NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|23093258|gb|AAN11712|]
View 

Golgin, RAB6 interacting [Drosophila melanogaster]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Transcrip_act super family cl04860
Transcriptional activator; This family of proteins may act as a transcriptional activator. It ...
 200-316 1.55e-03

Transcriptional activator; This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants.


The actual alignment was detected with superfamily member pfam04949:

Pssm-ID: 398553 [Multi-domain]  Cd Length: 154  Bit Score: 38.58  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23093258   200 RMIEEQNKQKKQMLYQAIEQHTQKTAAESRKIEEIRHELSKLESDLAVDVALLRKQIDNACIHFANVEKQYVKIEAQFlR 279
Cdd:pfam04949  32 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEALADPMRKEVAMVRKKIDAVNRELKPLGQSCQKKEKEY-K 110

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 23093258   280 AKIELHNASEK-KELLTEHLCTVIAHNEDRKAQKLTEL 316
Cdd:pfam04949 111 EALEAFNEKNKeKAQLVSKLMELVSESEKLRMKKLEEL 148
 
Name Accession Description Interval E-value
Transcrip_act pfam04949
Transcriptional activator; This family of proteins may act as a transcriptional activator. It ...
 200-316 1.55e-03

Transcriptional activator; This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants.


Pssm-ID: 398553 [Multi-domain]  Cd Length: 154  Bit Score: 38.58  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23093258   200 RMIEEQNKQKKQMLYQAIEQHTQKTAAESRKIEEIRHELSKLESDLAVDVALLRKQIDNACIHFANVEKQYVKIEAQFlR 279
Cdd:pfam04949  32 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEALADPMRKEVAMVRKKIDAVNRELKPLGQSCQKKEKEY-K 110

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 23093258   280 AKIELHNASEK-KELLTEHLCTVIAHNEDRKAQKLTEL 316
Cdd:pfam04949 111 EALEAFNEKNKeKAQLVSKLMELVSESEKLRMKKLEEL 148
 
Name Accession Description Interval E-value
Transcrip_act pfam04949
Transcriptional activator; This family of proteins may act as a transcriptional activator. It ...
 200-316 1.55e-03

Transcriptional activator; This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants.


Pssm-ID: 398553 [Multi-domain]  Cd Length: 154  Bit Score: 38.58  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23093258   200 RMIEEQNKQKKQMLYQAIEQHTQKTAAESRKIEEIRHELSKLESDLAVDVALLRKQIDNACIHFANVEKQYVKIEAQFlR 279
Cdd:pfam04949  32 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEALADPMRKEVAMVRKKIDAVNRELKPLGQSCQKKEKEY-K 110

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 23093258   280 AKIELHNASEK-KELLTEHLCTVIAHNEDRKAQKLTEL 316
Cdd:pfam04949 111 EALEAFNEKNKeKAQLVSKLMELVSESEKLRMKKLEEL 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH