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Conserved domains on  [gi|30387842|gb|AAP32040|]
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ribosomal protein L37 [Rattus sp.]

Protein Classification

60S ribosomal protein L37( domain architecture ID 10015186)

60S ribosomal protein L37 binds to the 23S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-88 1.05e-31

60S ribosomal protein L37; Provisional


:

Pssm-ID: 240257  Cd Length: 91  Bit Score: 106.40  E-value: 1.05e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387842   1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....*...
gi 30387842  81 GTTPKPKR 88
Cdd:PTZ00073 81 GTKAKPKV 88
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-88 1.05e-31

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 106.40  E-value: 1.05e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387842   1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....*...
gi 30387842  81 GTTPKPKR 88
Cdd:PTZ00073 81 GTKAKPKV 88
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 2-54 2.32e-22

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 81.47  E-value: 2.32e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30387842    2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAK 54
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 9.92e-11

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 52.26  E-value: 9.92e-11
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 30387842  1 MTKGTSSFGKR-RNKTHTLCRRCGSKAYHLQKSTCGKCGY-PAKRKRKYNWS 50
Cdd:COG2126  1 MSKGTPSMGKRnKGKTHIRCRRCGRNSYNVRKKYCASCGFgKSKRIRSYSWQ 52
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-88 1.05e-31

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 106.40  E-value: 1.05e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387842   1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....*...
gi 30387842  81 GTTPKPKR 88
Cdd:PTZ00073 81 GTKAKPKV 88
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 2-54 2.32e-22

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 81.47  E-value: 2.32e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30387842    2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAK 54
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 9.92e-11

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 52.26  E-value: 9.92e-11
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 30387842  1 MTKGTSSFGKR-RNKTHTLCRRCGSKAYHLQKSTCGKCGY-PAKRKRKYNWS 50
Cdd:COG2126  1 MSKGTPSMGKRnKGKTHIRCRRCGRNSYNVRKKYCASCGFgKSKRIRSYSWQ 52
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 1-56 8.42e-09

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 47.32  E-value: 8.42e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 30387842   1 MTKGTSSFGKR-RNKTHTLCRRCGSKAYHLQKSTCGKCGY-PAKRKRKYNWSAKAKRR 56
Cdd:PRK04179  1 MSKGTPSMGKRnKGKTHIRCRRCGRHSYNVRKKYCAACGFgRSKRIRRYSWQNKKVNG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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