NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|37907491|gb|AAP41211|]
View 

spatial protein, partial [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SPATIAL super family cl21114
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 64-127 2.65e-31

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


The actual alignment was detected with superfamily member pfam15256:

Pssm-ID: 464596  Cd Length: 201  Bit Score: 110.16  E-value: 2.65e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37907491    64 FFSRHHPQPQRVTHIQDIAGKPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGIPQSNR*P 127
Cdd:pfam15256   1 FFSRHNPHPHRVTHIKGLNGIPICTVNDDENAFPPPFKSQLSSSLMGVPQISHPIGDPQSNRVP 64
 
Name Accession Description Interval E-value
SPATIAL pfam15256
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 64-127 2.65e-31

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


Pssm-ID: 464596  Cd Length: 201  Bit Score: 110.16  E-value: 2.65e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37907491    64 FFSRHHPQPQRVTHIQDIAGKPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGIPQSNR*P 127
Cdd:pfam15256   1 FFSRHNPHPHRVTHIKGLNGIPICTVNDDENAFPPPFKSQLSSSLMGVPQISHPIGDPQSNRVP 64
 
Name Accession Description Interval E-value
SPATIAL pfam15256
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 64-127 2.65e-31

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


Pssm-ID: 464596  Cd Length: 201  Bit Score: 110.16  E-value: 2.65e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37907491    64 FFSRHHPQPQRVTHIQDIAGKPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGIPQSNR*P 127
Cdd:pfam15256   1 FFSRHNPHPHRVTHIKGLNGIPICTVNDDENAFPPPFKSQLSSSLMGVPQISHPIGDPQSNRVP 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH