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Conserved domains on  [gi|52697600|gb|AAU86537|]
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lysine-specific permease, partial [Shigella boydii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10836 super family cl30114
lysine transporter; Provisional
 1-199 1.02e-133

lysine transporter; Provisional


The actual alignment was detected with superfamily member PRK10836:

Pssm-ID: 182767  Cd Length: 489  Bit Score: 383.40  E-value: 1.02e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:PRK10836  16 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:PRK10836  96 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGV 175

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 52697600  161 MMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:PRK10836 176 LMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIV 214
 
Name Accession Description Interval E-value
PRK10836 PRK10836
lysine transporter; Provisional
 1-199 1.02e-133

lysine transporter; Provisional


Pssm-ID: 182767  Cd Length: 489  Bit Score: 383.40  E-value: 1.02e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:PRK10836  16 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:PRK10836  96 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGV 175

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 52697600  161 MMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:PRK10836 176 LMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIV 214
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
1-199 6.25e-114

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 332.52  E-value: 6.25e-114
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:COG0833  13 GLKSRHLSMIALGGVIGTGLFLASGYTISQAGPGGALLAYLLGGLMVYFLMTSLGELAVAMPVSGSFQTYATRFIDPAFG 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600  81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:COG0833  93 FAVGWNYWLNWAITVAAELTAAGIIMQYWFPDVPVWIWSLLFLALIFLLNALSVKAFGESEFWFSLIKVITVIAFIIVGL 172

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 52697600 161 MMIIGIFKGaQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:COG0833 173 LMIFGIIGG-HAPGFSNFTTGDGPFPGGFLAILGVMMIV 210
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 1-165 1.17e-49

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 167.46  E-value: 1.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPV-SGSFATYGQNYVEEGF 79
Cdd:TIGR00913   3 SLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVvSGSFATYASRFVDPAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    80 GFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVG 159
Cdd:TIGR00913  83 GFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILS 162


                  ....*.
gi 52697600   160 VMMIIG 165
Cdd:TIGR00913 163 IILNCG 168
AA_permease pfam00324
Amino acid permease;
6-199 1.76e-43

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 150.93  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     6 HLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGW 85
Cdd:pfam00324   1 HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFATGW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    86 NYWYNWAVTIAVDLVAAQLVMSWW--FPDTPG-WIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVMM 162
Cdd:pfam00324  81 NYWLSWITVLALELTAASILIQFWelVPDIPYlWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIIL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 52697600   163 IIGiFKGAQPAGWSNWT--IGEAPFAGGFA-AMIGVAMIV 199
Cdd:pfam00324 161 LSG-GNPNDGAIFRYLGdnGGKNNFPPGFGkGFISVFVIA 199
 
Name Accession Description Interval E-value
PRK10836 PRK10836
lysine transporter; Provisional
 1-199 1.02e-133

lysine transporter; Provisional


Pssm-ID: 182767  Cd Length: 489  Bit Score: 383.40  E-value: 1.02e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:PRK10836  16 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:PRK10836  96 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGV 175

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 52697600  161 MMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:PRK10836 176 LMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIV 214
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
1-199 6.25e-114

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 332.52  E-value: 6.25e-114
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:COG0833  13 GLKSRHLSMIALGGVIGTGLFLASGYTISQAGPGGALLAYLLGGLMVYFLMTSLGELAVAMPVSGSFQTYATRFIDPAFG 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600  81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:COG0833  93 FAVGWNYWLNWAITVAAELTAAGIIMQYWFPDVPVWIWSLLFLALIFLLNALSVKAFGESEFWFSLIKVITVIAFIIVGL 172

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 52697600 161 MMIIGIFKGaQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:COG0833 173 LMIFGIIGG-HAPGFSNFTTGDGPFPGGFLAILGVMMIV 210
AnsP COG1113
L-asparagine transporter or related permease [Amino acid transport and metabolism];
2-199 4.22e-70

L-asparagine transporter or related permease [Amino acid transport and metabolism];


Pssm-ID: 440730 [Multi-domain]  Cd Length: 458  Bit Score: 219.99  E-value: 4.22e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:COG1113  17 LKNRHIQMIALGGAIGTGLFLGSGKAIALAGPA-VLLSYLIAGLIVFLVMRALGEMAVANPVSGSFSDYAREYLGPWAGF 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600  82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:COG1113  96 VTGWLYWFFWVLVGMAEATAVGIYLQFWFPDVPQWVWALVFLVLLTAINLLSVKLFGEFEFWFALIKVVAIVAFIVVGLL 175

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 52697600 162 MIIGIFK--GAQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:COG1113 176 LIFFGFGlpGGPPAGLSNLWDHGGFFPNGIGGVLAALQIV 215
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 1-165 1.17e-49

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 167.46  E-value: 1.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPV-SGSFATYGQNYVEEGF 79
Cdd:TIGR00913   3 SLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVvSGSFATYASRFVDPAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    80 GFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVG 159
Cdd:TIGR00913  83 GFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILS 162


                  ....*.
gi 52697600   160 VMMIIG 165
Cdd:TIGR00913 163 IILNCG 168
PRK11387 PRK11387
S-methylmethionine permease;
2-166 6.94e-44

S-methylmethionine permease;


Pssm-ID: 236904  Cd Length: 471  Bit Score: 151.93  E-value: 6.94e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK11387  16 MKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK11387  96 TVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGA 175


                 ....*
gi 52697600  162 MIIGI 166
Cdd:PRK11387 176 AIFGF 180
AA_permease pfam00324
Amino acid permease;
6-199 1.76e-43

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 150.93  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     6 HLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGW 85
Cdd:pfam00324   1 HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFATGW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    86 NYWYNWAVTIAVDLVAAQLVMSWW--FPDTPG-WIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVMM 162
Cdd:pfam00324  81 NYWLSWITVLALELTAASILIQFWelVPDIPYlWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIIL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 52697600   163 IIGiFKGAQPAGWSNWT--IGEAPFAGGFA-AMIGVAMIV 199
Cdd:pfam00324 161 LSG-GNPNDGAIFRYLGdnGGKNNFPPGFGkGFISVFVIA 199
PRK10746 PRK10746
putative transport protein YifK; Provisional
 2-199 3.33e-39

putative transport protein YifK; Provisional


Pssm-ID: 182694  Cd Length: 461  Bit Score: 139.57  E-value: 3.33e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK10746  12 LEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGY 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK10746  91 LTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLG 170

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 52697600  162 MII-GIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIV 199
Cdd:PRK10746 171 VIFfGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIV 209
PRK10249 PRK10249
phenylalanine transporter; Provisional
 2-193 1.12e-37

phenylalanine transporter; Provisional


Pssm-ID: 236667  Cd Length: 458  Bit Score: 135.11  E-value: 1.12e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK10249  23 LHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGF 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK10249 102 LSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLW 181

                        170       180       190
                 ....*....|....*....|....*....|..
gi 52697600  162 MIIGiFKGAQPAGWSNWTIGEAPFAGGFAAMI 193
Cdd:PRK10249 182 LLFS-GHGGEKASIDNLWRYGGFFATGWNGLI 212
PRK11049 PRK11049
D-alanine/D-serine/glycine permease; Provisional
 2-174 6.77e-36

D-alanine/D-serine/glycine permease; Provisional


Pssm-ID: 236830  Cd Length: 469  Bit Score: 130.62  E-value: 6.77e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK11049  22 LTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS-IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK11049 101 FTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLV 180

                        170
                 ....*....|...
gi 52697600  162 MIIGIFKgaQPAG 174
Cdd:PRK11049 181 MVAMHFQ--SPTG 191
proY PRK10580
putative proline-specific permease; Provisional
 2-193 2.08e-34

putative proline-specific permease; Provisional


Pssm-ID: 182566 [Multi-domain]  Cd Length: 457  Bit Score: 126.47  E-value: 2.08e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK10580  11 LSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGY 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK10580  90 ITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIG 169

                        170       180       190
                 ....*....|....*....|....*....|...
gi 52697600  162 MII-GIFKGAQPAGWSNWTIGEAPFAGGFAAMI 193
Cdd:PRK10580 170 IIIwGIGNGGQPTGIHNLWSNGGFFSNGWLGMV 202
PRK10238 PRK10238
aromatic amino acid transporter AroP;
2-181 3.92e-34

aromatic amino acid transporter AroP;


Pssm-ID: 182324 [Multi-domain]  Cd Length: 456  Bit Score: 125.84  E-value: 3.92e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    2 LKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGF 81
Cdd:PRK10238  14 LKNRHIQLIALGGAIGTGLFLGSASVIQSAGPG-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   82 ALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVM 161
Cdd:PRK10238  93 ASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGW 172

                        170       180
                 ....*....|....*....|
gi 52697600  162 MIIGIFKGAQPAGWSNWTIG 181
Cdd:PRK10238 173 LLFSGNGGPQATVSNLWDQG 192
PRK15049 PRK15049
L-asparagine permease;
5-163 2.46e-32

L-asparagine permease;


Pssm-ID: 185009  Cd Length: 499  Bit Score: 121.27  E-value: 2.46e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    5 RHLTMIAIGGSIGTGLFVASGATISQAGPGGALLsYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALG 84
Cdd:PRK15049  33 RQVQMIAIGGAIGTGLFLGAGARLQMAGPALALV-YLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAG 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   85 WNYWYNWAVTIAVDLVAAQLVMSWW--FPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVMM 162
Cdd:PRK15049 112 WMYFINWAMTGIVDITAVALYMHYWgaFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVF 191


                 .
gi 52697600  163 I 163
Cdd:PRK15049 192 L 192
PRK10197 PRK10197
GABA permease;
9-198 6.95e-26

GABA permease;


Pssm-ID: 182297  Cd Length: 446  Bit Score: 103.16  E-value: 6.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    9 MIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYW 88
Cdd:PRK10197   1 MLSIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   89 YNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVMMIIGIFK 168
Cdd:PRK10197  80 WFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYP 159

                        170       180       190
                 ....*....|....*....|....*....|
gi 52697600  169 GAQPAGWSNWTIGEAPFAGGFAAMIGVAMI 198
Cdd:PRK10197 160 YAEVSGISRLWDSGGFMPNGFGAVLSAMLI 189
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-199 3.70e-17

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 78.40  E-value: 3.70e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   1 ELKARHLTMIAIGGSIGTGLFVASGATISQAGPGgALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFG 80
Cdd:COG0531  12 KLGLFDLVALGVGAIIGAGIFVLPGLAAGLAGPA-AILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRALGPLLG 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600  81 FALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGV 160
Cdd:COG0531  91 FLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSVLIALVLILLLTLLNLRGVKESAKVNNILTVLKLLVLLLFIVVGL 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 52697600 161 MMIIG-IFKGAQPAGWSNWTIGEApFAGGFAAMIGVAMIV 199
Cdd:COG0531 171 FAFDPaNFTPFLPAGGGLSGVLAA-LALAFFAFTGFEAIA 209
AA_permease_2 pfam13520
Amino acid permease;
7-195 1.07e-07

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 50.77  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     7 LTMIAIGGSIGTGLFVASGAtisqAGPGGALLSYILIGLMVYFLMTSL--GELAAYMPVSGSFATYGQNYVEEGFGFALG 84
Cdd:pfam13520   6 AFALVIGSVIGSGIFVAPLV----ASGGPALIVWGWIAAIIFSLAVGLvyAELSSALPRSGGIYVYLENAFGKFVAFLAG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    85 WNYWYNWAVTIA-VDLVAAQLVMSWWFPDTPGWIW-----SALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVV 158
Cdd:pfam13520  82 WSNWFAYVLGLAsSASVAASYLLSALGPDLVPTTWltygiAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIII 161

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 52697600   159 gVMMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGV 195
Cdd:pfam13520 162 -LGLVTADGGGFNLLSGEWHTFFPDGWPGVFAGFLGV 197
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 7-189 1.22e-04

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 42.11  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600     7 LTMIAIGGSIGTGLFVASGATI-SQAGPgGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGW 85
Cdd:TIGR00906  35 LMALGIGSTIGAGIYVLTGEVArNDSGP-AIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    86 NYWYNW-----AVTIAVDLVAAQLV---MSWWFPDTPGWIWSALFL-------GIIFLLNYISVRGFGEAEyWFSliKVA 150
Cdd:TIGR00906 114 NLILEYvigtaAVARSWSAYFDELLnkqIGQFRRTYFKLNYDGLAEypdffavCLILLLAVLLSFGVKESA-WVN--KIF 190

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 52697600   151 TVIIFIVVGVMMIIGIFKGaqpaGWSNWTIGEAPFAGGF 189
Cdd:TIGR00906 191 TAINILVLLFVIIAGFTKA----DVANWSITEEKGAGGF 225
frlA PRK11357
amino acid permease;
10-193 2.06e-04

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 41.38  E-value: 2.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   10 IAIGGSIGTGLFVASGATISQAG-PGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGW-NY 87
Cdd:PRK11357  18 IAVGTTVGSGIFVSVGEVAKAAGtPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWaSF 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600   88 WYNWAVTIAVDLVAAQLVMSWWFPDTP--GWIWSALFLGIIFLLNYISVRGFGEAEYWFSLIKVATVIIFIVVGVMMIIG 165
Cdd:PRK11357  98 WANDAPSLSIMALAIVSNLGFLTPIDPllGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKA 177

                        170       180
                 ....*....|....*....|....*...
gi 52697600  166 IFKGAQPagwsnwtIGEAPFAGGFAAMI 193
Cdd:PRK11357 178 ENFAAPT-------TTAIGATGSFMALL 198
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 10-165 2.23e-04

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 41.27  E-value: 2.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    10 IAIGGSIGTGLFVASGATISQAG-PGGALLSYILIGLMVYFLMTSLGELAAYMPVSGSfatyGQNYVEEGFGFALGW-NY 87
Cdd:TIGR00911  52 IIVGTIIGSGIFVSPKGVLKNAGsVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYILEVFGPLLAFlRL 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52697600    88 WYNWAV-----TIAVDLVAAQLVMSWWFPDTPGWIWSALFLGII-----FLLNYISVRGFGEAEYWFSLIKVATVIIFIV 157
Cdd:TIGR00911 128 WIELLVirpgsQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLcvlllTLVNCLSVKWATRVQDIFTACKLLALLLIII 207


                  ....*...
gi 52697600   158 VGVMMIIG 165
Cdd:TIGR00911 208 TGWVQLGK 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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