPQVCPAGERCQNQDFTKRLY 1058
Cdd:smart00570    1 DIMTCECKPTDDDETACGSDCLNRMLFIEC-SSSCPCGSYCSNQRFQKRQY 50

SET_SpSET3-like

cd19183

SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET ...

1060-1178

8.02e-09

SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET domain-containing protein 3 (SETD3) and similar proteins; Schizosaccharomyces pombe SETD3 functions as a transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. It is required for both, gene activation and repression.

Pssm-ID: 380960 Cd Length: 173 Bit Score: 56.64 E-value: 8.02e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1060 ETKIIRTAGKGW-GLISLRDIKKGEFVNEYVGE-------LIDEEECRSRIRHAQENDITHfYMLTIdkdrIIDAGPKGN 1131
Cdd:cd19183    2 EISSIGLANASRfGLFADRPIPAGDPIQELLGEiglqseyIADPENQYQILGAPKPHVFFH-PQSPL----YIDTRRSGS 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 86278478 1132 YSRFMNHSCQPNCE--TQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLD 1178
Cdd:cd19183   77 VARFIRRSCRPNAElvTVASDSGSVLKFVLYASRDISPGEEITIGWDWD 125

PHD1_PHF12

cd15533

PHD finger 1 found in PHD finger protein 12 (PHF12); PHF12, also termed PHD factor 1 (Pf1), is ...

831-869

8.11e-09

PHD finger 1 found in PHD finger protein 12 (PHF12); PHF12, also termed PHD factor 1 (Pf1), is a plant homeodomain (PHD) zinc finger-containing protein that bridges the transducin-like enhancer of split (TLE) corepressor to the mSin3A-histone deacetylase (HDAC)-complex, and further represses transcription at targeted genes. PHF12 also interacts with MRG15 (mortality factor-related genes on chromosome 15), a member of the mortality factor (MORF) family of proteins implicated in regulating cellular senescence. PHF12 contains two plant-homeodomain (PHD) zinc fingers followed by a polybasic region. The PHD fingers function downstream of phosphoinositide signaling triggered by the interaction between polybasic regions and phosphoinositides. This model corresponds to the first PHD finger.

Pssm-ID: 277008 [Multi-domain] Cd Length: 45 Bit Score: 52.74 E-value: 8.11e-09

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLN-----IAMPDGSWFCNDC 869
Cdd:cd15533    2 CDSCGEGGDLLCCDRCPASFHLQCCNppldeEDLPPGEWLCHRC 45

PHD5_NSD

cd15568

PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

830-866

5.38e-08

Pssm-ID: 277043 [Multi-domain] Cd Length: 43 Bit Score: 50.02 E-value: 5.38e-08

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 86278478  830 WCFICSKGGRLLCC--ESCPAAFHPDCLNIAM-PDGSWFC 866
Cdd:cd15568    1 ECFRCGDGGDLVLCdfKGCPKVYHLSCLGLEKpPGGKWIC 40

PHD

PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar ...

830-871

8.80e-08

Pssm-ID: 425785 [Multi-domain] Cd Length: 51 Bit Score: 49.80 E-value: 8.80e-08

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 86278478    830 WCFICSK---GGRLLCCESCPAAFHPDCLNIAM-----PDGSWFCNDCRS 871
Cdd:pfam00628    1 YCAVCGKsddGGELVQCDGCDDWFHLACLGPPLdpaeiPSGEWLCPECKP 50

PWWP_GLYR1

cd05836

PWWP domain found in glyoxylate reductase 1 (GLYR1) and similar proteins; GLYR1, also called ...

875-962

2.09e-07

PWWP domain found in glyoxylate reductase 1 (GLYR1) and similar proteins; GLYR1, also called 3-hydroxyisobutyrate dehydrogenase-like protein, cytokine-like nuclear factor N-PAC, nuclear protein NP60, or nuclear protein of 60 kDa, is a putative oxidoreductase that is recruited on chromatin and promotes KDM1B demethylase activity. It recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). GLYR1 enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In addition to the PWWP domain, GLYR1 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438961 [Multi-domain] Cd Length: 86 Bit Score: 49.91 E-value: 2.09e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  875 PKYRDVIWVKLGNYRWWPAEIRHPkniPTNIQHLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEGDrgSKYQQTGIGKVF 954
Cdd:cd05836    1 FKIGDLVWAKMKGFPPWPGKIVNP---PPDLKKPPRKKKMHCVYFFGSENYAWIEDENIKPYEEFK--EEMLKSKKSAGF 75


                 ....*...
gi 86278478  955 KNALLDAE 962
Cdd:cd05836   76 KDAVEAIE 83

PHD

PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in ...

830-869

2.55e-07

Pssm-ID: 214584 [Multi-domain] Cd Length: 47 Bit Score: 48.36 E-value: 2.55e-07

                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 86278478     830 WCFICSK---GGRLLCCESCPAAFHPDCLNIAM----PDGSWFCNDC 869
Cdd:smart00249    1 YCSVCGKpddGGELLQCDGCDRWYHQTCLGPPLleeePDGKWYCPKC 47

PHD_TIF1gamma

cd15624

PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma); TIF1gamma, also ...

830-870

3.83e-07

PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma); TIF1gamma, also termed tripartite motif-containing 33 (trim33), or ectodermin, or RFG7, or PTC7, is an E3-ubiquitin ligase that functions as a regulator of transforming growth factor beta (TGFbeta) signaling; it inhibits the Smad4-mediated TGFbeta response by interaction with Smad2/3 or ubiquitylation of Smad4. Moreover, TIF1gamma is an important regulator of transcription during hematopoiesis, as well as a key factor of tumorigenesis. Like other TIF1 family members, TIF1gamma also contains an intrinsic transcriptional silencing function. It can control erythroid cell fate by regulating transcription elongation. It can bind to the anaphase-promoting complex/cyclosome (APC/C) and promotes mitosis. TIF1gamma contains an N-terminal RBCC (RING finger, B-box zinc-fingers, coiled-coil), a plant homeodomain (PHD) finger, followed by a bromodomain in the C-terminal region.

Pssm-ID: 277094 Cd Length: 46 Bit Score: 47.73 E-value: 3.83e-07

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDC---LNIAMPDGSWFCNDCR 870
Cdd:cd15624    1 WCAVCQNGGDLLCCEKCPKVFHLTChvpTLLSFPSGDWICTFCR 44

PWWP_PWWP2

cd20140

PWWP domain found in the PWWP domain-containing protein 2 (PWWP2) family; The PWWP2 family ...

185-210

7.60e-07

PWWP domain found in the PWWP domain-containing protein 2 (PWWP2) family; The PWWP2 family includes PWWP2A and its paralog PWWP2B. PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438968 Cd Length: 92 Bit Score: 48.41 E-value: 7.60e-07

                         10        20
                 ....*....|....*....|....*.
gi 86278478  185 NVHFSVGDVIWTKVSGYPWWPCMITT 210
Cdd:cd20140    1 GRTLRVGDIVWGKIHGFPWWPGRILS 26

PHD1_BPTF

cd15559

PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF); BPTF, ...

831-869

9.97e-07

PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF); BPTF, also termed nucleosome-remodeling factor subunit BPTF, or fetal Alz-50 clone 1 protein (FAC1), or fetal Alzheimer antigen, functions as a transcriptional regulator that exhibits altered expression and subcellular localization during neuronal development and neurodegenerative diseases such as Alzheimer's disease. It interacts with the human orthologue of the Kelch-like Ech-associated protein (Keap1). Its function and subcellular localization can be regulated by Keap1. Moreover, BPTF is a novel DNA-binding protein that recognizes the DNA sequence CACAACAC and represses transcription through this site in a phosphorylation-dependent manner. Furthermore, BPTF interacts with the Myc-associated zinc finger protein (ZF87/MAZ) and alters its transcriptional activity, which has been implicated in gene regulation in neurodegeneration. Some family members contain two or three plant homeodomain (PHD) fingers, which may be involved in complex formation with histone H3 trimethylated at K4 (H3K4me3). This family corresponds to the first PHD finger.

Pssm-ID: 277034 [Multi-domain] Cd Length: 43 Bit Score: 46.64 E-value: 9.97e-07

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15559    2 CRVCHKLGDLLCCETCSAVYHLECVDPPLeevPEEDWQCEVC 43

PHD1_AIRE

cd15539

PHD finger 1 found in autoimmune regulator (AIRE); AIRE, also termed autoimmune ...

1234-1273

1.20e-06

Pssm-ID: 277014 [Multi-domain] Cd Length: 43 Bit Score: 46.29 E-value: 1.20e-06

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478 1234 ECFRCGDGGQLVLCDkkGCTKAYHLSCL--DRTKRPFGRWDC 1273
Cdd:cd15539    1 ECAVCGDGGELLCCD--GCPRAFHLACLvpPLTLIPSGTWRC 40

PHD_TIF1alpha

cd15622

PHD finger found in transcription intermediary factor 1-alpha (TIF1-alpha); TIF1-alpha, also ...

830-869

1.76e-06

PHD finger found in transcription intermediary factor 1-alpha (TIF1-alpha); TIF1-alpha, also termed tripartite motif-containing protein 24 (TRIM24), or E3 ubiquitin-protein ligase TRIM24, or RING finger protein 82, belongs to the TRIM/RBCC protein family. It interacts specifically and in a ligand-dependent manner with the ligand binding domain (LBD) of several nuclear receptors (NRs), including retinoid X (RXR), retinoic acid (RAR), vitamin D3 (VDR), estrogen (ER), and progesterone (PR) receptors. It also associates with heterochromatin-associated factors HP1alpha, MOD1 (HP1beta) and MOD2 (HP1gamma), as well as vertebrate Kruppel-type (C2H2) zinc finger proteins that contain transcriptional silencing domain KRAB. TIF1-alpha is a ligand-dependent co-repressor of retinoic acid receptor (RAR) that interacts with multiple nuclear receptors in vitro via an LXXLL motif, and further acts as a gatekeeper of liver carcinogenesis. It also functions as an E3-ubiquitin ligase targeting p53 and is broadly associated with chromatin silencing. Moreover, it is a chromatin regulator that recognizes specific, combinatorial histone modifications through its C-terminal plant homeodomain (PHD)-Bromodomain (Bromo) region. In addition, it interacts with chromatin and estrogen receptor to activate estrogen-dependent genes associated with cellular proliferation and tumor development. TIF1-alpha contains an N-terminal RBCC (RING finger, B-box zinc-fingers, coiled-coil), a plant homeodomain (PHD) finger, followed by a bromodomain in the C-terminal region.

Pssm-ID: 277092 Cd Length: 43 Bit Score: 45.83 E-value: 1.76e-06

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDC---LNIAMPDGSWFCNDC 869
Cdd:cd15622    1 WCAVCQNGGELLCCEKCPKVFHLSChvpTLMNFPSGEWICTFC 43

PHD_TIF1delta

cd15625

PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta); TIF1delta, also ...

827-871

1.94e-06

PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta); TIF1delta, also termed tripartite motif-containing protein 66 (TRIM66), is a novel heterochromatin protein 1 (HP1)-interacting member of the transcriptional intermediary factor1 (TIF1) family expressed by elongating spermatids. Like other TIF1 proteins, TIF1delta displays a potent trichostatin A (TSA)-sensitive repression function; TSA is a specific inhibitor of histone deacetylases. Moreover, TIF1delta plays an important role in heterochromatin-mediated gene silencing during postmeiotic phases of spermatogenesis. It functions as a negative regulator of postmeiotic genes acting through HP1 isotype gamma (HP1gamma) complex formation and centromere association. TIF1delta contains an N-terminal RBCC (RING finger, B-box zinc-fingers, coiled-coil), a plant homeodomain (PHD) finger, followed by a bromodomain in the C-terminal region.

Pssm-ID: 277095 [Multi-domain] Cd Length: 49 Bit Score: 46.11 E-value: 1.94e-06

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 86278478  827 NVSWCFICSKGGRLLCCESCPAAFHPDC---LNIAMPDGSWFCNDCRS 871
Cdd:cd15625    1 NEDFCAVCLNGGELLCCDRCPKVFHLSChvpALLSFPVGEWVCTLCRN 48

PWWP_ScIOC4-like

cd05840

PWWP domain found in Saccharomyces cerevisiae ISWI one complex protein 4 (ScIOC4) and similar ...

191-237

2.04e-06

PWWP domain found in Saccharomyces cerevisiae ISWI one complex protein 4 (ScIOC4) and similar proteins; ScIOC4 functions as a component of the ISW1B complex, which acts in remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. The ISW1B complex acts within coding regions to control the amount of RNA polymerase II released into productive elongation and to coordinate elongation with termination and pre-mRNA processing. The family also includes Schizosaccharomyces pombe PWWP domain-containing proteins 1 and 2 (SpPDP1 and SpPDP2). SpPDP1 associates with Set9 to regulate its chromatin localization and methyltransferase activity towards H4K20. Members of this family contain a PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438965 Cd Length: 94 Bit Score: 47.30 E-value: 2.04e-06

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 86278478  191 GDVIWTKVSGYPWWPCMITTDPEFNMHFRSK---VNSRTGLLYHVQYFGD 237
Cdd:cd05840    1 GDLVLAKVKGYPPWPAMVLPEELLPKNVLKAkkrKPKSKKTVYPVQFFPD 50

SET_SpSet7-like

cd10540

SET domain found in Schizossacharomyces pombe Set7 and similar proteins; Schizosaccharomyces ...

1063-1176

2.12e-06

SET domain found in Schizossacharomyces pombe Set7 and similar proteins; Schizosaccharomyces pombe Set7 is a novel histone-lysine N-methyltransferase. The family also includes a viral histone H3 lysine 27 methyltransferase from Paramecium bursaria Chlorella virus 1 (PBCV-1).

Pssm-ID: 380938 Cd Length: 112 Bit Score: 47.63 E-value: 2.12e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1063 IIRTAGKGWGLISLRDIKKGEFVNE-YVGELIDEEEcrsriRHAQENDITHFYMLTIDKDRIIDAGpkgnYSRFMNHSCQ 1141
Cdd:cd10540    4 VKPSTLKGRGVFATRPIKKGEVIEEaPVIVLPKEEY-----QHLCKTVLDHYVFSWGDGCLALALG----YGSMFNHSYT 74

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 86278478 1142 PNCEtqKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:cd10540   75 PNAE--YEIDFENQTIVFYALRDIEAGEELTINYG 107

PWWP_HRP

cd05834

PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The ...

188-267

2.23e-06

PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The HRP family includes hepatoma-derived growth factor (HDGF), and HDGF-related proteins (HRPs). HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It is a prognostic factor in several types of cancer. HDGFL1 is also called PWWP domain-containing protein 1 (PWWP1). Its biological function remains unclear. HDGFL2, also called HDGF-related protein 2 (HRP-2), or hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. HDGFL3, also called HDGF-related protein 3 (HRP-3), enhances DNA synthesis and may play a role in cell proliferation. The family also includes PC4 and SFRS1-interacting protein (PSIP) and similar proteins. PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. Members of the HRP family contains a PWWP domain, which is necessary for DNA binding.

Pssm-ID: 438959 [Multi-domain] Cd Length: 82 Bit Score: 46.78 E-value: 2.23e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEFNMHFRSKvnsrtgllYHVQYFGdTPERGYVFEKCIVTFSG-KHQYQSLSRSNQ 266
Cdd:cd05834    1 FKPGDLVFAKVKGYPPWPARIDEIPEGAKIPKNK--------YPVFFYG-THETAFLKPKDLFPYEEnKEKYGKPRKRKG 71


                 .
gi 86278478  267 L 267
Cdd:cd05834   72 F 72

PWWP_AtATX1-like

cd20142

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...

189-253

4.21e-06

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like proteins ATX1, ATX2, and similar proteins; This family includes A. thaliana ATX1 and ATX2, which are sister paralogs originating from a segmental chromosomal duplication. They are plant counterparts of the Drosophila melanogaster trithorax (TRX) and mammalian mixed-lineage leukemia (MLL1) proteins. ATX1, also called protein SET domain group 27, or trithorax-homolog protein 1 (TRX-homolog protein 1), is a methyltransferase that trimethylates histone H3 at lysine 4 (H3K4me3). It also acts as a histone modifier and as a positive effector of gene expression. ATX1 regulates transcription from diverse classes of genes implicated in biotic and abiotic stress responses. It is involved in dehydration stress signaling in both abscisic acid (ABA)-dependent and ABA-independent pathways. ATX2, also called protein SET domain group 30, or trithorax-homolog protein 2 (TRX-homolog protein 2), is involved in dimethylating histone H3 at lysine 4 (H3K4me2). Both ATX1 and ATX2 are multi-domain containing proteins that consist of an N-terminal PWWP domain, FYRN- and FYRC (DAST, domain associated with SET in trithorax) domains, a canonical plant homeodomain (PHD) domain, a non-canonical extended PHD (ePHD) domain, and a C-terminal SET domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438970 [Multi-domain] Cd Length: 97 Bit Score: 46.58 E-value: 4.21e-06

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 86278478  189 SVGDVIWTKVSGYPWWPCMITTDPEF---NMHFRSKVNSRTGLlyhVQYFGdTPERGYVFEKCIVTFS 253
Cdd:cd20142    1 SPGDVVWAKVKGYPMWPALVIDEEHAercGLEANRPGKKGTVP---VQFFG-TYEVARLNPKKVVGFS 64

PHD_TIF1_like

cd15541

PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar ...

830-869

6.76e-06

PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins; The TIF1 family of transcriptional cofactors includes TIF1alpha (TRIM24), TIF1beta (TRIM28), TIF1gamma (TRIM33), and TIF1delta (TRIM66), which are characterized by an N-terminal RING-finger B-box coiled-coil (RBCC/TRIM) motif and plant homeodomain (PHD) finger followed by a bromodomain in the C-terminal region. TIF1 proteins couple chromatin modifications to transcriptional regulation, signaling, and tumor suppression. They exert a deacetylase-dependent silencing effect when tethered to a promoter region. TIF1alpha, TIF1beta, and TIF1delta can homodimerize and contain a PXVXL motif necessary and sufficient for heterochromatin protein 1(HP1) binding. TIF1alpha and TIF1beta bind nuclear receptors and Kruppel-associated boxes (KRAB) specifically and respectively. In contrast, TIF1delta appears to lack nuclear receptor- and KRAB-binding activity. Moreover, TIF1delta is specifically involved in heterochromatin-mediated gene silencing during postmeiotic phases of spermatogenesis. TIF1gamma is structurally closely related to TIF1alpha and TIF1beta, but has very little functional features in common with them. It does not interact with the KRAB silencing domain of KOX1 or the heterochromatinic proteins HP1alpha, beta, and gamma. It cannot bind to nuclear receptors (NRs). This family also includes Sp100/Sp140 family proteins, the nuclear body SP100 and SP140. Sp110 is a leukocyte-specific component of the nuclear body. It may function as a nuclear hormone receptor transcriptional coactivator that may play a role in inducing differentiation of myeloid cells. It is also involved in resisting intracellular pathogens and functions as an important drug target for preventing intracellular pathogen diseases, such as tuberculosis, hepatic veno-occlusive disease, and intracellular cancers. SP140 is an interferon inducible nuclear leukocyte-specific protein involved in primary biliary cirrhosis and a risk factor in chronic lymphocytic leukemia. It is also implicated in innate immune response to human immunodeficiency virus type 1 (HIV-1) by binding to the virus viral infectivity factor (Vif) protein. Both Sp110 and Sp140 contain a SAND domain, a plant homeodomain (PHD) finger, and a bromodomain (BRD).

Pssm-ID: 277016 [Multi-domain] Cd Length: 43 Bit Score: 44.26 E-value: 6.76e-06

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDC---LNIAMPDGSWFCNDC 869
Cdd:cd15541    1 WCAVCQNGGELLCCDKCPRVFHLDChipPIPEFPSGEWSCSLC 43

PHD_SF

cd15489

PHD finger superfamily; The PHD finger superfamily includes a canonical plant homeodomain (PHD) ...

831-869

1.09e-05

Pssm-ID: 276966 [Multi-domain] Cd Length: 48 Bit Score: 43.84 E-value: 1.09e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 86278478  831 CFICSKGG----RLLCCESCPAAFHPDCLNIA----MPDGSWFCNDC 869
Cdd:cd15489    2 CIVCGKGGdlggELLQCDGCGKWFHADCLGPPlssfVPNGKWICPVC 48

PHD1_Lid2p_like

cd15519

PHD finger 1 found in Schizosaccharomyces pombe Lid2 complex component Lid2p and similar ...

831-869

1.18e-05

PHD finger 1 found in Schizosaccharomyces pombe Lid2 complex component Lid2p and similar proteins; Lid2p is a trimethyl H3K4 (H3K4me3) demethylase responsible for H3K4 hypomethylation in heterochromatin. It interacts with the histone lysine-9 methyltransferase, Clr4, through the Dos1/Clr8-Rik1 complex, and mediates H3K9 methylation and small RNA production. It also acts cooperatively with the histone modification enzymes Set1 and Lsd1 and plays an essential role in cross-talk between H3K4 and H3K9 methylation in euchromatin. Lid2p contains a JmjC domain, three PHD fingers and a JmjN domain. This model corresponds to the first PHD finger.

Pssm-ID: 276994 [Multi-domain] Cd Length: 46 Bit Score: 43.61 E-value: 1.18e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 86278478  831 CFICSKG---GRLLCCESCPAAFHPDCLN---IAMPDGSWFCNDC 869
Cdd:cd15519    2 CEVCGLDdneGEVLLCDGCDAEYHTSCLDpplGEIPPGTWFCPSC 46

SET_ATXR5_6-like

cd10539

SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The ...

1077-1176

1.34e-05

SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The family includes Arabidopsis thaliana ATXR5 and ATXR6. Both ATXR5 (also termed protein SET DOMAIN GROUP 15, or TRX-related protein 5) and ATXR6 (also termed protein SET DOMAIN GROUP 34, or TRX-related protein 6) function as histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). They are required for chromatin structure and gene silencing.

Pssm-ID: 380937 Cd Length: 138 Bit Score: 46.25 E-value: 1.34e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1077 RDIKKGEFVNEYVGElIDEEECRSRirhaQENDITHFYMLTIDKDRIIDAGP--KGNYSRFM----NHSCQ----PNCET 1146
Cdd:cd10539   22 GFIKDLTIIAEYTGD-VDYIRNREF----DDNDSIMTLLLAGDPSKSLVICPdkRGNIARFIsginNHTKDgkkkQNCKC 96

                         90       100       110
                 ....*....|....*....|....*....|
gi 86278478 1147 QKWTVNGDTRVGLFAVCDIPAGTELTFNYN 1176
Cdd:cd10539   97 VRYSINGEARVLLVATRDIAKGERLYYDYN 126

PHD1_NSD1_2

cd15648

PHD finger 1 found in nuclear receptor-binding SET domain-containing protein NSD1 and NSD2; ...

666-708

1.37e-05

PHD finger 1 found in nuclear receptor-binding SET domain-containing protein NSD1 and NSD2; NSD1, also termed H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, or androgen receptor coactivator 267 kDa protein, or androgen receptor-associated protein of 267 kDa, or H3-K36-HMTase H4-K20-HMTase, or Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). Both NSD1 and NSD2 contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). In addition, NSD2 harbors a high mobility group (HMG) box. The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the first PHD finger.

Pssm-ID: 277118 Cd Length: 43 Bit Score: 43.23 E-value: 1.37e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  666 VCLVCEQTGEdIVTCAGQCYGTYHLHCIGV-ERSAEKILCTACS 708
Cdd:cd15648    1 VCQVCEKPGE-LLLCEGQCCGAFHLDCIGLsEMPSGKFICDECI 43

PHD2_CHD_II

cd15532

PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD ...

1235-1274

1.46e-05

Pssm-ID: 277007 [Multi-domain] Cd Length: 43 Bit Score: 43.42 E-value: 1.46e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478 1235 CFRCGDGGQLVLCDkkGCTKAYHLSCLD-RTKR-PFGRWDCP 1274
Cdd:cd15532    2 CRVCKDGGELLCCD--GCPSSYHLHCLNpPLAEiPDGDWFCP 41

SET_SETD5

cd19181

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and ...

1056-1194

1.96e-05

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. SETD5 loss-of-function mutations are a likely cause of a familial syndromic intellectual disability with variable phenotypic expression.

Pssm-ID: 380958 Cd Length: 150 Bit Score: 46.15 E-value: 1.96e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1056 RLYPETKIIRTAgkgwglislRDIKKGEFVNEYVGELIDEEECRSRIRHAQEN-DITHFYMLTIDKDRIIDAGPKGNYSR 1134
Cdd:cd19181   13 RVQKHRKILRAA---------RDLALDTLIIEYRGKVMLRQQFEVNGHFFKRPyPFVLFYSKFNGVEMCVDARTFGNDAR 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 86278478 1135 FMNHSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTF---------NYNLDClgnektVCRCGAPNC 1194
Cdd:cd19181   84 FIRRSCTPNAEVRHMIADGMIHLCIYAVAAIAKDAEVTIafdyeysncNYKVDC------ACHKGNRNC 146

PHD1_CHD_II

cd15531

PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD ...

1235-1278

1.97e-05

PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD proteins includes chromodomain-helicase-DNA-binding protein CHD3, CHD4, and CHD5, which are nuclear and ubiquitously expressed chromatin remodelling ATPases generally associated with histone deacetylases (HDACs). They are involved in DNA Double Strand Break (DSB) signaling, DSB repair and/or p53-dependent pathways such as apoptosis and senescence, as well as in the maintenance of genomic stability, and/or cancer prevention. They function as subunits of the Nucleosome Remodelling and Deacetylase (NuRD) complex, which is generally associated with gene repression, heterochromatin formation, and overall chromatin compaction. In contrast to the class I CHD enzymes (CHD1 and CHD2), class II CHD proteins lack identifiable DNA-binding domains, but possess a C-terminal coiled-coil region. Moreover, in addition to the tandem chromodomains and a helicase domain, they all harbor tandem plant homeodomain (PHD) zinc fingers involved in the recognition of methylated histone tails. This model corresponds to the first PHD finger.

Pssm-ID: 277006 [Multi-domain] Cd Length: 43 Bit Score: 42.97 E-value: 1.97e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 86278478 1235 CFRCGDGGQLVLCDKkgCTKAYHLSCLD--RTKRPFGRWDCPwhHC 1278
Cdd:cd15531    2 CEVCQQGGEIILCDT--CPRAYHLVCLDpeLEKAPEGKWSCP--HC 43

PWWP_AtATX1-like

cd20142

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...

878-967

2.39e-05

Pssm-ID: 438970 [Multi-domain] Cd Length: 97 Bit Score: 44.27 E-value: 2.39e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  878 RDVIWVKLGNYRWWPA-----EIRHPKNIPTNiqhLRHEIGEFPVFFFGSKDYFWTHQGRVFPYMEG---DRGSKYQQTg 949
Cdd:cd20142    3 GDVVWAKVKGYPMWPAlvideEHAERCGLEAN---RPGKKGTVPVQFFGTYEVARLNPKKVVGFSKGldlKYHSKCKAP- 78

                         90
                 ....*....|....*...
gi 86278478  950 igkVFKNALLDAETRFKE 967
Cdd:cd20142   79 ---VFRQALEEAERYLKE 93

PHD_PHF21A

cd15523

PHD finger found in PHD finger protein 21A (PHF21A); PHF21A (also termed BHC80a or BRAF35-HDAC ...

831-869

2.50e-05

PHD finger found in PHD finger protein 21A (PHF21A); PHF21A (also termed BHC80a or BRAF35-HDAC complex protein BHC80) along with HDAC1/2, CtBP1, CoREST, and BRAF35, is associated with LSD1, a lysine (K)-specific histone demethylase. It inhibits LSD1-mediated histone demethylation in vitro. PHF21A is predominantly present in the central nervous system and spermatogenic cells and is one of the six components of BRAF-HDAC complex (BHC) involved in REST-dependent transcriptional repression of neuron-specific genes in non-neuronal cells. It acts as a scaffold protein in BHC in neuronal as well as non-neuronal cells and also plays a role in spermatogenesis. PHF21A contains a C-terminal plant homeodomain (PHD) finger that is responsible for the binding directly to each of five other components of BHC, and of organizing BHC mediating transcriptional repression.

Pssm-ID: 276998 [Multi-domain] Cd Length: 43 Bit Score: 42.77 E-value: 2.50e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLN---IAMPDGSWFCNDC 869
Cdd:cd15523    2 CSVCRKSGELLMCDTCSLVYHLDCLDpplKTIPKGMWICPKC 43

PHD_PRKCBP1

cd15538

PHD finger found in protein kinase C-binding protein 1 (PRKCBP1); PRKCBP1, also termed ...

831-869

2.66e-05

PHD finger found in protein kinase C-binding protein 1 (PRKCBP1); PRKCBP1, also termed cutaneous T-cell lymphoma-associated antigen se14-3 (CTCL-associated antigen se14-3), or Rack7, or zinc finger MYND domain-containing protein 8 (ZMYND8), is a novel receptor for activated C-kinase (RACK)-like protein that may play an important role in the activation and regulation of PKC-beta I, and the PKC signaling cascade. It also has been identified as a formin homology-2-domain containing protein 1 (FHOD1)-binding protein that may be involved in FHOD1-regulated actin polymerization and transcription. Moreover, PRKCBP1 may function as a REST co-repressor 2 (RCOR2) interacting factor; the RCOR2/ZMYND8 complex which might be involved in the regulation of neural differentiation. PRKCBP1 contains a plant homeodomain (PHD) finger, a bromodomain, and a proline-tryptophan-tryptophan-proline (PWWP) domain.

Pssm-ID: 277013 Cd Length: 41 Bit Score: 42.70 E-value: 2.66e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLNI-AMPDGSWFCNDC 869
Cdd:cd15538    2 CWRCHKEGQVLCCSLCPRVYHKKCLKLtSEPDEDWVCPEC 41

PHD1_CHD_II

cd15531

PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins; Class II CHD ...

830-869

2.69e-05

Pssm-ID: 277006 [Multi-domain] Cd Length: 43 Bit Score: 42.59 E-value: 2.69e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15531    1 YCEVCQQGGEIILCDTCPRAYHLVCLDPELekaPEGKWSCPHC 43

SET_KMT5C

cd19185

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5C (KMT5C) ...

1070-1189

3.44e-05

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5C (KMT5C) and similar proteins; KMT5C (also termed lysine N-methyltransferase 5C, lysine-specific methyltransferase 5C, suppressor of variegation 4-20 homolog 2, Su(var)4-20 homolog 2 or Suv4-20h2) is a histone methyltransferase that specifically trimethylates 'Lys-20' of histone H4 (H4K20me3). It plays a central role in the establishment of constitutive heterochromatin in pericentric heterochromatin regions.

Pssm-ID: 380962 Cd Length: 142 Bit Score: 45.03 E-value: 3.44e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478 1070 GWGLISLRDIKKGEFVNEYVG---ELIDEEECRSRirhAQENDITHFYMlTIDKDRIIDAGPkgnySRFMNHSCQPNCet 1146
Cdd:cd19185   19 GAKIVSTRAWKKNEKLELLVGciaELREEDEGLLR---AGENDFSIMYS-TRKRSAQLWLGP----AAFINHDCKPNC-- 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 86278478 1147 qKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRC 1189
Cdd:cd19185   89 -KFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCEC 130

PWWP_AtATX3-like

cd20143

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...

191-296

3.89e-05

Pssm-ID: 438971 [Multi-domain] Cd Length: 100 Bit Score: 43.90 E-value: 3.89e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  191 GDVIWTKVSGYPWWPCMITTDPEFNMHFR-SKVNSRTGllyhVQYFGDTPERGY--VFEKCIVTFSGKHqyQSLSRSNQL 267
Cdd:cd20143    3 GDLVWAKVGTHPFWPARVVEPAEQAEEVRrRCVPGSLC----VYFFGPGGSRDYgwVRRSMIFPFTDDL--ARFQTQKIK 76

                         90       100
                 ....*....|....*....|....*....
gi 86278478  268 pinisgrKRAVPRKFRQkweiGVSQAKEA 296
Cdd:cd20143   77 -------NKKRPQEFQE----ALEEAKLA 94

SET_KMT2E

cd19182

SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar ...

1124-1178

6.13e-05

SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; KMT2E (also termed inactive lysine N-methyltransferase 2E, myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) plays a key role in hematopoiesis, spermatogenesis and cell cycle progression. It associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. Lack of key residues in the SET domain as well as the presence of an unusually large loop in the SET-I subdomain preclude the interaction of MLL5 SET with its cofactor and substrate thus making MLL5 devoid of any in vitro methyltransferase activity on full-length histones and histone H3 peptide.

Pssm-ID: 380959 Cd Length: 129 Bit Score: 44.11 E-value: 6.13e-05

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 86278478 1124 IDAGPKGNYSRFMNHSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLD 1178
Cdd:cd19182   73 VDARTFGNEARFIRRSCTPNAEVRHVIEDGTIHLYIYSIRSIPKGTEITIAFDFD 127

PHD_RSF1

cd15543

PHD finger found in Remodeling and spacing factor 1 (Rsf-1); Rsf-1, also termed HBV ...

831-869

9.65e-05

PHD finger found in Remodeling and spacing factor 1 (Rsf-1); Rsf-1, also termed HBV pX-associated protein 8, or Hepatitis B virus X-associated protein alpha (HBxAPalpha), or p325 subunit of RSF chromatin-remodeling complex, is a novel nuclear protein with histone chaperon function. It is a subunit of an ISWI chromatin remodeling complex, remodeling and spacing factor (RSF), and plays a role in mediating ATPase-dependent chromatin remodeling and conferring tumor aggressiveness in common carcinomas. As an ataxia-telangiectasia mutated (ATM)-dependent chromatin remodeler, Rsf-1 facilitates DNA damage checkpoints and homologous recombination repair. It regulates the mitotic spindle checkpoint and chromosome instability through the association with serine/threonine kinase BubR1 (BubR1) and Hepatitis B virus (HBV) X protein (HBx) in the chromatin fraction during mitosis. It also interacts with cyclin E1 and promotes tumor development. Rsf-1 contains a plant homeodomain (PHD) finger.

Pssm-ID: 277018 [Multi-domain] Cd Length: 46 Bit Score: 41.10 E-value: 9.65e-05

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCESCPAAFHPDCLN---IAMPDGSWFCNDC 869
Cdd:cd15543    5 CGLSDHPEWILLCDRCDAGYHTACLRpplMIIPDGNWFCPPC 46

PHD1_NSD1_2

cd15648

PHD finger 1 found in nuclear receptor-binding SET domain-containing protein NSD1 and NSD2; ...

831-870

1.45e-04

Pssm-ID: 277118 Cd Length: 43 Bit Score: 40.53 E-value: 1.45e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCE-SCPAAFHPDCLNI-AMPDGSWFCNDCR 870
Cdd:cd15648    2 CQVCEKPGELLLCEgQCCGAFHLDCIGLsEMPSGKFICDECI 43

PHD_PHF21B

cd15524

PHD finger found in PHD finger protein 21B (PHF21B); PHF21B is a plant homeodomain (PHD) ...

830-869

1.57e-04

PHD finger found in PHD finger protein 21B (PHF21B); PHF21B is a plant homeodomain (PHD) finger-containing protein whose biological function remains unclear. It shows high sequence similarity with PHF21A, which is associated with LSD1, a lysine (K)-specific histone demethylase and inhibits LSD1-mediated histone demethylation in vitro. PHD fingers can recognize the unmodified and modified histone H3 tail, and some have been found to interact with non-histone proteins.

Pssm-ID: 276999 [Multi-domain] Cd Length: 43 Bit Score: 40.26 E-value: 1.57e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15524    1 HCAACKRGGNLQPCGTCPRAYHLDCLDPPLktaPKGVWVCPKC 43

PWWP_PWWP2A

cd20152

PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific ...

190-210

1.91e-04

PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and its paralog PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438980 Cd Length: 122 Bit Score: 42.69 E-value: 1.91e-04

                         10        20
                 ....*....|....*....|.
gi 86278478  190 VGDVIWTKVSGYPWWPCMITT 210
Cdd:cd20152   22 VGDIVWAKIYGFPWWPARILA 42

PHD_BS69

cd15537

PHD finger found in protein BS69; Protein BS69, also termed zinc finger MYND domain-containing ...

830-869

2.42e-04

PHD finger found in protein BS69; Protein BS69, also termed zinc finger MYND domain-containing protein 11 (ZMYND11 or ZMY11), is a ubiquitously expressed nuclear protein acting as a transcriptional co-repressor in association with various transcription factors. It was originally identified as an adenovirus 5 E1A-binding protein that inhibits E1A transactivation, as well as c-Myb transcription. It also mediates repression, at least in part, through interaction with the co-repressor N-CoR. Moreover, it interacts with Toll-interleukin 1 receptor domain (TIR)-containing adaptor molecule-1 (TICAM-1, also named TRIF) to facilitate NF-kappaB activation and type I IFN induction. It associates with PIAS1, a SUMO E3 enzyme, and Ubc9, a SUMO E2 enzyme, and plays an inhibitory role in muscle and neuronal differentiation. Moreover, BS69 regulates Epstein-Barr virus (EBV) latent membrane protein 1 (LMP1)/C-terminal activation region 2 (CTAR2)-mediated NF-kappaB activation by interfering with the complex formation between TNFR-associated death domain protein (TRADD) and LMP1/CTAR2. It also cooperates with tumor necrosis factor receptor (TNFR)-associated factor 3 (TRAF3) in the regulation of EBV-derived LMP1/CTAR1-induced NF-kappaB activation. Furthermore, BS69 is involved in the p53-p21Cip1-mediated senescence pathway. BS69 contains a plant homeodomain (PHD) finger, a bromodomain, a proline-tryptophan-tryptophan-proline (PWWP) domain, and a Myeloid translocation protein 8, Nervy and DEAF-1 (MYND) domain.

Pssm-ID: 277012 Cd Length: 43 Bit Score: 40.02 E-value: 2.42e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 86278478  830 WCFICSKGGRLLCCESCPAAFHPDCLNIAMP---DGSWFCNDC 869
Cdd:cd15537    1 YCFECHAPGEVLPCSGCFRVYHSDCLSEDFRpdsTSHWTCPVC 43

PHD4_NSD

cd15567

PHD finger 4 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

1235-1273

3.66e-04

Pssm-ID: 277042 [Multi-domain] Cd Length: 41 Bit Score: 39.15 E-value: 3.66e-04

                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 86278478 1235 CFRCGDGGQLVLCDkkGCTKAYHLSCLDRTKRPFGRWDC 1273
Cdd:cd15567    2 CFICSEGGSLICCE--SCPASFHPECLGLEPPPEGKFYC 38

PHD1_NSD

cd15564

PHD finger 1 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

666-708

4.18e-04

PHD finger 1 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the first PHD finger.

Pssm-ID: 277039 Cd Length: 43 Bit Score: 39.24 E-value: 4.18e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 86278478  666 VCLVCEQTGEdIVTCAGQCYGTYHLHCIGV-ERSAEKILCTACS 708
Cdd:cd15564    1 VCQICEKPGK-LLTCEGPCCGHFHLDCLGLsEQPDEPFKCDECT 43

PWWP_PWWP2B

cd20153

PWWP domain found in PWWP domain-containing protein 2B (PWWP2B); PWWP2B is a paralog of PWWP2A, ...

175-208

4.33e-04

PWWP domain found in PWWP domain-containing protein 2B (PWWP2B); PWWP2B is a paralog of PWWP2A, a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. PWWP2A and PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438981 Cd Length: 116 Bit Score: 41.48 E-value: 4.33e-04

                         10        20        30
                 ....*....|....*....|....*....|....
gi 86278478  175 VKESYTETQSNVhfSVGDVIWTKVSGYPWWPCMI 208
Cdd:cd20153    3 VSKCVTEEGRTV--SVGDIVWGKIHGFPWWPARV 34

PWWP_HULK

cd20147

PWWP domain found in Arabidopsis thaliana protein HUA2-LIKE (HULK) family; The HULK family ...

191-304

4.82e-04

PWWP domain found in Arabidopsis thaliana protein HUA2-LIKE (HULK) family; The HULK family includes HUA2-like proteins 1-3 (HULK1-3), which are probable transcription factors that act with partial redundancy with each other. They may play diverse and essential roles in the control of plant development, physiology and flowering time. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438975 [Multi-domain] Cd Length: 92 Bit Score: 40.55 E-value: 4.82e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  191 GDVIWTKVSGYPWWPCMITTDPEFNMHFRSKVnsrtgllYHVQYFGdTPERGYVFEKCIVTFSGKHQYQSLSRSnqlpin 270
Cdd:cd20147    1 GDLVLAKVKGFPAWPAQVSEPEDWGSAPDPKK-------VFVHFFG-TQQIGFCNPGELSEFTEEIKQSLLART------ 66

                         90       100       110
                 ....*....|....*....|....*....|....
gi 86278478  271 isgRKRAVPRKFrqkweigvSQAKEALGLLTEER 304
Cdd:cd20147   67 ---LKKKKGSDF--------SRAVKEICELYEER 89

PWWP_ScIOC4-like

cd05840

PWWP domain found in Saccharomyces cerevisiae ISWI one complex protein 4 (ScIOC4) and similar ...

878-928

5.48e-04

Pssm-ID: 438965 Cd Length: 94 Bit Score: 40.36 E-value: 5.48e-04

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 86278478  878 RDVIWVKLGNYRWWPAEIRHPKNIPTNIQHLRHEI-----GEFPVFFFGSKDYFWT 928
Cdd:cd05840    1 GDLVLAKVKGYPPWPAMVLPEELLPKNVLKAKKRKpkskkTVYPVQFFPDNEYYWV 56

PHD5_NSD1

cd15659

PHD finger 5 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1); NSD1, ...

831-866

6.89e-04

Pssm-ID: 277129 Cd Length: 43 Bit Score: 38.77 E-value: 6.89e-04

                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 86278478  831 CFICSKGGRLLCCES--CPAAFHPDCLNIA-MPDGSWFC 866
Cdd:cd15659    2 CFSCGDGGQLVSCKKpgCPKVYHADCLNLTkRPAGKWEC 40

PHD_BAZ2A_like

cd15545

PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B ...

831-869

7.40e-04

PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B); BAZ2A, also termed transcription termination factor I-interacting protein 5 (TTF-I-interacting protein 5, or Tip5), or WALp3, is an epigenetic regulator. It has been implicated in epigenetic rRNA gene silencing, as the large subunit of the SNF2h-containing chromatin-remodeling complex NoRC that induces nucleosome sliding in an ATP- and histone H4 tail-dependent fashion. BAZ2A has also been shown to be broadly overexpressed in prostate cancer, to regulate numerous protein-coding genes and to cooperate with EZH2 (enhancer of zeste homolog 2) to maintain epigenetic silencing at genes repressed in prostate cancer metastasis. Its overexpression is tightly associated with a prostate cancer subtype displaying CpG island methylator phenotype (CIMP) in tumors and with prostate cancer recurrence in patients. BAZ2B, also termed WALp4, is a bromodomain-containing protein whose biological role is still elusive. It shows high sequence similarly with BAZ2A. Both BAZ2A and BAZ2B contain a TAM (TIP5/ARBP/MBD) domain, a DDT domain, four AT-hooks, BAZ 1 and BAZ 2 motifs, a WAKZ (WSTF/Acf1/KIAA0314/ZK783.4) motif, a plant homeodomain (PHD) finger, and a bromodomain. BAZ2B also harbors an extra Apolipophorin-III like domain in its N-terminal region.

Pssm-ID: 277020 [Multi-domain] Cd Length: 46 Bit Score: 38.45 E-value: 7.40e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 86278478  831 CFICSKG---GRLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15545    2 CQICRSGdneDQLLLCDGCDRGYHTYCFKPKMtnvPEGDWFCPEC 46

PHD5_NSD3

cd15661

PHD finger 5 found in nuclear SET domain-containing protein 3 (NSD3); NSD3, also termed ...

830-866

7.78e-04

Pssm-ID: 277131 Cd Length: 43 Bit Score: 38.41 E-value: 7.78e-04

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 86278478  830 WCFICSKGGRLLCCES--CPAAFHPDCLNIAMPD-GSWFC 866
Cdd:cd15661    1 YCFQCGDGGELVMCDKkdCPKAYHLLCLNLTQPPyGKWEC 40

PWWP_NSD_rpt2

cd05838

second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

190-208

8.27e-04

Pssm-ID: 438963 [Multi-domain] Cd Length: 96 Bit Score: 39.92 E-value: 8.27e-04

                         10
                 ....*....|....*....
gi 86278478  190 VGDVIWTKVSGYPWWPCMI 208
Cdd:cd05838    2 YGDIVWVKLGNYRWWPAEI 20

PWWP_HRP

cd05834

PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The ...

879-969

8.91e-04

Pssm-ID: 438959 [Multi-domain] Cd Length: 82 Bit Score: 39.46 E-value: 8.91e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478  879 DVIWVKLGNYRWWPAEIrhpKNIPTNIQHLRheiGEFPVFFFGSKDYFWTHQGRVFPYME-GDRGSKYQQTgigKVFKNA 957
Cdd:cd05834    5 DLVFAKVKGYPPWPARI---DEIPEGAKIPK---NKYPVFFYGTHETAFLKPKDLFPYEEnKEKYGKPRKR---KGFNEG 75

                         90
                 ....*....|..
gi 86278478  958 LldaetrfKEIE 969
Cdd:cd05834   76 L-------WEIE 80

PWWP_MBD5

cd20141

PWWP domain found in methyl-CpG-binding domain protein 5 (MBD5) and similar proteins; MBD5, is ...

188-237

1.02e-03

PWWP domain found in methyl-CpG-binding domain protein 5 (MBD5) and similar proteins; MBD5, is a methyl-CpG-binding protein that binds to heterochromatin. It does not interact with either methylated or unmethylated DNA. MBD5 acts as a transcriptional regulator responsible for 2q23.1 deletion syndrome. It belongs to the MBD family proteins, which play central roles in transcriptional regulation and development. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438969 Cd Length: 92 Bit Score: 39.61 E-value: 1.02e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 86278478  188 FSVGDVIWTKVSGYPWWPCMITTDPEfnmhfrskVNSRTGLLYHVQYFGD 237
Cdd:cd20141    1 FNVGDLVWGQIRGFPSWPGKLVSEND--------VGKTNEGKVWVSWFGD 42

PHD1_Lid2p_like

cd15519

PHD finger 1 found in Schizosaccharomyces pombe Lid2 complex component Lid2p and similar ...

1235-1274

1.25e-03

Pssm-ID: 276994 [Multi-domain] Cd Length: 46 Bit Score: 37.83 E-value: 1.25e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 86278478 1235 CFRCG---DGGQLVLCDkkGCTKAYHLSCLDR--TKRPFGRWDCP 1274
Cdd:cd15519    2 CEVCGlddNEGEVLLCD--GCDAEYHTSCLDPplGEIPPGTWFCP 44

PHD_PHF21A

cd15523

PHD finger found in PHD finger protein 21A (PHF21A); PHF21A (also termed BHC80a or BRAF35-HDAC ...

1235-1274

1.27e-03

Pssm-ID: 276998 [Multi-domain] Cd Length: 43 Bit Score: 37.76 E-value: 1.27e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478 1235 CFRCGDGGQLVLCDKkgCTKAYHLSCLDR--TKRPFGRWDCP 1274
Cdd:cd15523    2 CSVCRKSGELLMCDT--CSLVYHLDCLDPplKTIPKGMWICP 41

SET_SMYD4

cd10536

SET domain (including iSET domain and post-SET domain) found in SET and MYND domain-containing ...

1135-1175

1.27e-03

SET domain (including iSET domain and post-SET domain) found in SET and MYND domain-containing protein 4 (SMYD4) and similar proteins; SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. In zebrafish, SMYD4 is ubiquitously expressed in early embryos and becomes enriched in the developing heart; mutants show a strong defect in cardiomyocyte proliferation, which lead to a severe cardiac malformation.

Pssm-ID: 380934 [Multi-domain] Cd Length: 218 Bit Score: 41.90 E-value: 1.27e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 86278478 1135 FMNHSCQPNCETqkwTVNGDTrVGLFAVCDIPAGTELTFNY 1175
Cdd:cd10536  153 LLNHSCDPNTIR---SFYGNT-IVVRATRPIKKGEEITICY 189

PHD1_Rco1

cd15535

PHD finger 1 found in Saccharomyces cerevisiae transcriptional regulatory protein Rco1 and ...

1235-1281

1.33e-03

Pssm-ID: 277010 [Multi-domain] Cd Length: 45 Bit Score: 37.78 E-value: 1.33e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 86278478 1235 CFRCGDGGQLVLCDkkGCTKAYHLSCLDRTKRPFGRWDCPWhHCDVC 1281
Cdd:cd15535    2 CSACGGYGSFLCCD--GCPRSFHFSCLDPPLEEDNLPDDEW-FCNEC 45

PWWP_BS69

cd20159

PWWP domain found in protein BS69 and similar proteins; Protein BS69, also called zinc finger ...

192-264

1.45e-03

PWWP domain found in protein BS69 and similar proteins; Protein BS69, also called zinc finger MYND domain-containing protein 11 (ZMYND11 or ZMY11), is a ubiquitously expressed nuclear protein acting as a transcriptional co-repressor in association with various transcription factors. It was originally identified as an adenovirus 5 E1A-binding protein that inhibits E1A transactivation, as well as c-Myb transcription. It also mediates repression, at least in part, through interaction with the co-repressor N-CoR. Moreover, it interacts with Toll-interleukin 1 receptor domain (TIR)-containing adaptor molecule-1 (TICAM-1, also named TRIF) to facilitate NF-kappaB activation and type I IFN induction. It associates with PIAS1, a SUMO E3 enzyme, and Ubc9, a SUMO E2 enzyme, and plays an inhibitory role in muscle and neuronal differentiation. Moreover, BS69 regulates Epstein-Barr virus (EBV) latent membrane protein 1 (LMP1)/C-terminal activation region 2 (CTAR2)-mediated NF-kappaB activation by interfering with the complex formation between TNFR-associated death domain protein (TRADD) and LMP1/CTAR2. It also cooperates with tumor necrosis factor receptor (TNFR)-associated factor 3 (TRAF3) in the regulation of EBV-derived LMP1/CTAR1-induced NF-kappaB activation. Furthermore, BS69 is involved in the p53-p21Cip1-mediated senescence pathway. BS69 contains a plant homeodomain (PHD) finger, a bromodomain, a proline-tryptophan-tryptophan-proline (PWWP) domain, and a MYeloid translocation protein 8, Nervy and DEAF-1 (MYND) domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.

Pssm-ID: 438987 Cd Length: 85 Bit Score: 39.12 E-value: 1.45e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86278478  192 DVIWTKVSGYPWWPcmittdpefnmhfrSKVNSRTGLLYHVQYFGDTPERGYVFEKCIVTFSGKHQYQSLSRS 264
Cdd:cd20159    8 ELVWAKQKGFPYWP--------------AKVIQKEDNQYDVRFFGGHHQRAWIPKENIKPITTSPKQLKVKRT 66

PHD_BAZ1A_like

cd15544

PHD finger found in bromodomain adjacent to zinc finger domain protein BAZ1A and BAZ1B; BAZ1A, ...

831-869

1.52e-03

PHD finger found in bromodomain adjacent to zinc finger domain protein BAZ1A and BAZ1B; BAZ1A, also termed ATP-dependent chromatin-remodeling protein, or ATP-utilizing chromatin assembly and remodeling factor 1 (ACF1), or CHRAC subunit ACF1, or Williams syndrome transcription factor-related chromatin-remodeling factor 180 (WCRF180), or WALp1, is a subunit of the conserved imitation switch (ISWI)-family ATP-dependent chromatin assembly and remodeling factor (ACF)/chromatin accessibility complex (CHRAC) chromatin remodeling complex, which is required for DNA replication through heterochromatin. It alters the remodeling properties of the ATPase motor protein sucrose nonfermenting-2 homolog (SNF2H). Moreover, BAZ1A and its complexes play important roles in DNA double-strand break (DSB) repair. It is essential for averting improper gene expression during spermatogenesis. It also regulates transcriptional repression of vitamin D3 receptor-regulated genes. BAZ1B, also termed Tyrosine-protein kinase BAZ1B, or Williams syndrome transcription factor (WSTF), or Williams-Beuren syndrome chromosomal region 10 protein, Williams-Beuren syndrome chromosomal region 9 protein, or WALp2, is a multifunctional protein implicated in several nuclear processes, including replication, transcription, and the DNA damage response. BAZ1B/WSTF, together with the imitation switch (ISWI) ATPase, forms a WSTF-ISWI chromatin remodeling complex (WICH), which transiently associates with the human inactive X chromosome (Xi) during late S-phase prior to BRCA1 and gamma-H2AX. Moreover, BAZ1B/WSTF, SNF2h, and nuclear myosin 1 (NM1) forms the chromatin remodeling complex B-WICH that is involved in regulating rDNA transcription. Both BAZ1A and BAZ1B contain a WAC motif, a DDT domain, BAZ 1 and BAZ 2 motifs, a WAKZ (WSTF/Acf1/KIAA0314/ZK783.4) motif, a plant homeodomain (PHD) finger, and a bromodomain.

Pssm-ID: 277019 Cd Length: 46 Bit Score: 37.78 E-value: 1.52e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 86278478  831 CFICSKGG---RLLCCESCPAAFHPDCLNIAM---PDGSWFCNDC 869
Cdd:cd15544    2 CKVCRKKGdpdNMILCDGCDKAFHLYCLRPALrevPSGDWFCPAC 46

PHD_BAZ1A

cd15627

PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A); BAZ1A, also ...

831-869

1.66e-03

PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A); BAZ1A, also termed ATP-dependent chromatin-remodeling protein, or ATP-utilizing chromatin assembly and remodeling factor 1 (ACF1), or CHRAC subunit ACF1, or Williams syndrome transcription factor-related chromatin-remodeling factor 180 (WCRF180), or WALp1, is a subunit of the conserved imitation switch (ISWI)-family ATP-dependent chromatin assembly and remodeling factor (ACF)/chromatin accessibility complex (CHRAC) chromatin remodeling complex, which is required for DNA replication through heterochromatin. It alters the remodeling properties of the ATPase motor protein sucrose nonfermenting-2 homolog (SNF2H). Moreover, BAZ1A and its complexes play important roles in DNA double-strand break (DSB) repair. It is essential for averting improper gene expression during spermatogenesis. It also regulates transcriptional repression of vitamin D3 receptor-regulated genes. BAZ1A contains a WAC motif, a DDT domain, BAZ 1 and BAZ 2 motifs, a WAKZ (WSTF/Acf1/KIAA0314/ZK783.4) motif, a plant homeodomain (PHD) finger, and a bromodomain.

Pssm-ID: 277097 [Multi-domain] Cd Length: 46 Bit Score: 37.76 E-value: 1.66e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 86278478  831 CFICSKGG---RLLCCESCPAAFHPDCLN---IAMPDGSWFCNDC 869
Cdd:cd15627    2 CRICRRKGdaeKMLLCDGCDRGHHMYCLRpplKKVPEGDWFCPDC 46

PWWP_NSD_rpt1

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

879-936

1.71e-03

Pssm-ID: 438972 Cd Length: 114 Bit Score: 39.60 E-value: 1.71e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 86278478  879 DVIWVKLGNYRWWPAEIRHPkniPTNIQHLRHEIGEFPVF------FFGSKDYF-WTHQGRVFPY 936
Cdd:cd20144    3 DLVWAKVSGHPWWPCMVTYD---PESGLYTKIKGSGGRTYrqyhvqFFGDNGERgWVSEKSLMPF 64

PHD1_PHF12

cd15533

PHD finger 1 found in PHD finger protein 12 (PHF12); PHF12, also termed PHD factor 1 (Pf1), is ...

1235-1278

2.03e-03

Pssm-ID: 277008 [Multi-domain] Cd Length: 45 Bit Score: 37.34 E-value: 2.03e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 86278478 1235 CFRCGDGGQLVLCDKkgCTKAYHLSC----LDRTKRPFGRWDCpwHHC 1278
Cdd:cd15533    2 CDSCGEGGDLLCCDR--CPASFHLQCcnppLDEEDLPPGEWLC--HRC 45

PHD1_NSD

cd15564

PHD finger 1 found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...

831-870

3.24e-03

Pssm-ID: 277039 Cd Length: 43 Bit Score: 36.54 E-value: 3.24e-03

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 86278478  831 CFICSKGGRLLCCE-SCPAAFHPDCLNIA-MPDGSWFCNDCR 870
Cdd:cd15564    2 CQICEKPGKLLTCEgPCCGHFHLDCLGLSeQPDEPFKCDECT 43

SF-CC1

TIGR01622

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...

537-672

3.68e-03

Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 41.44 E-value: 3.68e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86278478    537 KRSRESKQDVTLQPKKKSKLEKDfkkwkcpkaassaaaaVPAPRGRRRKTDRDENRKQSKKASKEEPPPKAKRGRKRKEE 616
Cdd:TIGR01622    2 YRDRERERLRDSSSAGDRDRRRD----------------KGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRR 65

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 86278478    617 SGRHSFPASKKCRPSSYAEPERPD-SPSDSTDESHPSKKTERTPgAKKESVCLVCEQ 672
Cdd:TIGR01622   66 PNRRYRPREKRRRRGDSYRRRRDDrRSRREKPRARDGTPEPLTE-DERDRRTVFVQQ 121

PHD

PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in ...

1235-1276

4.16e-03

Pssm-ID: 214584 [Multi-domain] Cd Length: 47 Bit Score: 36.42 E-value: 4.16e-03

                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 86278478    1235 CFRCGDGGQLVLCDkkGCTKAYHLSCLDRTKR---PFGRWDCPWH 1276
Cdd:smart00249    5 CGKPDDGGELLQCD--GCDRWYHQTCLGPPLLeeePDGKWYCPKC 47

PHD