|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-651 |
2.72e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 2.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 212 KTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRL 291
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 292 CIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHL 371
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 372 IQ---------DAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGD 442
Cdd:COG1196 406 EEaeeallerlERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 443 YRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINS--SEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQEN 520
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 521 EQLQKET--EDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEET--K 596
Cdd:COG1196 566 LKAAKAGraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLagR 645
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 24637031 597 KLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRL 651
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-537 |
1.83e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 214 VTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCI 293
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 294 AIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEA---ISRARDSMQLLEEANIKQNQILLEEK----QKEVEREKMKK 366
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELeaqIEQLKEELKALREALDELRAELTLLNeeaaNLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 367 TIshliqDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKL 446
Cdd:TIGR02168 832 RI-----AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 447 E----EMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESEREncgfvseqrlKLQQENEQ 522
Cdd:TIGR02168 907 EskrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE----------EARRRLKR 976
|
330
....*....|....*
gi 24637031 523 LQKETEDLRKVALEA 537
Cdd:TIGR02168 977 LENKIKELGPVNLAA 991
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
59-643 |
2.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 59 LIAEYEKHLEELNRQ----LTYYQKHMGEMKLQLETVITENERLHSKLkDAVEKQLEALpfgtgiGNDICADDETVRNLQ 134
Cdd:COG1196 194 ILGELERQLEPLERQaekaERYRELKEELKELEAELLLLKLRELEAEL-EELEAELEEL------EAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 135 EQLQIANQEKnwavqlwQTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTV 214
Cdd:COG1196 267 AELEELRLEL-------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 215 TEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIA 294
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 295 IQEANvlktgktQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQD 374
Cdd:COG1196 420 EEELE-------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 375 AAIKARKEVESTKKQYEVLILQLKeelsalqmdcdEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCL 454
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLL-----------AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 455 AAERSKDDLQLRLKT-AENRIKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLkLQQENEQLQKETEDLRKV 533
Cdd:COG1196 562 AIEYLKAAKAGRATFlPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL-LGRTLVAARLEAALRRAV 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 534 ALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSEL 613
Cdd:COG1196 641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
570 580 590
....*....|....*....|....*....|
gi 24637031 614 SRQKLHTQELLSQLEMANEKVAENEKLILE 643
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEE 750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
128-651 |
2.10e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 128 ETVRNLQEQLQIANQEKNwavqlwqtaSQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTN 207
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERN---------NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 208 HHFLKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQL 287
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 288 ESRlCIAIQEANVLKTGKTQLEKQIKELQAKcsESENEKYEAISRARDSMQLLEEANIKQNQillEEKQKEVEREKMKKT 367
Cdd:PTZ00121 1384 KKK-AEEKKKADEAKKKAEEDKKKADELKKA--AAAKKKADEAKKKAEEKKKADEAKKKAEE---AKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 368 ISHLIQDAAIKARKEVESTKKQYEvlilqlKEELSALQMDCDEKQGQIDRAirgkRAVEEELEKIYREGKQDEGdyRKLE 447
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEE------AKKADEAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEA--KKAD 1525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 448 EMHQrclAAERSKDDlqlRLKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQE---NEQLQ 524
Cdd:PTZ00121 1526 EAKK---AEEAKKAD---EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEariEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 525 KETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRhllAAQQKTANRWKEETKKLTESAEM 604
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK---KAEEENKIKAAEEAKKAEEDKKK 1676
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 24637031 605 RISSLKSELSRQKlhTQELLSQLEMANEKVAENEKLILEHQEKANRL 651
Cdd:PTZ00121 1677 AEEAKKAEEDEKK--AAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-536 |
5.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 5.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 128 ETVRNLQEQLQIANQEKNWAVQLWQTASQELESVQKLYQEhmteaqihvfENRKQKDQLNNFQQLTKKLhvanENIEMTN 207
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----------LSRQISALRKDLARLEAEV----EQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 208 HHFLKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQL 287
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 288 ESRLCIAIQEANVLKTGKTQLEKQIkelqakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEkqKEVEREKMKKT 367
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDI---------------ESLAAEIEELEELIEELESELEALLNE--RASLEEALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 368 ISHLiqDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRaIRGKRAVEEELEkiyregkqdegdyrkLE 447
Cdd:TIGR02168 893 RSEL--EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-LQERLSEEYSLT---------------LE 954
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 448 EMHQRCLAAERSKDDLQLRLKTAENRIKQL-EIN--SSEEisrshemiqklqtvLESERENCGFVSEQRLKLQQENEQLQ 524
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLENKIKELgPVNlaAIEE--------------YEELKERYDFLTAQKEDLTEAKETLE 1020
|
410
....*....|..
gi 24637031 525 KETEDLRKVALE 536
Cdd:TIGR02168 1021 EAIEEIDREARE 1032
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-649 |
5.72e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 5.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 152 QTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENiEMTNHHFLKTVTEQNMEIEKLRKQLRQA 231
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE-AKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 232 KldlrvavTKVEELTKVTEGLQ--EQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLE 309
Cdd:PTZ00121 1404 K-------KKADELKKAAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 310 KQIKElqAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQ 389
Cdd:PTZ00121 1477 KKAEE--AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 390 YEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVE---EELEKIYREGKQDEGDYRKLEE-----MHQRCLAAERSKD 461
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKKAEeakikAEELKKAEEEKKK 1634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 462 DLQLRLKTAENRIKQLEINSSEEISRSHEmiQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKA 541
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKA--AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 542 KLKVSTMEHQFSIKEHGFEV-QLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKlht 620
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED--- 1789
|
490 500
....*....|....*....|....*....
gi 24637031 621 QELLSQLEMANEKVAENEKLILEHQEKAN 649
Cdd:PTZ00121 1790 EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-572 |
1.01e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 271 EASDRRVQQLQSSIKQLESRLciaiqeanvlktgkTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQI 350
Cdd:TIGR02168 235 EELREELEELQEELKEAEEEL--------------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 351 lleEKQKEVEREKMKKtiSHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRairgKRAVEEELE 430
Cdd:TIGR02168 301 ---EQQKQILRERLAN--LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE----LEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 431 KIYREGKQdegdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQKLQTV-LESERENCGFV 509
Cdd:TIGR02168 372 SRLEELEE------QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEEL 445
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24637031 510 SEQRLKLQQENEQLQKETEDLRKvALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRN 572
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELRE-ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-360 |
1.09e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 59 LIAEYEKHLEELNRQ----LTYYQKHMGEMKLQLETVITENERLHSKLkDAVEKQLEALpfgtgigNDICAD-DETVRNL 133
Cdd:TIGR02168 194 ILNELERQLKSLERQaekaERYKELKAELRELELALLVLRLEELREEL-EELQEELKEA-------EEELEElTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 134 QEQLQIANQEKNwavqlwqTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKT 213
Cdd:TIGR02168 266 EEKLEELRLEVS-------ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 214 VTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCI 293
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24637031 294 AIQEANVLktGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVE 360
Cdd:TIGR02168 419 LQQEIEEL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-650 |
2.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 354 EKQKEVEReKMKKTISHL--IQDAAIKARKEVESTKKQYEVLI--LQLKEELSALQ-----MDCDEKQGQIDRAIRGKRA 424
Cdd:TIGR02168 172 ERRKETER-KLERTRENLdrLEDILNELERQLKSLERQAEKAEryKELKAELRELElallvLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 425 VEEELEKIYREGKQDEGdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEinsseeisrshEMIQKLQTVLESERE 504
Cdd:TIGR02168 251 AEEELEELTAELQELEE---KLEELRLEVSELEEEIEELQKELYALANEISRLE-----------QQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 505 NCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQ----------KKAKLKVSTMEHQFSIKEHGFE------VQLREMED 568
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKeelesleaelEELEAELEELESRLEELEEQLEtlrskvAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 569 SNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEmriSSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKA 648
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
|
..
gi 24637031 649 NR 650
Cdd:TIGR02168 474 EQ 475
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-518 |
3.32e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 21 QHQIEHIFRDPAMQNSMSKGGRGDTLTNSVNDQSALPPLIAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHS 100
Cdd:pfam15921 298 QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 101 KLKD------------AVEKQLEALPFGTGIGNDICAD----DETVRNLQ-------------------EQLQIANQEKN 145
Cdd:pfam15921 378 QLQKlladlhkrekelSLEKEQNKRLWDRDTGNSITIDhlrrELDDRNMEvqrleallkamksecqgqmERQMAAIQGKN 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 146 WAVQLWQTASQELESVQKLYQEHMTE--AQIHVFENRKQkdqlnNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEK 223
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEEltAKKMTLESSER-----TVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 224 LR------KQLRQAKLDLRVAVTKVEELTKVTEGLQEQMlkkeEDIMSAQGKEeasDRRVQQLQSSIKQLESRLCIAIQE 297
Cdd:pfam15921 533 LQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQI----ENMTQLVGQH---GRTAGAMQVEKAQLEKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 298 ANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAI 377
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 378 KArKEVESTKKQYEVLILQLKEELS---------------------ALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREG 436
Cdd:pfam15921 686 KS-EEMETTTNKLKMQLKSAQSELEqtrntlksmegsdghamkvamGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 437 KQDEGDYRKLEEmHQRCLAAERSKDDLQLR-LKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESEREncgfvSEQRLK 515
Cdd:pfam15921 765 HFLKEEKNKLSQ-ELSTVATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ-----ESVRLK 838
|
...
gi 24637031 516 LQQ 518
Cdd:pfam15921 839 LQH 841
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
194-639 |
3.40e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 194 KKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRQakldLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEAS 273
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPE----LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 274 DRRVQQLQSSIKQLESRL------CIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQ 347
Cdd:PRK03918 258 EEKIRELEERIEELKKEIeeleekVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 348 NQI-LLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVL----ILQLKEELSALQMDCDEKQGQIDRAIRGK 422
Cdd:PRK03918 338 ERLeELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 423 RAVEEELEKIYREGKQDEGDY----RKLEEMHQRCLAAERSKD--DLQLRLKTAENRIKQL---------EINSSEEISR 487
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLrkelrelekVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 488 SHEMIQKLQTVLES-ERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKL--KVSTMEHQFSIKEHGFEVQLR 564
Cdd:PRK03918 498 LKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELkkKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24637031 565 EMEDSNRNSIVELRHLLAAQQKTANRWKE--ETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEK 639
Cdd:PRK03918 578 ELEELGFESVEELEERLKELEPFYNEYLElkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
60-530 |
5.68e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 5.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 60 IAEYEK---HLEELNRQLTYYQKHMGemKLQLETVITENERLHSKLK---------DAVEKQLEALPFGTGIGNDICADD 127
Cdd:TIGR01612 1199 IAEIEKdktSLEEVKGINLSYGKNLG--KLFLEKIDEEKKKSEHMIKameayiedlDEIKEKSPEIENEMGIEMDIKAEM 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 128 ETV---RNLQEQLQIANQE--------KNWAVQLWQTASQE--LESVQKLYQEHMTEAQIH----------------VFE 178
Cdd:TIGR01612 1277 ETFnisHDDDKDHHIISKKhdenisdiREKSLKIIEDFSEEsdINDIKKELQKNLLDAQKHnsdinlylneianiynILK 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 179 NRKQKDQLNNFQQLTKKLHVANENI--EMTNHHFLKTVTEQNMEIEKLRkqlrqAKLDLRVAVTKVEELTKVTEGLQEQM 256
Cdd:TIGR01612 1357 LNKIKKIIDEVKEYTKEIEENNKNIkdELDKSEKLIKKIKDDINLEECK-----SKIESTLDDKDIDECIKKIKELKNHI 1431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 257 LKKEEDIMSAQGKEEASDRRVQQLQSSIKQLE--SRLCIAIQEANvlktGKTQLEKQIKELQAKCSESENEKYEAISRAR 334
Cdd:TIGR01612 1432 LSEESNIDTYFKNADENNENVLLLFKNIEMADnkSQHILKIKKDN----ATNDHDFNINELKEHIDKSKGCKDEADKNAK 1507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 335 dsmqlleeaNIKQNQILLEEKQKEVerekmkktISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQ 414
Cdd:TIGR01612 1508 ---------AIEKNKELFEQYKKDV--------TELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQK 1570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 415 IDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSK---DDLQLRLKTAENRIKQLEINSSE-EISRSHE 490
Cdd:TIGR01612 1571 IKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETESIEKKISSFSIDSQDtELKENGD 1650
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 24637031 491 MIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 530
Cdd:TIGR01612 1651 NLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDV 1690
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
276-633 |
1.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 276 RVQQLQSSIKQLESRLCIAIQEanvlktgKTQLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQIL--LE 353
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSE-------LRRIENRLDELSQELSDASRK----IGEIEKEIEQLEQEEEKLKERLeeLE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 354 EKQKEVEREKmkktishliqDAAIKARKEVESTKKQYEVLILQLKEELSAL-QMDCDEKQGQIDRAIRGKRAVEEELEKI 432
Cdd:TIGR02169 744 EDLSSLEQEI----------ENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 433 YREGKQdegdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEinssEEISRSHEMIQKLQTVLESERENCGFVSEQ 512
Cdd:TIGR02169 814 LREIEQ------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 513 RLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEvQLREMEDSNRN--SIVELRHLLAAQQKTANR 590
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE-ELSEIEDPKGEdeEIPEEELSLEDVQAELQR 962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 24637031 591 WKEETKKLT----------ESAEMRISSLKSELSRQKLHTQELLSQLEMANEK 633
Cdd:TIGR02169 963 VEEEIRALEpvnmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
211-639 |
1.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 211 LKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 290
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 291 LCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEA----------ISRARDSMQLLEE-ANIKQNQILLEEKQKEV 359
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahneeAESLREDADDLEErAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 360 EREKMKKTISHL--IQDAAIKARKEVESTKKQYEVLiLQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGK 437
Cdd:PRK02224 375 AREAVEDRREEIeeLEEEIEELRERFGDAPVDLGNA-EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 438 --------QDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLE--INSSEEISRSHEMIQKLQTVLESERENCG 507
Cdd:PRK02224 454 cpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 508 FVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKlkvstmEHQFSIKEhgFEVQLREMEDS--NRNSIVELRHLLAAQQ 585
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAE------EAREEVAE--LNSKLAELKERieSLERIRTLLAAIADAE 605
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 24637031 586 KTANRWKEETKKLTESAEMRISSLKSELSRqklhTQELLSQLEMANEKVAENEK 639
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLAEKRER----KRELEAEFDEARIEEAREDK 655
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
323-540 |
1.55e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 323 ENEKYEAISRARDSMQLLEEAnikQNQILLEEKQKEV---------EREKMKKTISHLIQDAAiKARKEVESTKkqyevl 393
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA---HEALEDAREQIELlepirelaeRYAAARERLAELEYLRA-ALRLWFAQRR------ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 394 ILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDyrKLEEMHQRCLAAERSKDDLQLRLKTAENR 473
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--RLEQLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24637031 474 IKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKV--ALEAQKK 540
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERRKS 436
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
60-431 |
2.39e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 60 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVIT-----ENERLHSKLKDAVEKQLEALPfGTGIGNDICADDETVRNLQ 134
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQqlerlRREREKAERYQALLKEKREYE-GYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 135 EQLQIANQEKNWAVQLWQTASQELESVQKLYQEhmTEAQIhvfeNRKQKDQLNNFQQLTKKLHVANENIEmtnhhflKTV 214
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKI----KDLGEEEQLRVKEKIGELEAEIASLE-------RSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 215 TEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQqlqssikQLESRLCIA 294
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE-------EVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 295 IQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQD 374
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 375 AAiKARKEVESTKKQYEvlilQLKEELSALQMDCDEK---QGQIDRAIRGKRAVEEELEK 431
Cdd:TIGR02169 464 LS-KYEQELYDLKEEYD----RVEKELSKLQRELAEAeaqARASEERVRGGRAVEEVLKA 518
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
244-600 |
2.62e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 244 ELTKVTEGLQEQmlkKEEDIMSAQGKEEASDRRVQQLQSSIKQLEsrlciaiQEANVLKTGKTQLEKQIKELQAKCSESE 323
Cdd:pfam07888 45 ELLQAQEAANRQ---REKEKERYKRDREQWERQRRELESRVAELK-------EELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 324 NEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTishliQDAAIKARKEVESTKKQYEVLILQLKEELSA 403
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKER-----AKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 404 LQMDCDEKQGQIDRAIRGKRAVEEELEKIyregkqdegdYRKLEEMHQRCLAAERSKDDL---QLRLKTAENRIKQLEIN 480
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTL----------TQKLTTAHRKEAENEALLEELrslQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 481 SSEEIS-RSHEMIQKLQTVLESERENcGFVSEQRLKLQQENEQLQKETEDLRKVA-LEAQKKAKLKVSTMEHQFSIKEH- 557
Cdd:pfam07888 260 LSSMAAqRDRTQAELHQARLQAAQLT-LQLADASLALREGRARWAQERETLQQSAeADKDRIEKLSAELQRLEERLQEEr 338
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 24637031 558 ----GFEVQLREMEDSNR-------NSIVELRHLLAAQQKTANRWKEETKKLTE 600
Cdd:pfam07888 339 mereKLEVELGREKDCNRvqlsesrRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-651 |
2.83e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 60 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHSKLKDAVEKQLEALpfgtgigNDICADDETVRNLQEQLQI 139
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-------QDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 140 ANQEKnwavqlwqtasQELESVQKLYQEHMTEAQIHVFENRKQKDQL-NNFQQLTKKLHVANENIEmtnhhflktvtEQN 218
Cdd:COG1196 321 LEEEL-----------AELEEELEELEEELEELEEELEEAEEELEEAeAELAEAEEALLEAEAELA-----------EAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 219 MEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEA 298
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 299 NVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAnikqnqillEEKQKEVEREKMKKTISHLIQDAAIK 378
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY---------EGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 379 ARKEVESTKKQYEVLILQLKEELSALQMDcDEKQGQIDRAIRGKRAVEEELEKIyrEGKQDEGDYRKLEEMHQRCLAAER 458
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEV-AAAAIEYLKAAKAGRATFLPLDKI--RARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 459 SKDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQ 538
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 539 KKAklkvstmehqfsikehgfevQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKL 618
Cdd:COG1196 687 RLA--------------------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590
....*....|....*....|....*....|...
gi 24637031 619 HTQELLSQLEMANEKVAENEKLILEHQEKANRL 651
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
220-435 |
3.15e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 220 EIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRlciaiqean 299
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE--------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 300 vLKTGKTQLEKQIKELQAKCSESENE---KYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAA 376
Cdd:COG4942 99 -LEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24637031 377 iKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYRE 435
Cdd:COG4942 178 -ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
178-488 |
4.38e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 178 ENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQML 257
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 258 KKEEDI-----MSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISR 332
Cdd:TIGR02169 776 KLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 333 ARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQD--AAIKARKEVESTKKQYEVLILQLKEELSALQmdcdE 410
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQlrELERKIEELEAQIEKKRKRLSELKAKLEALE----E 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 411 KQGQIDRAIRGKRAVEEE---LEKIYREGKQDEGDYRKLEEMHQRCL----AAERSKDDLQLRLKTAENRIKQLE--INS 481
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIPEEelsLEDVQAELQRVEEEIRALEPVNMLAIqeyeEVLKRLDELKEKRAKLEEERKAILerIEE 1011
|
....*..
gi 24637031 482 SEEISRS 488
Cdd:TIGR02169 1012 YEKKKRE 1018
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
327-647 |
4.73e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 327 YEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQ-DAAIKARKEVESTKKQYEVLILQLKEELsALQ 405
Cdd:pfam17380 233 YEKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQhQKAVSERQQQEKFEKMEQERLRQEKEEK-ARE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 406 MdcdEKQGQIDRAIRGKRAVEEELEKIYREgkqdegdyrkleemhQRCLAAERSKDDLQLRLktaENRIKQLEINSSEEI 485
Cdd:pfam17380 312 V---ERRRKLEEAEKARQAEMDRQAAIYAE---------------QERMAMERERELERIRQ---EERKRELERIRQEEI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 486 SRSHEMIQKLQTvLESERencgfvseqrlklQQENEQLQKETEDLRKVAL---EAQKKAKLKVSTMEHQFSIKEHGFEVQ 562
Cdd:pfam17380 371 AMEISRMRELER-LQMER-------------QQKNERVRQELEAARKVKIleeERQRKIQQQKVEMEQIRAEQEEARQRE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 563 LREMED--------------SNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLE 628
Cdd:pfam17380 437 VRRLEEeraremervrleeqERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRK 516
|
330
....*....|....*....
gi 24637031 629 MANEKVAENEKLILEHQEK 647
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERR 535
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
220-428 |
9.25e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 220 EIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLciaIQEAN 299
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 300 VLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQ-LLEEanIKQNQILLEEKQKEVERekmKKTISHLIQDAAIK 378
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADAdLLEE--LKADKAELEAKKAELEA---KLAELEALKAELEA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 24637031 379 ARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEE 428
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-482 |
1.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 211 LKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVtEGLQEQMLKKEEDIMSAqgkeEASDRRVQQLQSSIKQLESR 290
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV-ASAEREIAELEAELERL----DASSDDLAALEEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 291 LCIAIQEANVLKTGKTQLEKQIKELQakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISH 370
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAE-----------EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 371 LIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDcdekqgqIDRAIRGKRAVEEELEKIyregkQDEGDYRKLEEMH 450
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPAETAD-------LDADLESLPEYLALLDRL-----EEDGLPEYEERFK 837
|
250 260 270
....*....|....*....|....*....|....*
gi 24637031 451 QRCL-AAERSKDDLQLRLKTAENRIKQ--LEINSS 482
Cdd:COG4913 838 ELLNeNSIEFVADLLSKLRRAIREIKEriDPLNDS 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
238-448 |
1.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 238 AVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQA 317
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 318 KCSESENE------KYEAISRARDSMQLLEEANIKQNQILLE-EKQKEVEREKMKKTISHLIQDAAiKARKEVESTKKQY 390
Cdd:COG4942 98 ELEAQKEElaellrALYRLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAEELRADLAELA-ALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24637031 391 EVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEE 448
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
236-453 |
1.97e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.17 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 236 RVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQ---- 311
Cdd:pfam05667 310 NEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQykvk 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 312 -------------IKELQAKCSESEN------EKYEAIsRARDSMQLLEEANIKQNQiLLEEKQKEVEREKMKKTISHLI 372
Cdd:pfam05667 390 kktldllpdaeenIAKLQALVDASAQrlvelaGQWEKH-RVPLIEEYRALKEAKSNK-EDESQRKLEEIKELREKIKEVA 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 373 QDAAIKAR------KEVESTKKQ-----YEVLILQL-------KEELSALQMDCDEKQGQIDRAI-RGKRAVEEELEKIY 433
Cdd:pfam05667 468 EEAKQKEElykqlvAEYERLPKDvsrsaYTRRILEIvknikkqKEEITKILSDTKSLQKEINSLTgKLDRTFTVTDELVF 547
|
250 260
....*....|....*....|...
gi 24637031 434 REGKQDEG---DYRKLEEMHQRC 453
Cdd:pfam05667 548 KDAKKDESvrkAYKYLAALHENC 570
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
234-530 |
3.59e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 234 DLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQgkEEASDRRVQ--QLQSSIKQLESRlCIAIQEA-NVLKTGKTQLE- 309
Cdd:COG3096 355 DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAE--EEVDSLKSQlaDYQQALDVQQTR-AIQYQQAvQALEKARALCGl 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 310 -----KQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQ--ILLEEKQKEVEREKMKKTISHLIQDAAikarkE 382
Cdd:COG3096 432 pdltpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayELVCKIAGEVERSQAWQTARELLRRYR-----S 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 383 VESTKKQYEVLILQLKE--ELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD-EGDYRKLEEMHQRCLAAERS 459
Cdd:COG3096 507 QQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQlEELEEQAAEAVEQRSELRQQ 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 460 KDDLQLRLK----------TAENRIKQLEINSSEEISRSHEMIQKLQTVLESEREncgfVSEQRLKLQQENEQLQKETED 529
Cdd:COG3096 587 LEQLRARIKelaarapawlAAQDALERLREQSGEALADSQEVTAAMQQLLERERE----ATVERDELAARKQALESQIER 662
|
.
gi 24637031 530 L 530
Cdd:COG3096 663 L 663
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
248-392 |
4.31e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 248 VTEGLQEQMLKKEEDimSAQGKEEASDRRVQQLQSSIKQLESRlciaIQEanvLKTGKTQLEKQIKELQAKCSESENEKY 327
Cdd:COG2433 381 ALEELIEKELPEEEP--EAEREKEHEERELTEEEEEIRRLEEQ----VER---LEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 328 EAISRARDSMQLLEEANIKQNQI-----LLEEKQKEVER-----EKMKKTISHLIQDAAIKA-------RKEVESTKKQY 390
Cdd:COG2433 452 EARSEERREIRKDREISRLDREIerlerELEEERERIEElkrklERLKELWKLEHSGELVPVkvvekftKEAIRRLEEEY 531
|
..
gi 24637031 391 EV 392
Cdd:COG2433 532 GL 533
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
178-553 |
4.33e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 178 ENRKQKDQLNNFQQLTKKLHVANENiEMTNHHFLKTVTEQNMEIEKLRKQLRQAKLDLRVAVTKVEELTKVTEGLQ---- 253
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmka 1609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 254 EQMLKKEEDIMSAQ--GKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAIS 331
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 332 RARDSMQLLEEAniKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEK 411
Cdd:PTZ00121 1690 AAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24637031 412 QGQIDRAIRGKRAVEEELEKiyREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLktaeNRIKQLEINSSEEISRSHEM 491
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDE--EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVI----NDSKEMEDSAIKEVADSKNM 1841
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24637031 492 IQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFS 553
Cdd:PTZ00121 1842 QLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| |
