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Conserved domains on  [gi|38000080|gb|AAR07123|]
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NdhC, partial (chloroplast) [Alepidocline annua]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-77 1.75e-50

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member CHL00022:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 120  Bit Score: 153.99  E-value: 1.75e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:CHL00022  44 YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-77 1.75e-50

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 153.99  E-value: 1.75e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:CHL00022  44 YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
1-75 1.85e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 112.52  E-value: 1.85e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALE 75
Cdd:pfam00507 20 YECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-76 7.06e-32

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 106.74  E-value: 7.06e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080   1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:COG0838  42 YECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-77 1.75e-50

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 153.99  E-value: 1.75e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:CHL00022  44 YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-77 1.35e-34

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 113.81  E-value: 1.35e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:PRK06602  45 YESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
1-75 1.85e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 112.52  E-value: 1.85e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALE 75
Cdd:pfam00507 20 YECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-76 7.06e-32

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 106.74  E-value: 7.06e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080   1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:COG0838  42 YECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-76 3.68e-30

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 102.51  E-value: 3.68e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:PRK07756  46 YESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-76 2.46e-20

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 77.78  E-value: 2.46e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAwLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:PRK08489  51 YECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-76 4.80e-20

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 77.02  E-value: 4.80e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAW--LQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:PRK07928  41 YECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-76 2.53e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 59.41  E-value: 2.53e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVF-VEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00161  37 FECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-77 5.30e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 58.72  E-value: 5.30e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF-DVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:MTH00148  39 FECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLgSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-76 1.21e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 57.70  E-value: 1.21e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLGVSVFVEALIFVLiLIVGLVYAWRKGALEW 76
Cdd:MTH00069  36 YECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTPTNTLFWSTLILIL-LTLGLIYEWIQGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 1-76 1.64e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 57.64  E-value: 1.64e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00030  47 YECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-76 4.15e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 56.53  E-value: 4.15e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00042  38 YECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpPATLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-76 4.71e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 56.26  E-value: 4.71e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00055  42 YECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-77 7.17e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 55.72  E-value: 7.17e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLGVSVFVeALIFVLILIVGLVYAWRKGALEWS 77
Cdd:MTH00106  37 YECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTMLTM-ALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-77 1.32e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 55.25  E-value: 1.32e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 77
Cdd:MTH00012  39 FECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-76 1.78e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 54.68  E-value: 1.78e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00018  37 YECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-76 2.20e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 54.50  E-value: 2.20e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLgVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00113  37 YECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-TTTLTWATIILTLLTLGLIYEWLQGGLEW 113
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 17-76 1.71e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 52.89  E-value: 1.71e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 38000080   17 IRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:PRK06432  83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-76 4.60e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 51.15  E-value: 4.60e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMS-FDVLGVSVFVEALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00202  39 FECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-76 8.67e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 50.69  E-value: 8.67e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLGVSVFVEALIFVLiLIVGLVYAWRKGALEW 76
Cdd:MTH00136  38 YECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWGDQLPSPLLTFFWATAVLIL-LTLGLIYEWLQGGLEW 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-76 6.93e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 47.97  E-value: 6.93e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38000080    1 YESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVeALIFVLILIVGLVYAWRKGALEW 76
Cdd:MTH00203  38 YECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLL-AFLFLILLTLGLIYEWLQGGLEW 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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