NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|64311291|gb|AAY41303|]
View 

NADH dehydrogenase subunit 3, partial (mitochondrion) [Megalapteryx didinus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-79 2.00e-31

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member MTH00069:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 114  Bit Score: 105.46  E-value: 2.00e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00069  30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108
 
Name Accession Description Interval E-value
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-79 2.00e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 105.46  E-value: 2.00e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00069  30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-49 1.17e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.85  E-value: 1.17e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAV 60
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 1.46e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.84  E-value: 1.46e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311291   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
 
Name Accession Description Interval E-value
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-79 2.00e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 105.46  E-value: 2.00e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00069  30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-79 3.00e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 105.39  E-value: 3.00e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00136  32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-79 3.08e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 104.96  E-value: 3.08e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00113  31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-78 7.34e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 101.55  E-value: 7.34e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQ 78
Cdd:MTH00106  31 SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQ 108
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 2-79 1.51e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 88.11  E-value: 1.51e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00042  33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-79 2.26e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 80.21  E-value: 2.26e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 2-79 3.44e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 79.90  E-value: 3.44e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00148  34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEG 111
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-48 1.14e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 78.40  E-value: 1.14e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 48
Cdd:MTH00203  33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-49 1.17e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.85  E-value: 1.17e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAV 60
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 2-79 2.53e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 75.03  E-value: 2.53e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00202  34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEG 111
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 2-79 2.79e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 69.89  E-value: 2.79e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLG***EWMQG 79
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREG 111
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 1.46e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.84  E-value: 1.46e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311291   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-49 5.20e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 66.81  E-value: 5.20e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:PRK06602  40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAV 85
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-44 9.11e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 65.89  E-value: 9.11e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 44
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFP 79
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-44 3.50e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 59.30  E-value: 3.50e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 44
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 1-49 4.21e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 54.17  E-value: 4.21e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 64311291    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSI 87
ndhC CHL00022
NADH dehydrogenase subunit 3
 2-49 1.53e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 44.98  E-value: 1.53e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311291    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAM 84
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 3-43 4.88e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.65  E-value: 4.88e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 64311291    3 KLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLL 43
Cdd:MTH00092  34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-49 7.66e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 40.81  E-value: 7.66e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 64311291    3 KLSPYECGFDPLGSARlPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAV 90
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 5-46 1.63e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.80  E-value: 1.63e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 64311291    5 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 46
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH