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Conserved domains on  [gi|55733731|gb|AAV59262|]
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At5g05850 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11471121)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
220-406 3.28e-36

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 138.91  E-value: 3.28e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 220 PEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHCGSLV 299
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 300 VLDASYNNLTYLPTNIGfELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELNGLPnSFGLLTNLEYLNLSSNfsD 379
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 55733731 380 LQDLPASfGDLISLQELDLSNNQIHSL 406
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 392-427 4.54e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


:

Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.00  E-value: 4.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 55733731   392 SLQELDLSNNQIHSLPdAFGTLVNLTKLNLDQNPLV 427
Cdd:pfam12799   2 NLEVLDLSNNQITDIP-PLAKLPNLETLDLSGNNKI 36
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
220-406 3.28e-36

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 138.91  E-value: 3.28e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 220 PEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHCGSLV 299
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 300 VLDASYNNLTYLPTNIGfELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELNGLPnSFGLLTNLEYLNLSSNfsD 379
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 55733731 380 LQDLPASfGDLISLQELDLSNNQIHSL 406
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 206-426 5.12e-18

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 87.60  E-value: 5.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  206 LDRVDLSGRKL--KLLPEAFGKIQGLLVLNLYNNQLQAiPDSIAGLHNLLELDVSTNFLE-TLPDSIGLLSKLKILNVSC 282
Cdd:PLN00113  95 IQTINLSNNQLsgPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLSgEIPNDIGSFSSLKVLDLGG 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  283 NKLT-TLPDSICHCGSLVVLDASYNNLTylpTNIGFELVKLEKL-LIHL---NKIRSLPTSIGEMRSLRYLDAHFNELNG 357
Cdd:PLN00113 174 NVLVgKIPNSLTNLTSLEFLTLASNQLV---GQIPRELGQMKSLkWIYLgynNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55733731  358 -LPNSFGLLTNLEYLNLSSN-FSDlqDLPASFGDLISLQELDLSNNQIH-SLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PLN00113 251 pIPSSLGNLKNLQYLFLYQNkLSG--PIPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNF 320
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 211-426 6.10e-11

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 62.11  E-value: 6.10e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 211 LSGRKLKLLpEAFGKIQGLLVLNLYNNQLQAIPDsIAGLHNLLELDVSTNFLETLpDSIGLLSKLKILNVSCNKLTTLpd 290
Cdd:cd21340   9 LNDKNITKI-DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRISVV-- 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 291 sichcgslvvldasyNNLTYLPtnigfelvKLEKLliHLNKIRSLPtsiGEM-----RSLRyldahfnelnglpnsfGLL 365
Cdd:cd21340  84 ---------------EGLENLT--------NLEEL--HIENQRLPP---GEKltfdpRSLA----------------ALS 119

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55733731 366 TNLEYLNLSSN-FSDLQDLpasfGDLISLQELDLSNNQIHSLPD---AFGTLVNLTKLNLDQNPL 426
Cdd:cd21340 120 NSLRVLNISGNnIDSLEPL----APLRNLEQLDASNNQISDLEElldLLSSWPSLRELDLTGNPV 180
LRR_8 pfam13855
Leucine rich repeat;
366-426 4.27e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.53  E-value: 4.27e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 55733731   366 TNLEYLNLSSNFsdLQDL-PASFGDLISLQELDLSNNQIHSL-PDAFGTLVNLTKLNLDQNPL 426
Cdd:pfam13855   1 PNLRSLDLSNNR--LTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 392-427 4.54e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.00  E-value: 4.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 55733731   392 SLQELDLSNNQIHSLPdAFGTLVNLTKLNLDQNPLV 427
Cdd:pfam12799   2 NLEVLDLSNNQITDIP-PLAKLPNLETLDLSGNNKI 36
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
220-406 3.28e-36

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 138.91  E-value: 3.28e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 220 PEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHCGSLV 299
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 300 VLDASYNNLTYLPTNIGfELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELNGLPnSFGLLTNLEYLNLSSNfsD 379
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 55733731 380 LQDLPASfGDLISLQELDLSNNQIHSL 406
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
203-432 1.25e-35

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 137.37  E-value: 1.25e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 203 ENPLDRVDLSGRKLKLLPEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNfletlpDSIGLLSKLKILNVSC 282
Cdd:COG4886  49 LTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EELSNLTNLESLDLSG 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 283 NKLTTLPDSICHCGSLVVLDASYNNLTYLPTNIGfELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELNGLPNSF 362
Cdd:COG4886 123 NQLTDLPEELANLTNLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPL 201

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 363 GLLTNLEYLNLSSNfsDLQDLPASFGDLISLQELDLSNNQIHSLPDaFGTLVNLTKLNLDQNPLVVPPDE 432
Cdd:COG4886 202 GNLTNLEELDLSGN--QLTDLPEPLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPPL 268
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
206-493 1.35e-34

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 134.68  E-value: 1.35e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 206 LDRVDLSGRKLKLLPEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKL 285
Cdd:COG4886 115 LESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQI 194

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 286 TTLPDSICHCGSLVVLDASYNNLTYLPTNIGfELVKLEKLLIHLNKIRSLPtSIGEMRSLRYLDAHFNELNGLPNSFGlL 365
Cdd:COG4886 195 TDLPEPLGNLTNLEELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLPPLAN-L 271

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 366 TNLEYLNLSSN---FSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLVNLTKLNLDQNPLVVPPDEVVKQGVDAVK 442
Cdd:COG4886 272 TNLKTLDLSNNqltDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLT 351

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|.
gi 55733731 443 MYMGKRWVSMLEEEEKMANMKDEMDQTNTDWLTRTTSKLKTYVTEVSEYLG 493
Cdd:COG4886 352 LLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLL 402
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
216-426 2.12e-26

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 111.18  E-value: 2.12e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 216 LKLLPEAFGKIQGLLVLNLYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHC 295
Cdd:COG4886  16 LLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDL 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 296 GSLVVLDASY-----------------NNLTYLPTNIGfELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELNGL 358
Cdd:COG4886  96 TNLTELDLSGneelsnltnlesldlsgNQLTDLPEELA-NLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDL 174

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 55733731 359 PNSFGLLTNLEYLNLSSNfsDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLVNLTKLNLDQNPL 426
Cdd:COG4886 175 PEELGNLTNLKELDLSNN--QITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQL 240
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 206-426 5.12e-18

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 87.60  E-value: 5.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  206 LDRVDLSGRKL--KLLPEAFGKIQGLLVLNLYNNQLQAiPDSIAGLHNLLELDVSTNFLE-TLPDSIGLLSKLKILNVSC 282
Cdd:PLN00113  95 IQTINLSNNQLsgPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLSgEIPNDIGSFSSLKVLDLGG 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  283 NKLT-TLPDSICHCGSLVVLDASYNNLTylpTNIGFELVKLEKL-LIHL---NKIRSLPTSIGEMRSLRYLDAHFNELNG 357
Cdd:PLN00113 174 NVLVgKIPNSLTNLTSLEFLTLASNQLV---GQIPRELGQMKSLkWIYLgynNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55733731  358 -LPNSFGLLTNLEYLNLSSN-FSDlqDLPASFGDLISLQELDLSNNQIH-SLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PLN00113 251 pIPSSLGNLKNLQYLFLYQNkLSG--PIPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNF 320
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 204-424 2.31e-17

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 85.67  E-value: 2.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  204 NPLDRV--DLSGRklklLPEAFGKIQGLLVLNLYNNQLQA-IPDSIAGLHNLLELDVSTNFLE----------------- 263
Cdd:PLN00113 239 NHLDLVynNLTGP----IPSSLGNLKNLQYLFLYQNKLSGpIPPSIFSLQKLISLDLSDNSLSgeipelviqlqnleilh 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  264 --------TLPDSIGLLSKLKILNVSCNKLT-TLPDSICHCGSLVVLDASYNNLT-YLPTNIgFELVKLEKLLIHLNKIR 333
Cdd:PLN00113 315 lfsnnftgKIPVALTSLPRLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNLTgEIPEGL-CSSGNLFKLILFSNSLE 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  334 S-LPTSIGEMRSLRYLDAHFNELNG-LPNSFGLLTNLEYLNLSSNfsDLQ-DLPASFGDLISLQELDLSNNQIH-SLPDA 409
Cdd:PLN00113 394 GeIPKSLGACRSLRRVRLQDNSFSGeLPSEFTKLPLVYFLDISNN--NLQgRINSRKWDMPSLQMLSLARNKFFgGLPDS 471

                        250
                 ....*....|....*
gi 55733731  410 FGTlVNLTKLNLDQN 424
Cdd:PLN00113 472 FGS-KRLENLDLSRN 485
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 224-426 8.38e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 80.66  E-value: 8.38e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  224 GKIQGLLVLNLYNNQLQA-IPDSIAGLHNLLELDVSTNFLE-TLPDSIGLLSKLKILNVSCNKLT-TLPDSICHCGSLVV 300
Cdd:PLN00113 137 GSIPNLETLDLSNNMLSGeIPNDIGSFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQLVgQIPRELGQMKSLKW 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  301 LDASYNNLT-YLPTNIGfELVKLEKL-LIHLNKIRSLPTSIGEMRSLRYLDAHFNELNG-LPNSFGLLTNLEYLNLSSNF 377
Cdd:PLN00113 217 IYLGYNNLSgEIPYEIG-GLTSLNHLdLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGpIPPSIFSLQKLISLDLSDNS 295

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 55733731  378 ---------SDLQDL--------------PASFGDLISLQELDL-SNNQIHSLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PLN00113 296 lsgeipelvIQLQNLeilhlfsnnftgkiPVALTSLPRLQVLQLwSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
229-433 2.01e-15

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 79.36  E-value: 2.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  229 LLVLNLYNNQLQAIPDSIAGlhNLLELDVSTNFL----ETLPDSIGLL---------------SKLKILNVSCNKLTTLP 289
Cdd:PRK15370 201 ITTLILDNNELKSLPENLQG--NIKTLYANSNQLtsipATLPDTIQEMelsinritelperlpSALQSLDLFHNKISCLP 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  290 DSICHcgSLVVLDASYNNLTYLPTNigfelvklekllihlnkirsLPTSIGEmrslryLDAHFNELNGLPNSfgLLTNLE 369
Cdd:PRK15370 279 ENLPE--ELRYLSVYDNSIRTLPAH--------------------LPSGITH------LNVQSNSLTALPET--LPPGLK 328

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 55733731  370 YLNLSSNfsDLQDLPASFGDliSLQELDLSNNQIHSLPDAFGTlvNLTKLNLDQNPLVVPPDEV 433
Cdd:PRK15370 329 TLEAGEN--ALTSLPASLPP--ELQVLDVSKNQITVLPETLPP--TITTLDVSRNALTNLPENL 386
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 209-430 4.54e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 71.80  E-value: 4.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  209 VDLSGRKL--KLLPEAFGkIQGLLVLNLYNNQLQA-IPDSIAGL-HNLLELDVSTNFLeTLPDSIGLLSKLKILNVSCNK 284
Cdd:PLN00113  74 IDLSGKNIsgKISSAIFR-LPYIQTINLSNNQLSGpIPDDIFTTsSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNM 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  285 LT-TLPDSICHCGSLVVLDASYNNLT-YLPTNIGfELVKLEKLLIHLNK-IRSLPTSIGEMRSLRYLDAHFNELNGlpns 361
Cdd:PLN00113 152 LSgEIPNDIGSFSSLKVLDLGGNVLVgKIPNSLT-NLTSLEFLTLASNQlVGQIPRELGQMKSLKWIYLGYNNLSG---- 226

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55733731  362 fglltnleylnlssnfsdlqDLPASFGDLISLQELDLS-NNQIHSLPDAFGTLVNLTKLNLDQNPLV--VPP 430
Cdd:PLN00113 227 --------------------EIPYEIGGLTSLNHLDLVyNNLTGPIPSSLGNLKNLQYLFLYQNKLSgpIPP 278
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
206-362 8.95e-13

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 70.88  E-value: 8.95e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  206 LDRVDLSGRKLKLLPEAFGkiQGLLVLNLYNNQLQAIPDSIAGlhNLLELDVSTNFLETLPDSigLLSKLKILNVSCNKL 285
Cdd:PRK15370 264 LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSLTALPET--LPPGLKTLEAGENAL 337

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55733731  286 TTLPDSIChcGSLVVLDASYNNLTYLPTNIGfelVKLEKLLIHLNKIRSLPTSIGEmrSLRYLDAHFNELNGLPNSF 362
Cdd:PRK15370 338 TSLPASLP--PELQVLDVSKNQITVLPETLP---PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLVRLPESL 407
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 219-426 6.11e-12

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 68.34  E-value: 6.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  219 LPEAFGKIQGLLVLNLYNNQLQA-IPDSIAGLHNLLELDVSTNFLET-LPDSIGLLSKLKILNVSCNKLT-TLPDSICHC 295
Cdd:PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGeIPEGLCSSGNLFKLILFSNSLEGeIPKSLGACRSLRRVRLQDNSFSgELPSEFTKL 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  296 GSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIR-SLPTSIGEMRsLRYLDAHFNELNG-LPNSFGLLTNLEYLNL 373
Cdd:PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFgGLPDSFGSKR-LENLDLSRNQFSGaVPRKLGSLSELMQLKL 506

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55733731  374 SSN--------------------FSDLQ---DLPASFGDLISLQELDLSNNQIH-SLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PLN00113 507 SENklsgeipdelssckklvsldLSHNQlsgQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGNVESLVQVNISHNHL 583
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 211-426 6.10e-11

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 62.11  E-value: 6.10e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 211 LSGRKLKLLpEAFGKIQGLLVLNLYNNQLQAIPDsIAGLHNLLELDVSTNFLETLpDSIGLLSKLKILNVSCNKLTTLpd 290
Cdd:cd21340   9 LNDKNITKI-DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRISVV-- 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 291 sichcgslvvldasyNNLTYLPtnigfelvKLEKLliHLNKIRSLPtsiGEM-----RSLRyldahfnelnglpnsfGLL 365
Cdd:cd21340  84 ---------------EGLENLT--------NLEEL--HIENQRLPP---GEKltfdpRSLA----------------ALS 119

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55733731 366 TNLEYLNLSSN-FSDLQDLpasfGDLISLQELDLSNNQIHSLPD---AFGTLVNLTKLNLDQNPL 426
Cdd:cd21340 120 NSLRVLNISGNnIDSLEPL----APLRNLEQLDASNNQISDLEElldLLSSWPSLRELDLTGNPV 180
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 204-407 1.61e-10

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 63.71  E-value: 1.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  204 NPLDRVDLSGRKLK-LLPEAFGKIQGLLVLNLYNNQLQA-------------------------IPDSiAGLHNLLELDV 257
Cdd:PLN00113 404 RSLRRVRLQDNSFSgELPSEFTKLPLVYFLDISNNNLQGrinsrkwdmpslqmlslarnkffggLPDS-FGSKRLENLDL 482

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  258 STN-FLETLPDSIGLLSKLKILNVSCNKLT-TLPDSICHCGSLVVLDASYNNLTylptnigfelvklekllihlnkiRSL 335
Cdd:PLN00113 483 SRNqFSGAVPRKLGSLSELMQLKLSENKLSgEIPDELSSCKKLVSLDLSHNQLS-----------------------GQI 539

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 55733731  336 PTSIGEMRSLRYLDAHFNELNGlpnsfglltnleylnlssnfsdlqDLPASFGDLISLQELDLSNNQIH-SLP 407
Cdd:PLN00113 540 PASFSEMPVLSQLDLSQNQLSG------------------------EIPKNLGNVESLVQVNISHNHLHgSLP 588
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
228-426 2.87e-09

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 59.79  E-value: 2.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  228 GLLVLNLYNNQLQAIPDSIAGLHnllELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSichcgsLVVLDASYNN 307
Cdd:PRK15387 283 GLCKLWIFGNQLTSLPVLPPGLQ---ELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSG------LQELSVSDNQ 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  308 LTYLPTnIGFELVKLEKLLIHLNKIRSLPTSIGEmrslryLDAHFNELNGLPNsfgLLTNLEYLNLSSNfsDLQDLPASF 387
Cdd:PRK15387 354 LASLPT-LPSELYKLWAYNNRLTSLPALPSGLKE------LIVSGNRLTSLPV---LPSELKELMVSGN--RLTSLPMLP 421

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 55733731  388 GDLISLQeldLSNNQIHSLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PRK15387 422 SGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPL 457
LRR_8 pfam13855
Leucine rich repeat;
366-426 4.27e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.53  E-value: 4.27e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 55733731   366 TNLEYLNLSSNFsdLQDL-PASFGDLISLQELDLSNNQIHSL-PDAFGTLVNLTKLNLDQNPL 426
Cdd:pfam13855   1 PNLRSLDLSNNR--LTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 358-426 3.02e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.36  E-value: 3.02e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  358 LPNSFGLLTNLEYLNLSSNFSDlQDLPASFGDLISLQELDLSNNQIH-SLPDAFGTLVNLTKLNLDQNPL 426
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSL 502
PLN03150 PLN03150
hypothetical protein; Provisional
 206-306 3.59e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 55.98  E-value: 3.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  206 LDRVDLSGRKLK-LLPEAFGKIQGLLVLNLYNNQLQ-AIPDSIAGLHNLLELDVSTNFLE-TLPDSIGLLSKLKILNVSC 282
Cdd:PLN03150 420 IDGLGLDNQGLRgFIPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNG 499

                         90       100
                 ....*....|....*....|....*
gi 55733731  283 NKLT-TLPDSIchcGSLVVLDASYN 306
Cdd:PLN03150 500 NSLSgRVPAAL---GGRLLHRASFN 521
PLN03150 PLN03150
hypothetical protein; Provisional
 310-388 1.61e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.05  E-value: 1.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  310 YLPTNIGfELVKLEKLLIHLNKIR-SLPTSIGEMRSLRYLDAHFNELNGL-PNSFGLLTNLEYLNLSSNFSDlQDLPASF 387
Cdd:PLN03150 433 FIPNDIS-KLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSiPESLGQLTSLRILNLNGNSLS-GRVPAAL 510


                 .
gi 55733731  388 G 388
Cdd:PLN03150 511 G 511
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
271-426 2.18e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.01  E-value: 2.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 271 LLSKLKILNVSCNKLTTLPDSICHCGSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDA 350
Cdd:COG4886   1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55733731 351 HFNELNGLPNSFGLLTNLEYLNLSSNfsdlqdlpASFGDLISLQELDLSNNQIHSLPDAFGTLVNLTKLNLDQNPL 426
Cdd:COG4886  81 LLSLLLLGLTDLGDLTNLTELDLSGN--------EELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQL 148
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
206-376 2.55e-07

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 53.24  E-value: 2.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  206 LDRVDLSGRKLKLLPEAFGKIQGLLVlnlYNNQLQAIPDSIAGLHnllELDVSTNFLETLPDSIGLLSKLKILNvscNKL 285
Cdd:PRK15387 304 LQELSVSDNQLASLPALPSELCKLWA---YNNQLTSLPTLPSGLQ---ELSVSDNQLASLPTLPSELYKLWAYN---NRL 374

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  286 TTLPDSICHCGSLVVLDASYNNLTYLPTnigfelvKLEKLLIHLNKIRSLPTSIGEMRSlryLDAHFNELNGLPNSFGLL 365
Cdd:PRK15387 375 TSLPALPSGLKELIVSGNRLTSLPVLPS-------ELKELMVSGNRLTSLPMLPSGLLS---LSVYRNQLTRLPESLIHL 444

                        170
                 ....*....|.
gi 55733731  366 TNLEYLNLSSN 376
Cdd:PRK15387 445 SSETTVNLEGN 455
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
196-315 7.96e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 51.62  E-value: 7.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  196 SILQQAAENPLDRVDLSGRKLKLLPEAFGkiQGLLVLNLYNNQLQAIPDSIAglHNLLELDVSTNFLETLPDSigLLSKL 275
Cdd:PRK15370 275 SCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPAS--LPPEL 348

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 55733731  276 KILNVSCNKLTTLPDS---------ICHC----------GSLVVLDASYNNLTYLPTNI 315
Cdd:PRK15370 349 QVLDVSKNQITVLPETlpptittldVSRNaltnlpenlpAALQIMQASRNNLVRLPESL 407
LRR_8 pfam13855
Leucine rich repeat;
251-308 1.81e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.51  E-value: 1.81e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731   251 NLLELDVSTNFLETLPDSIGL-LSKLKILNVSCNKLTTL-PDSICHCGSLVVLDASYNNL 308
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 232-363 1.85e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 47.50  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731  232 LNLYNNQLQA-IPDSIAGLHNLLELDVSTNFLE-TLPDSIGLLSklkilnvscnklttlpdsichcgSLVVLDASYNNLT 309
Cdd:PLN03150 423 LGLDNQGLRGfIPNDISKLRHLQSINLSGNSIRgNIPPSLGSIT-----------------------SLEVLDLSYNSFN 479

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 55733731  310 ylptnigfelvklekllihlnkiRSLPTSIGEMRSLRYLDAHFNELNG-LPNSFG 363
Cdd:PLN03150 480 -----------------------GSIPESLGQLTSLRILNLNGNSLSGrVPAALG 511
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
216-294 3.83e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 46.23  E-value: 3.83e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 55733731  216 LKLLPEAFGKiqGLLVLNLYNNQLQAIPDSIAGlhNLLELDVSTNFLETLPDSigLLSKLKILNVSCNKLTTLPDSICH 294
Cdd:PRK15370 337 LTSLPASLPP--ELQVLDVSKNQITVLPETLPP--TITTLDVSRNALTNLPEN--LPAALQIMQASRNNLVRLPESLPH 409
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 206-422 3.86e-05

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 46.41  E-value: 3.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731   206 LDRVDLSGRK-LKLLPEaFGKIQGLLVLNLYN-NQLQAIPDSIAGLHNLLELDVS-TNFLETLPDSIGLLSkLKILNVS- 281
Cdd:PLN03210  636 LRNIDLRGSKnLKEIPD-LSMATNLETLKLSDcSSLVELPSSIQYLNKLEDLDMSrCENLEILPTGINLKS-LYRLNLSg 713

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731   282 CNKLTTLPDSichCGSLVVLDASYNNLTYLPTNIG----FELVKLEKLLIHLNKIRSLPTSIGEMRS---LRYLDAHFNE 354
Cdd:PLN03210  714 CSRLKSFPDI---STNISWLDLDETAIEEFPSNLRlenlDELILCEMKSEKLWERVQPLTPLMTMLSpslTRLFLSDIPS 790

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 55733731   355 LNGLPNSFGLLTNLEYLNLsSNFSDLQDLPASFgDLISLQELDLSN-NQIHSLPDafgTLVNLTKLNLD 422
Cdd:PLN03210  791 LVELPSSIQNLHKLEHLEI-ENCINLETLPTGI-NLESLESLDLSGcSRLRTFPD---ISTNISDLNLS 854
LRR_8 pfam13855
Leucine rich repeat;
321-376 5.60e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.97  E-value: 5.60e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 55733731   321 KLEKLLIHLNKIRSL-PTSIGEMRSLRYLDAHFNELNGL-PNSFGLLTNLEYLNLSSN 376
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGN 59
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 392-427 4.54e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.00  E-value: 4.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 55733731   392 SLQELDLSNNQIHSLPdAFGTLVNLTKLNLDQNPLV 427
Cdd:pfam12799   2 NLEVLDLSNNQITDIP-PLAKLPNLETLDLSGNNKI 36
LRR_8 pfam13855
Leucine rich repeat;
227-285 7.23e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.89  E-value: 7.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 55733731   227 QGLLVLNLYNNQLQAI-PDSIAGLHNLLELDVSTNFLETL-PDSIGLLSKLKILNVSCNKL 285
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
206-260 1.43e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.12  E-value: 1.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 55733731   206 LDRVDLSGRKLKLL-PEAFGKIQGLLVLNLYNNQLQAI-PDSIAGLHNLLELDVSTN 260
Cdd:pfam13855   3 LRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
273-332 2.55e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 2.55e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 55733731   273 SKLKILNVSCNKLTTL-PDSICHCGSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKI 332
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 212-403 3.28e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 39.65  E-value: 3.28e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 212 SGRKLKLLPEAFGKIQGLLVLNLYNNQLQaiPDSIAGLHNLLeldvSTNFLETLPDSIGLLSKLKilnvscnkLTTLPDS 291
Cdd:cd00116  66 IPRGLQSLLQGLTKGCGLQELDLSDNALG--PDGCGVLESLL----RSSSLQELKLNNNGLGDRG--------LRLLAKG 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 292 ICHCG-SLVVLDASYNNLTY---------LPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELN----- 356
Cdd:cd00116 132 LKDLPpALEKLVLGRNRLEGascealakaLRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTdegas 211

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 55733731 357 GLPNSFGLLTNLEYLNLSSNFSDLQDL----PASFGDLISLQELDLSNNQI 403
Cdd:cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAaalaSALLSPNISLLTLSLSCNDI 262
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
206-384 4.01e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.53  E-value: 4.01e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 206 LDRVDLSGRKLKLLPEAFGKIQGLLVLNLYNNQLQAIPD---------------------SIAGLHNLLELDVSTNFLET 264
Cdd:COG4886 207 LEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPElgnltnleeldlsnnqltdlpPLANLTNLKTLDLSNNQLTD 286

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 265 LPDSIGLLSKLKILNVSCNKLTTLPDSICHCGSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRS 344
Cdd:COG4886 287 LKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLL 366

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 55733731 345 LRYLDAHFNELNGLPNSFGLLTNLEYLNLSSNFSDLQDLP 384
Cdd:COG4886 367 LTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLA 406
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 207-426 4.79e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 39.26  E-value: 4.79e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 207 DRVDLSGRKLKLLPEA--FGKIQGLLVLNLYNNQLQ-----AIPDSIAGLHNLLELDVSTNFLETLPDSIG-LLSKLKil 278
Cdd:cd00116   1 LQLSLKGELLKTERATelLPKLLCLQVLRLEGNTLGeeaakALASALRPQPSLKELCLSLNETGRIPRGLQsLLQGLT-- 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 279 nvSCNKLTTLpdSICHCGSLVVLDASYNNLTYLPTnigfelvkLEKLLIHLNKI--RSLPTSIGEMRS----LRYLDAHF 352
Cdd:cd00116  79 --KGCGLQEL--DLSDNALGPDGCGVLESLLRSSS--------LQELKLNNNGLgdRGLRLLAKGLKDlppaLEKLVLGR 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731 353 NELNG-----LPNSFGLLTNLEYLNLSSNfsDLQD-----LPASFGDLISLQELDLSNNQIHS-----LPDAFGTLVNLT 417
Cdd:cd00116 147 NRLEGasceaLAKALRANRDLKELNLANN--GIGDagiraLAEGLKANCNLEVLDLNNNGLTDegasaLAETLASLKSLE 224


                ....*....
gi 55733731 418 KLNLDQNPL 426
Cdd:cd00116 225 VLNLGDNNL 233
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 202-429 6.23e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 39.47  E-value: 6.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731   202 AENPLDRVDLSGRKLKLLPEAFGKiqgllvLNLYNNQ-LQAIPDSIAGLHNLLELDVS--TNfLETLPDSIGLLSkLKIL 278
Cdd:PLN03210  759 SEKLWERVQPLTPLMTMLSPSLTR------LFLSDIPsLVELPSSIQNLHKLEHLEIEncIN-LETLPTGINLES-LESL 830

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55733731   279 NVS-CNKLTTLPDsichcgslvvldasynnltyLPTNIgfelvklEKLLIHLNKIRSLPTSIGEMRSLRYLDahfneLNG 357
Cdd:PLN03210  831 DLSgCSRLRTFPD--------------------ISTNI-------SDLNLSRTGIEEVPWWIEKFSNLSFLD-----MNG 878

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55733731   358 LPNSFGLLTNLEYLN--LSSNFSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFG-TLVNLtkLNLDQNPLVVP 429
Cdd:PLN03210  879 CNNLQRVSLNISKLKhlETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCiNFINC--FNLDQEALLQQ 951
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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