selenoprotein W2b [Danio rerio]
SelT/SelW/SelH family protein( domain architecture ID 10020357)
SelT/SelW/SelH family protein is a selenoprotein that possesses a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function
List of domain hits
Name | Accession | Description | Interval | E-value | ||
CXXU_selWTH | TIGR02174 | selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and ... |
5-75 | 1.26e-29 | ||
selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. : Pssm-ID: 274013 Cd Length: 73 Bit Score: 100.43 E-value: 1.26e-29
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Name | Accession | Description | Interval | E-value | ||
CXXU_selWTH | TIGR02174 | selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and ... |
5-75 | 1.26e-29 | ||
selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Pssm-ID: 274013 Cd Length: 73 Bit Score: 100.43 E-value: 1.26e-29
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Rdx | pfam10262 | Rdx family; This entry is an approximately 100 residue region of selenoprotein-T, conserved ... |
4-73 | 2.95e-20 | ||
Rdx family; This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium. Pssm-ID: 463032 Cd Length: 74 Bit Score: 76.80 E-value: 2.95e-20
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SelTWH_Campy | NF041051 | SelT/SelW/SelH family (seleno)protein, Campylobacterial type; Members of this family are ... |
5-73 | 1.79e-13 | ||
SelT/SelW/SelH family (seleno)protein, Campylobacterial type; Members of this family are primarily (perhaps exclusively) selenoproteins, found in Campylobacter species such as C. lari, but also in members of several other lineages. The protein family is related to SelT, SelW, and SelH, and features a CXXU motif. Pssm-ID: 468979 Cd Length: 70 Bit Score: 59.59 E-value: 1.79e-13
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COG3526 | COG3526 | Predicted selenoprotein, Rdx family [General function prediction only]; |
4-73 | 7.66e-10 | ||
Predicted selenoprotein, Rdx family [General function prediction only]; Pssm-ID: 442748 Cd Length: 93 Bit Score: 50.59 E-value: 7.66e-10
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Name | Accession | Description | Interval | E-value | ||
CXXU_selWTH | TIGR02174 | selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and ... |
5-75 | 1.26e-29 | ||
selT/selW/selH selenoprotein domain; This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Pssm-ID: 274013 Cd Length: 73 Bit Score: 100.43 E-value: 1.26e-29
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Rdx | pfam10262 | Rdx family; This entry is an approximately 100 residue region of selenoprotein-T, conserved ... |
4-73 | 2.95e-20 | ||
Rdx family; This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium. Pssm-ID: 463032 Cd Length: 74 Bit Score: 76.80 E-value: 2.95e-20
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SelTWH_Campy | NF041051 | SelT/SelW/SelH family (seleno)protein, Campylobacterial type; Members of this family are ... |
5-73 | 1.79e-13 | ||
SelT/SelW/SelH family (seleno)protein, Campylobacterial type; Members of this family are primarily (perhaps exclusively) selenoproteins, found in Campylobacter species such as C. lari, but also in members of several other lineages. The protein family is related to SelT, SelW, and SelH, and features a CXXU motif. Pssm-ID: 468979 Cd Length: 70 Bit Score: 59.59 E-value: 1.79e-13
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COG3526 | COG3526 | Predicted selenoprotein, Rdx family [General function prediction only]; |
4-73 | 7.66e-10 | ||
Predicted selenoprotein, Rdx family [General function prediction only]; Pssm-ID: 442748 Cd Length: 93 Bit Score: 50.59 E-value: 7.66e-10
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Blast search parameters | ||||
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