SEPALLATA2 [Arabidopsis thaliana]
MADS-box domain-containing protein( domain architecture ID 10083661)
MADS-box domain-containing protein with a K-box coiled-coil region; the MADS-box domain (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor) is a conserved DNA-binding/dimerization region present in a variety of transcription factors from three eukaryotic kingdoms, plants, animals, and fungi
List of domain hits
Name | Accession | Description | Interval | E-value | |||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-77 | 2.89e-45 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. : Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 146.16 E-value: 2.89e-45
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K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
84-173 | 8.45e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. : Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 109.47 E-value: 8.45e-31
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Name | Accession | Description | Interval | E-value | |||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-77 | 2.89e-45 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 146.16 E-value: 2.89e-45
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MADS | smart00432 | MADS domain; |
2-60 | 5.05e-36 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 121.90 E-value: 5.05e-36
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K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
84-173 | 8.45e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 109.47 E-value: 8.45e-31
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 2.23e-28 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 102.12 E-value: 2.23e-28
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-68 | 1.49e-12 | |||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 66.58 E-value: 1.49e-12
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Name | Accession | Description | Interval | E-value | |||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-77 | 2.89e-45 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 146.16 E-value: 2.89e-45
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MADS | smart00432 | MADS domain; |
2-60 | 5.05e-36 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 121.90 E-value: 5.05e-36
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MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-60 | 7.63e-34 | |||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 116.46 E-value: 7.63e-34
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K-box | pfam01486 | K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
84-173 | 8.45e-31 | |||
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 109.47 E-value: 8.45e-31
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 2.23e-28 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 102.12 E-value: 2.23e-28
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MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
2-70 | 2.32e-28 | |||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 103.11 E-value: 2.32e-28
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-68 | 1.49e-12 | |||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 66.58 E-value: 1.49e-12
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Blast search parameters | ||||
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