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Conserved domains on  [gi|62721980|gb|AAX94387|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Cyprinodon nazas]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 586.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNATILLLLGVAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*..
gi 62721980  321 ATLPLAIASSATICLLPLAPATAALFT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 586.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNATILLLLGVAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*..
gi 62721980  321 ATLPLAIASSATICLLPLAPATAALFT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-299 6.47e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.81  E-value: 6.47e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   9 LLFGLgLGTTITFASSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLF--------------A 73
Cdd:COG1007 108 LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlA 186

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  74 SISNAwLSGQWEIHQMAhPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI-------- 145
Cdd:COG1007 187 GIAAA-LAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 146 QPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLF-----I 216
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFavillL 344

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 217 SFKINNATNINTLATSWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLS 296
Cdd:COG1007 345 SRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                ...
gi 62721980 297 YAM 299
Cdd:COG1007 425 KAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-299 1.88e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.88e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    23 SSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPT------ 95
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    96 ------ALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI--------QPTNATILLLLGVAST 161
Cdd:TIGR01770 201 llllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLFISF------KINNATNINTLAT 231
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62721980   232 SWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAM 299
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.29e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 87.37  E-value: 1.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    23 SSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPTA----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    97 ------LITLALALKIGLAPLHTWMPEVLQGLDLTTGLIL-STWQKLAPFCL------LLQIQPTNATILLLLGVASTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   164 GGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLF-----ISFKINNATNINTLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 62721980   235 KAPALTSIIPLILLSLGGLPPLTGFLPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 586.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNATILLLLGVAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*..
gi 62721980  321 ATLPLAIASSATICLLPLAPATAALFT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 4.87e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 415.86  E-value: 4.87e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPT-NATILLLLGVA 159
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPAL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  240 TSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLpSL 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                        330       340
                 ....*....|....*....|....*..
gi 62721980  320 QATLPLAIASSATICLLPLAPATAALF 346
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 1.26e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 374.16  E-value: 1.26e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQP-TNATILLLLGVA 159
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNsLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPAL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  240 TSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSL 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|.
gi 62721980  320 QATLpLAIASSATICLLPLAP 340
Cdd:MTH00112 321 KNTL-TATLTTLSTLLLPLSP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.66e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 373.03  E-value: 3.66e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPT-NATILLLLGVA 159
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSiNPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPAL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  240 TSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSL 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 62721980  320 QATLPLAIASSATICLLPLAPATAALF 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 6.68e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 331.93  E-value: 6.68e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQP-TNATILLLLGVA 159
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPaLNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPAL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  240 TSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSL 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*...
gi 62721980  320 qATLPLAIASSATICLLPLAPATAALFT 347
Cdd:MTH00200 321 -SNLLVGLLLLLSILGLPLTPQLLFLFF 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-340 2.57e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 261.40  E-value: 2.57e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI-QPTNATILLLLGVA 159
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPAL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  240 TSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSL 319
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|.
gi 62721980  320 QATLPLAIASSATICLLPLAP 340
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLL 341
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-307 8.47e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 203.13  E-value: 8.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    1 MNPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWL 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGqweihqMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIqpTNATILLLLGVAS 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILS 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALT 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNN 307
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKN 300
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-319 2.87e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.85  E-value: 2.87e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   10 LFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIhqm 89
Cdd:MTH00144  10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   90 ahplpTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTN--ATILLLLGVASTLVGGWG 167
Cdd:MTH00144  87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYwlAYLLCVISVLSALVGSIG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLaTSWAKAPALTSIIPLIL 247
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62721980  248 LSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSL 319
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 15-298 2.00e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.72  E-value: 2.00e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   15 LGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISnawlsgQWEIHQMAHPLP 94
Cdd:MTH00011  17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNIT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   95 TALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNAT-ILLLLGVASTLVGGWGGLNQTQ 173
Cdd:MTH00011  91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILpMMTSMAAMSALAGGLGGMNQTQ 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  174 LRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALTSIIPLILLSLGGL 253
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 62721980  254 PPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYA 298
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-297 2.94e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 157.14  E-value: 2.94e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    9 LLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLF---ASISNAWLSgqwe 85
Cdd:MTH00197   3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYLS---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   86 ihqmahPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQpTNATILLLLGVASTLVGG 165
Cdd:MTH00197  79 ------LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS-SSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINTLATSWAKAPALTSIIPL 245
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 62721980  246 ILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSY 297
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-299 6.47e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.81  E-value: 6.47e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   9 LLFGLgLGTTITFASSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLF--------------A 73
Cdd:COG1007 108 LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlA 186

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  74 SISNAwLSGQWEIHQMAhPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI-------- 145
Cdd:COG1007 187 GIAAA-LAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 146 QPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLF-----I 216
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFavillL 344

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 217 SFKINNATNINTLATSWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLS 296
Cdd:COG1007 345 SRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                ...
gi 62721980 297 YAM 299
Cdd:COG1007 425 KAM 427
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-295 9.87e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 101.25  E-value: 9.87e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   13 LGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHP-RAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSaYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   92 PLPT----ALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNaTILLLLGVASTLVGGWG 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVT-NVVLICAVLSIIYGAIG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  168 GLNQTQLRKILAYSSIAHLGWMILVLQF----SPSLTFLTLLVYFIMT---FSLFISFKINNATNINTLATSwAKAPALT 240
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSicsFSIILSLKLTKGLIVEVSGLS-RKNPVIA 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRL 295
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-295 2.54e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.95  E-value: 2.54e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   15 LGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHP-RAVEAATKYFLAQATAAAMLLFA-------------SISNAWL 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   81 SGQWEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPtNATILLLLGVAS 160
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL-NVNILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQF----SPSLTFLTLLVYFIMT---FSLFISFKINNATNINTLATSw 233
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSicvFSIILALNVYKNLIIEFSGLS- 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62721980  234 AKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRL 295
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-299 6.32e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.12  E-value: 6.32e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    9 LLFGLgLGTTITFASSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLL--------------FA 73
Cdd:PRK05777 109 VLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFA 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   74 SISNAWLSGQweIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI-------- 145
Cdd:PRK05777 188 GIAKALADGS--GNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggl 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  146 QPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLF-----I 216
Cdd:PRK05777 266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFgvislL 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  217 SFKINNATNINTLATSWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLS 296
Cdd:PRK05777 346 RRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425


                 ...
gi 62721980  297 YAM 299
Cdd:PRK05777 426 KLM 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-299 1.88e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.88e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    23 SSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPT------ 95
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    96 ------ALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI--------QPTNATILLLLGVAST 161
Cdd:TIGR01770 201 llllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLFISF------KINNATNINTLAT 231
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62721980   232 SWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAM 299
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.29e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 87.37  E-value: 1.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    23 SSHWLFAWMGLEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPTA----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    97 ------LITLALALKIGLAPLHTWMPEVLQGLDLTTGLIL-STWQKLAPFCL------LLQIQPTNATILLLLGVASTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   164 GGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSLTFLTLLVYFIMTFSLF-----ISFKINNATNINTLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 62721980   235 KAPALTSIIPLILLSLGGLPPLTGFLPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-300 3.29e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.04  E-value: 3.29e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   2 NPYILATLLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLS 81
Cdd:COG0651 105 RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAT 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  82 GQWEIHQMAHPLPT----------ALITLALALKIGLAPLHTWMPE-----------VLQGLDLTTGL--ILSTWQKLAP 138
Cdd:COG0651 185 GTLNMADLAARLAEldpglllaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFG 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 139 FCLLLQIQPtnatILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFI----MTFSL 214
Cdd:COG0651 265 ADPALFLGT----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALL 340

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 215 FIS----FKINNATNINTLATSWAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLF 290
Cdd:COG0651 341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420

                       330
                ....*....|
gi 62721980 291 FYLRLSYAMA 300
Cdd:COG0651 421 YFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-191 2.47e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.04  E-value: 2.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    9 LLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAV---------EAATKYFLAQATAAAMLLFASISNAW 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   80 LSGQ--------------WEIHQMAHPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI 145
Cdd:MTH00198 273 FTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 62721980  146 QPTnATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:MTH00198 353 VIT-SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-311 4.04e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.87  E-value: 4.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   51 RAVEAATKYFLAQATAAAMLLFASisnAWL----SGQWEIHQMAHPLPT-------------ALITLALALKIGLAPLHT 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGF---SWLyglsGGEIELQEIVNGLINtqmynspgisialIFITVGIGFKLSLAPFHQ 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  114 WMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI--------QPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAH 185
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfsSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  186 LGW-MILVLQFSPSLTFLTLLVYFIM-------TFSLFISFKINNAT-NINTLATSWAKAPALTSIIPLILLSLGGLPPL 256
Cdd:CHL00049 316 IGYvIIGIIVGDSNDGYASMITYMLFyifmnlgTFACIVLFGLRTGTdNIRDYAGLYTKDPFLALSLALCLLSLGGIPPL 395

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 62721980  257 TGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLsyaMALTMTPNNLTAT 311
Cdd:CHL00049 396 AGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI---IKLLMTGRNQEIT 447
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-345 3.71e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.05  E-value: 3.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   33 LEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLP--------TALITLALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAenptvvtaFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  105 KIGLAPLHTWMPEVLQGLDLTTGLILS-TWQKLAPFCLL----------LQIQPTNATILLLLGVASTLVGGWGGLNQTQ 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  174 LRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYF----IMTFSLFIS----FKINNATNINTLATSWAKAPALTSIIPL 245
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  246 ILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNltATLPWRLPSLQATLPL 325
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPG--SEAPKQEAPLGMLAPS 452

                        330       340
                 ....*....|....*....|
gi 62721980  326 AIASSATICLLPLAPATAAL 345
Cdd:PRK08375 453 LALALLSLLLGIYAGPLLQL 472
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-340 8.16e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 53.80  E-value: 8.16e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 62721980   290 FFYLRLSYAMALTMTPNNLTATLPWRLPSLQATLPLAIASSATICLLPLAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-299 1.09e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 56.52  E-value: 1.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   44 MAQSHHPRAVEAATKYFLAQATAAAMLLFASIS-------------NAWLSGQWEIHQMA---HPLPTALITLALAL--- 104
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlSAKIRGLSFPLTGGlagNPPLALGVALALALwaf 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  105 --KIGLAPLHTWMPEV-----------LQGLDLTTG---------LILSTWQKLAPFCLLLQIqptnatILLLLGVASTL 162
Cdd:PRK12667 234 tiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP------ILIILGAVSAI 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  163 VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFI----------MTFSLFIsfKINNATNINTLATS 232
Cdd:PRK12667 308 IGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAGL 385

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62721980  233 WAKAPALTSIIPLILLSLGGLPPLTGFLPKWLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAM 299
Cdd:PRK12667 386 GRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 2.52e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    50 PRAVEAATKYFLAQATAAAMLLFASISNAWLSG------QWEIHQMAHPLPTAL---ITLALALKIGLAPLHTWMPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLflaFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62721980   120 QGLDLTTGLILSTWQKLAPFCLL---LQIQPTN----ATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLrfnLPLFPDAslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-191 2.94e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.09  E-value: 2.94e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  49 HPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQW-----EIHQMAHPLPT-----ALITLALALKIGLAPLHTWMPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 119 LQ-----GLDLTTGLILstwqKLAPFCLL---LQIQP----TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHL 186
Cdd:COG1008 236 HVeaptaGSVLLAGVLL----KMGGYGLLrfaLPLFPeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                ....*
gi 62721980 187 GWMIL 191
Cdd:COG1008 312 GFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-299 4.87e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 54.29  E-value: 4.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   50 PRAVEAATKYFLAQATAAAMLLF-ASISNAWLSGQWEIHQMAHPL---PTALITLAL-------ALKIGLAPLHTWMPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitsPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  119 LQGLDLTTGLILSTWQKLAPFCLLLQIQPTN--------ATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAfpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  191 LVL----QFSPSLTFLTLLVYFIMT---FSLFISFKINNATN-INTLATSWAKAPALTSIIPLILLSLGGLPPLTGFLPK 262
Cdd:PRK02504 317 IGLvagtEAGYASMVFYLLAYLFMNlgaFACVILFSLRTGTDqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 62721980  263 WLILQELTKQDLAPLATIAALSALLSLFFYLRLSYAM 299
Cdd:PRK02504 397 IYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
9-191 1.51e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 49.70  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980    9 LLFGLGLGTTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIH- 87
Cdd:PRK06473 112 LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDy 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   88 --QMAHPLPTA-------LITLALALKIGLAPLHTWMPE-----------VLQG--LDLTT--------GLILSTWQKLA 137
Cdd:PRK06473 192 epLRSHTLPLStqllllaPILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLA 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 62721980  138 PFclllqiqptnatiLLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK06473 272 PW-------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 97-271 2.03e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 48.71  E-value: 2.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   97 LITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNATILLLLGVASTLVGGWgglNQTQLRK 176
Cdd:MTH00091  62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMF---LLKSYKN 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  177 ILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFIMTFSLFISFKINNATNINtlatSWAKAPALTSIIPLIllslgglppl 256
Cdd:MTH00091 139 LLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFV----SWETLLVFMNLPFSV---------- 204

                        170
                 ....*....|....*
gi 62721980  257 tGFLPKWLILQELTK 271
Cdd:MTH00091 205 -TFFVKIFSLSEILK 218
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 6.18e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.78  E-value: 6.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   33 LEINTLAIIPLMA-QSHHPRAVEAATKYFLAQATAAAMLLFASisnAWLSGQWEIHQMAH--------PLPTALITLA-- 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmsenPTVVAKIALAlf 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  102 ---LALKIGLAPLHTWMPEVLQGL--DLTTGLILSTWQKL-APFCLLLQI------QPTNATILLLLGVASTLVGGWGGL 169
Cdd:PRK08376 227 iagLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIygpainLATVGWVIIILGCLTMFVGVAMAV 306

                        170       180
                 ....*....|....*....|..
gi 62721980  170 NQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLL 328
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 30-193 7.97e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.23  E-value: 7.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   30 WMGLEINTLAIIPLMAQSHHPRAVEAATKYFL------AQATAAAMLLFASISNAWLSGQ----W-EIHQMAHPLPTALI 98
Cdd:PRK06458 134 WVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEmailWtELLKHASLLDPTLM 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   99 TLALAL-------KIGLAPLHTWMPE-----------VLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNatILLLLGVAS 160
Cdd:PRK06458 214 KLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYILIDAAIGSDFPGR--LLLIFGLLS 291

                        170       180       190
                 ....*....|....*....|....*....|...
gi 62721980  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK06458 292 VLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFAL 324
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-202 2.13e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 46.24  E-value: 2.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   55 AATKYFLAQATAAAMLLFASISNAWLSGQW-----EIHQMAHPLPTALITLALAL-----KIGLAPLHTWMPEVLQGLDL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTsfdydAISTQNLSLNTQLILLTGLLlgfgiKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  125 TTGLILS-TWQKLAPFCLL---LQIQP----TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFS 196
Cdd:PRK07363 238 AVAILLGgVLAKLGTYGLLrfgLQLFPqtwsLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                 ....*.
gi 62721980  197 PSLTFL 202
Cdd:PRK07363 318 TQLSLL 323
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 4.33e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 4.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   50 PRAVEAATKYFLAQATAAAMLLFASISNAWLS----GQWEIHQ-MAHPLPTALITL-------ALALKIGLAPLHTWMPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatGTFDIADlLNLPLPPGVQYWlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  118 V-----LQGLDLTTGLILstwqKLAPFCLL---LQIQPTN----ATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAH 185
Cdd:PRK05846 237 AhvqapTAGSVLLAGILL----KMGAYGLLrfsLPLFPDAshefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*.
gi 62721980  186 LGWMIL 191
Cdd:PRK05846 313 MGFVTL 318
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-191 5.47e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.94  E-value: 5.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   19 ITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYfLAQATAA-------AMLLFASISNAWLSGQweihQMAH 91
Cdd:PRK07234 109 AAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRY-LFYSNVAmlfyligAVLVYQANGTFAFSGL----ATAD 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   92 PLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTGLILS-TWQKLAPFCL--LLQIQPTNATILLLLGVASTLVGGWGG 168
Cdd:PRK07234 184 PEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLvrCALDVPGLDLIVRIFGVGTALLGVLFA 263

                        170       180
                 ....*....|....*....|...
gi 62721980  169 LNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK07234 264 LLEKDLKRMLAFSTISQLGFILA 286
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-193 1.30e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.30e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  48 HHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPTA----LITLALAL-------KIGLAPLHTWMP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTIlsspLLTLILLLlllgafgKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980 117 EVLQG-----------LDLTTGLILstwqkLAPFCLLLQIQPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAH 185
Cdd:COG1009 236 DAMEGptpvsallhaaTMVKAGVYL-----LARLSPLFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQ 310


                ....*...
gi 62721980 186 LGWMILVL 193
Cdd:COG1009 311 LGYMFLAL 318
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-191 1.62e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   55 AATKYFLAQATAAAMLLFASISNAWLSGQW-----EIHQMAHPLPTALIT-----LALALKIGLAPLHTWMPEVLQGLDL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTFtfdlaELGAKSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62721980  125 TTGLILS-TWQKLAPFCLL---LQIQP----TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIrfnVQMLPdahvYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-297 4.19e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.99  E-value: 4.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  111 LHTWMPEVLQGLDLTTGLILSTWQKLAPFCLL------LQIQPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirssplFEQAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  185 HLGWMILVLQFSpsltFLTLLVYFIMTFSLFISFKINNATN-INTLA--TSWAKAPALTSIIPLILLSLGGLPP------ 255
Cdd:MTH00020 309 QLGYMVVACGLS----HYSISLFHLMNHAFFKALLFLSAGSvIHALSdeQDMRKMGGLISFLPLTYIFFLIGSLslmgfp 384

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 62721980  256 -LTGFLPKWLILQELTKQD-LAPLATIAALSALLSLFFYLRLSY 297
Cdd:MTH00020 385 yLTGFYSKDLILELAFGQYyLIFAYWLGCFSALLTAFYSIRLIY 428
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-209 4.52e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.05  E-value: 4.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   17 TTITFASSHWLFAWMGLEINTLAIIPLMAQSHHPRAVEAATKYFLAQATA------AAMLLFASISNAWLSG--QW-EIH 87
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWtELA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   88 QMAHPLPTALITLA-------LALKIGLAPLHTWMPE-----------VLQGLDLTTGLilstWQKLAPFCLLLQIQ--P 147
Cdd:PRK08676 195 AHASLLSPSVLGASflfifigFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGI----YGILRLSALLRQSGaaE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62721980  148 TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFI 209
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-190 6.60e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 41.42  E-value: 6.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   50 PRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMA--HPLPTALITLALALKIGLAPLHTWMPEVLQGLDLTTG 127
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAIAglGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62721980  128 LILSTW-QKLAPFCLLLQIQPTNatILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190
Cdd:PRK12668 219 VFLSAFtTKTAVYALARAFPGTE--LLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMV 280
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-193 6.61e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.48  E-value: 6.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  111 LHTWMPEVLQGLDLTTGLILSTWQKLAPFCL------LLQIQPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLmirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                 ....*....
gi 62721980  185 HLGWMILVL 193
Cdd:MTH00032 324 QLGYMVLII 332
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.24e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.49  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   33 LEINTLAIIPLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMA---HPLPTA--------LITLA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFliiQDLPTNraiqigvlFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  102 LALKIGLAPLHTWMPEVLQGLDLTTGLILS-TWQKLAPFCL-----------LLQIQPTNATILLLLGVASTLVGGWGGL 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMILAALAIVFGSVLAI 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTFLTLLVYFI----MTFSLF-----ISFKINNaTNINTLATSWAKAPALT 240
Cdd:PRK12662 299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFmvsgsISYHFGT-TKLEDCLNLWKSMPKIT 377

                        250       260
                 ....*....|....*....|....*.
gi 62721980  241 SIIPLILLSLGGLPPLTGFLPKWLIL 266
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-191 1.78e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.07  E-value: 1.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   18 TITFASSHWL---FAWM--GLEINTLaiipLMAQSHHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEI-----H 87
Cdd:PRK08168 114 HLLVLSDHLLvliAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLsalwaH 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   88 QMAHPLPTA------LITLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCL-----LLQIQPTNATILLLL 156
Cdd:PRK08168 190 LAAQGASPSlqaaalLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLirfapLLEQAPPARWLLVLV 269

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 62721980  157 GVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK08168 270 GLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 111-333 2.25e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.99  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  111 LHTWMPEVLQGLDLTTGLILSTWQKLAPFCL------LLQIQPTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00210 230 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLiirsgpLFEGSPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCS 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  185 HLGWMILV---LQFSPSLTFLTLLVYFIMTfsLFIS-----FKINNATNINTLAtSWAKAPALTSIIPLI-LLSLGGLPP 255
Cdd:MTH00210 310 QLGYMVMVcgiSNYSTSLFHLMNHAFFKAL--LFLSagsviHAVSDEQDMRKMG-GLIKSIPFTYVMILIgSLSLMGFPY 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  256 LTGFLPKWLILqELT--KQDLAPLATIAALSALLSLFFYLRLSYAMALTMTPNNLTATLPWRLPSLQATLPLAIASSATI 333
Cdd:MTH00210 387 LTGFYSKDLIL-ELTydKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGVHESSWNITFPLLLLAFGSI 465
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-191 3.55e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 3.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   52 AVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPTAL----ITLALALKIGLA------------PLHTWM 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVssgaVSGWLALLLCILvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  116 PEVLQGLDLTTGLILSTWQKLAPFCLLLQIQP------TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWM 189
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfeqfpAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYM 330


                 ..
gi 62721980  190 IL 191
Cdd:PRK07376 331 VM 332
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-189 5.43e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.74  E-value: 5.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   75 ISNAWL---SGQWEIHQM------AHPLPTALItLALALKIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQI 145
Cdd:MTH00066 182 LSMAWLamnTNSWELQQIfllndnSTLPLLGLI-LAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRF 260

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 62721980  146 QP------TNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWM 189
Cdd:MTH00066 261 HPllennqTALTICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLM 310
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 90-193 6.77e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 38.37  E-value: 6.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   90 AHPLPTALITLALAL-------KIGLAPLHTWMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQPTNAT------ILLLL 156
Cdd:PRK12644 194 ADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADvpvwrpTVLVL 273

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 62721980  157 GVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK12644 274 GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 6.82e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 6.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   48 HHPRAVEAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPL---------PTALITLAL-----ALKIGLAPLHT 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSelienikghPLFLITLILifigaAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  114 WMPEVLQGLDLTTGLILSTWQKLAPFCLLLQIQP----TNATILLL--LGVASTLVGGWGGLNQTQLRKILAYSSIAHLG 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPifsgTEAWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*....
gi 62721980  188 WMILVLQFS 196
Cdd:PRK12649 316 YLMTMYGYT 324
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 54-201 8.76e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.05  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980   54 EAATKYFLAQATAAAMLLFASISNAWLSGQWEIHQMAHPLPTA-----------LITLALALKIGLAPLHTWMPEVLQGL 122
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLINDtstgfalivflFLLAFGVAKAGIFPLHVWAPDAYSEA 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62721980  123 DLTTGLILS-TWQKLAPFCLLLQIQ-----------------PTNATILLLLGVASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:PRK08668 227 PQSFSAVLSgQLSKLGAYGFLLVLYvlpgtklfsefgtyrgvPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306

                        170
                 ....*....|....*..
gi 62721980  185 HLGWMILVLQFSPSLTF 201
Cdd:PRK08668 307 NGGYILVGLGLGTSLGF 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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