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Conserved domains on  [gi|37955682|gb|AAP22521|]
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Ssb (plasmid) [Pseudomonas aeruginosa]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 10793021)

single-stranded DNA (ssDNA)-binding protein may play a key role in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 1-149 2.07e-79

single-stranded DNA-binding protein; Provisional


:

Pssm-ID: 169261  Cd Length: 148  Bit Score: 231.88  E-value: 2.07e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    1 MATPVFWEGNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKV 80
Cdd:PRK08182   1 MSTHFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37955682   81 EGRAIMDRWPDKESGEEVqALKVEASRISILPHRLAEVTLLPSTNGQSTQHQQSRQVPPQPAQQDAHSQ 149
Cdd:PRK08182  81 EGRMERDEWTDNEDNERV-TFKVEARRVGILPYRIESVTLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
 
Name Accession Description Interval E-value
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 1-149 2.07e-79

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 231.88  E-value: 2.07e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    1 MATPVFWEGNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKV 80
Cdd:PRK08182   1 MSTHFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37955682   81 EGRAIMDRWPDKESGEEVqALKVEASRISILPHRLAEVTLLPSTNGQSTQHQQSRQVPPQPAQQDAHSQ 149
Cdd:PRK08182  81 EGRMERDEWTDNEDNERV-TFKVEARRVGILPYRIESVTLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-111 2.08e-21

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 83.05  E-value: 2.08e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   5 VFWEGNIGSAPEHRSFPNGnnppRQLLRLNVMFDNSIPDGqgGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRA 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSG----TPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRL 74

                        90       100
                ....*....|....*....|....*..
gi 37955682  85 IMDRWPDKEsGEEVQALKVEASRISIL 111
Cdd:cd04496  75 RTRSWEDKD-GQKRYGTEVVADRIEFL 100
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
5-114 9.64e-18

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 74.11  E-value: 9.64e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   5 VFWEGNIGSAPEHRSFPNGnnppRQLLRLNVMFDNSIPDGQGGYKDRGgFWCSVEWWHQDAQRFAELFAKGMRVKVEGRA 84
Cdd:COG0629   4 VTLVGRLGKDPELRYTPSG----TAVANFRLAVNRRYKDQDGEWKDET-DWHRVVAWGKLAENAAEYLKKGDKVYVEGRL 78

                        90       100       110
                ....*....|....*....|....*....|
gi 37955682  85 IMDRWPDKEsGEEVQALKVEASRISILPHR 114
Cdd:COG0629  79 RTRSWEDKD-GQKRYTTEVVADEIQFLGSR 107
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-161 2.13e-11

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 58.58  E-value: 2.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682     1 MATPVFWEGNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQdAQRFAELFAKGMRVKV 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGN----AVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRL-AEVAAQYLKKGSLVYV 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    81 EGRAIMDRWPDKEsGEEVQALKVEASRISIL-----PHRLAEVTLLPSTNGQSTQHQQSRQVPPQPAQQD-AHSQQDYDS 154
Cdd:TIGR00621  78 EGRLRTRKWEDQN-GQKRSKTEIIADNVQLLdllgaRAQGGEFSGGGGSGNRPQGGQEQSATGKDPAQSApQSGSADPID 156


                  ....*..
gi 37955682   155 AFDDDIP 161
Cdd:TIGR00621 157 GDDDEIP 163
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 5-111 2.46e-08

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 49.16  E-value: 2.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682     5 VFWEGNIGSAPEHRSFPNGNNpprqLLRLNVMFDNSipdgqggYKDRGGF-----WCSVEWWHQDAQRFAELFAKGMRVK 79
Cdd:pfam00436   4 VILVGRLTRDPELRYTPNGNA----VANFTLATNRR-------FKDRGEGdeetdFHRVVVFGKLAEVAAQYLKKGSLVY 72

                          90       100       110
                  ....*....|....*....|....*....|..
gi 37955682    80 VEGRAIMDRWPDKEsGEEVQALKVEASRISIL 111
Cdd:pfam00436  73 VEGRLQTRKYEDQE-GQKRYVTEIVADEVQFL 103
 
Name Accession Description Interval E-value
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 1-149 2.07e-79

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 231.88  E-value: 2.07e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    1 MATPVFWEGNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKV 80
Cdd:PRK08182   1 MSTHFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37955682   81 EGRAIMDRWPDKESGEEVqALKVEASRISILPHRLAEVTLLPSTNGQSTQHQQSRQVPPQPAQQDAHSQ 149
Cdd:PRK08182  81 EGRMERDEWTDNEDNERV-TFKVEARRVGILPYRIESVTLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-111 2.08e-21

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 83.05  E-value: 2.08e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   5 VFWEGNIGSAPEHRSFPNGnnppRQLLRLNVMFDNSIPDGqgGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRA 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSG----TPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRL 74

                        90       100
                ....*....|....*....|....*..
gi 37955682  85 IMDRWPDKEsGEEVQALKVEASRISIL 111
Cdd:cd04496  75 RTRSWEDKD-GQKRYGTEVVADRIEFL 100
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
5-114 9.64e-18

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 74.11  E-value: 9.64e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   5 VFWEGNIGSAPEHRSFPNGnnppRQLLRLNVMFDNSIPDGQGGYKDRGgFWCSVEWWHQDAQRFAELFAKGMRVKVEGRA 84
Cdd:COG0629   4 VTLVGRLGKDPELRYTPSG----TAVANFRLAVNRRYKDQDGEWKDET-DWHRVVAWGKLAENAAEYLKKGDKVYVEGRL 78

                        90       100       110
                ....*....|....*....|....*....|
gi 37955682  85 IMDRWPDKEsGEEVQALKVEASRISILPHR 114
Cdd:COG0629  79 RTRSWEDKD-GQKRYTTEVVADEIQFLGSR 107
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-161 2.13e-11

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 58.58  E-value: 2.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682     1 MATPVFWEGNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQdAQRFAELFAKGMRVKV 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGN----AVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRL-AEVAAQYLKKGSLVYV 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    81 EGRAIMDRWPDKEsGEEVQALKVEASRISIL-----PHRLAEVTLLPSTNGQSTQHQQSRQVPPQPAQQD-AHSQQDYDS 154
Cdd:TIGR00621  78 EGRLRTRKWEDQN-GQKRSKTEIIADNVQLLdllgaRAQGGEFSGGGGSGNRPQGGQEQSATGKDPAQSApQSGSADPID 156


                  ....*..
gi 37955682   155 AFDDDIP 161
Cdd:TIGR00621 157 GDDDEIP 163
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 5-111 2.46e-08

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 49.16  E-value: 2.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682     5 VFWEGNIGSAPEHRSFPNGNNpprqLLRLNVMFDNSipdgqggYKDRGGF-----WCSVEWWHQDAQRFAELFAKGMRVK 79
Cdd:pfam00436   4 VILVGRLTRDPELRYTPNGNA----VANFTLATNRR-------FKDRGEGdeetdFHRVVVFGKLAEVAAQYLKKGSLVY 72

                          90       100       110
                  ....*....|....*....|....*....|..
gi 37955682    80 VEGRAIMDRWPDKEsGEEVQALKVEASRISIL 111
Cdd:pfam00436  73 VEGRLQTRKYEDQE-GQKRYVTEIVADEVQFL 103
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 9-161 5.32e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 49.54  E-value: 5.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRAIMDR 88
Cdd:PRK05733  12 GTCGQDPEVRYLPNGN----AVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTRE 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   89 WP----DKESGEEVQALKVEASRISILPHRLAEVTLLPSTNGQSTQHQQS--------RQVPPQPAQQDAHSQQDYDSaF 156
Cdd:PRK05733  88 WEkdgiKRYTTEIVVDMQGTMQLLGGRPQGDDQGGQGGGNYNQSAPRQQAqrpqqaaqQQSRPAPQQPAPQPAADFDS-F 166


                 ....*
gi 37955682  157 DDDIP 161
Cdd:PRK05733 167 DDDIP 171
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 9-161 5.09e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 46.88  E-value: 5.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRAIMDR 88
Cdd:PRK06863  11 GHLGNDPEIRTMPNGE----AVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRK 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   89 WPDkESGEEVQALKVEASRISILPHR-------LAEVTLLPSTNGQSTQHQQSRQVPP-QPAQQDAHSQQDYD-SAFDDD 159
Cdd:PRK06863  87 WQD-QNGQDRYTTEIQGDVLQMLGGRnqrnaggYGNSGPAPQQSYQAGQTNNGNSQQAsRPAPQQAAPQAEPPmDGFDDD 165


                 ..
gi 37955682  160 IP 161
Cdd:PRK06863 166 IP 167
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 9-161 8.54e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 43.57  E-value: 8.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRAIMDR 88
Cdd:PRK13732  13 GRLGKDPEVRYIPNGG----AVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   89 WPDKESGEEVQALKVEAS----RISILPHRLAEVTLLPSTNGQSTQHQQSR--------------QVPPQPAQQDAhsqQ 150
Cdd:PRK13732  89 WEDNGITRYVTEILVKTTgtmqMLGRAPQQNAQPQPGPQQNGQPQSADATKkggaktkgrgrkaaQPEPQPQPPEG---E 165

                        170
                 ....*....|.
gi 37955682  151 DYDsaFDDDIP 161
Cdd:PRK13732 166 DYG--FSDDIP 174
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 9-111 5.80e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 40.44  E-value: 5.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDgqggykdrggfWCSVEWWHQDAQRFAELFAKGMRVKVEGRAIMDR 88
Cdd:PRK07459  10 GRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPD-----------WFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDR 78

                         90       100
                 ....*....|....*....|...
gi 37955682   89 WPDKESGEEVQALKVEASRISIL 111
Cdd:PRK07459  79 WTDRNTGEDRSKPVIRVDRLELL 101
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 9-83 9.35e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 38.09  E-value: 9.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGN--------NPPRqllrlnvMFD---NSIPDGQGGYkdrggFWCSVewWHQDAQRFAELFAKGMR 77
Cdd:PRK07772  11 GNLTADPELRFTPSGAavanftvaSTPR-------TFDrqtNEWKDGEALF-----LRCSI--WRQAAENVAESLTKGMR 76


                 ....*.
gi 37955682   78 VKVEGR 83
Cdd:PRK07772  77 VIVTGR 82
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 9-161 7.15e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 35.21  E-value: 7.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682    9 GNIGSAPEHRSFPNGNnpprQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFAKGMRVKVEGRAIMDR 88
Cdd:PRK09010  13 GNLGQDPEVRYMPNGG----AVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37955682   89 WPDkESGEEVQALKVEAS---RISILPHRLAEVTLLPSTNG----------QSTQHQQSRQVPPQPAQQDAHSQQDYDSA 155
Cdd:PRK09010  89 WTD-QSGQDRYTTEVVVNvggTMQMLGGRQGGGAPAGGNIGgqqqggwgqpQQPQGGNQFSGGAQSRPQQSAPAAPSNEP 167


                 ....*....
gi 37955682  156 ---FDDDIP 161
Cdd:PRK09010 168 pmdFDDDIP 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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