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Conserved domains on  [gi|41394045|gb|AAS02269|]
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ATPase 8, partial (mitochondrion) [Geopelia cuneata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP8 super family cl03008
ATP synthase F0 subunit 8; Provisional
 1-53 1.48e-09

ATP synthase F0 subunit 8; Provisional


The actual alignment was detected with superfamily member MTH00133:

Pssm-ID: 470718  Cd Length: 55  Bit Score: 47.56  E-value: 1.48e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKVLAHTFPNEPTPQSTEKPKTEPWNWP 53
 
Name Accession Description Interval E-value
ATP8 MTH00133
ATP synthase F0 subunit 8; Provisional
 1-53 1.48e-09

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177191  Cd Length: 55  Bit Score: 47.56  E-value: 1.48e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKVLAHTFPNEPTPQSTEKPKTEPWNWP 53
ATP-synt_8 pfam00895
ATP synthase protein 8;
1-53 1.09e-04

ATP synthase protein 8;


Pssm-ID: 459986  Cd Length: 54  Bit Score: 35.01  E-value: 1.09e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 41394045    1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:pfam00895  1 MPQLNTSTWFTTILLMWLTLFILFQLKLSSHTPTNPPPKSLKTTKHPNPWEWK 53
 
Name Accession Description Interval E-value
ATP8 MTH00133
ATP synthase F0 subunit 8; Provisional
 1-53 1.48e-09

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177191  Cd Length: 55  Bit Score: 47.56  E-value: 1.48e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKVLAHTFPNEPTPQSTEKPKTEPWNWP 53
ATP8 MTH00123
ATP synthase F0 subunit 8; Provisional
 1-53 4.48e-08

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 214426  Cd Length: 54  Bit Score: 43.72  E-value: 4.48e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSnKTPAATKTTPWSWP 53
Cdd:MTH00123  1 MPQLNPAPWFLIMLLTWLTLILIIQPKILSFTPTNNPT-KTNTTTNTTPWTWP 52
ATP8 MTH00171
ATP synthase F0 subunit 8; Provisional
 1-53 1.93e-05

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177225  Cd Length: 54  Bit Score: 36.95  E-value: 1.93e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:MTH00171  1 MPQLNPIPWFFIFLFSWLIFLTLLPNKITKHIFTNKPSPNQTEKPKPNEWNWP 53
ATP-synt_8 pfam00895
ATP synthase protein 8;
1-53 1.09e-04

ATP synthase protein 8;


Pssm-ID: 459986  Cd Length: 54  Bit Score: 35.01  E-value: 1.09e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 41394045    1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTPAATKTTPWSWP 53
Cdd:pfam00895  1 MPQLNTSTWFTTILLMWLTLFILFQLKLSSHTPTNPPPKSLKTTKHPNPWEWK 53
ATP8 MTH00072
ATP synthase F0 subunit 8; Provisional
 1-53 4.79e-04

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 164642  Cd Length: 54  Bit Score: 33.41  E-value: 4.79e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 41394045   1 MPQL*PNPWFLTM*LSWLTFSL*IQP**LSFISTNYPSNKTpAATKTTPWSWP 53
Cdd:MTH00072  1 MPQLNPGPWFAIFLMSWLIFLLILPFKISNHKNLNEPTSQN-KKNKPESWNWP 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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