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Conserved domains on  [gi|599125451|gb|AAN10909|]
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NADH dehydrogenase (ubiquinone) B17 subunit, isoform C [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NDUF_B6 super family cl10760
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
11-160 6.57e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


The actual alignment was detected with superfamily member pfam09782:

Pssm-ID: 462896  Cd Length: 126  Bit Score: 149.12  E-value: 6.57e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599125451   11 GVKPmviagrmvRERERLIGMspeeRAWRKQWLKDQELHH-GPRKVPalelELNNPIKRFYRAPLDKvcnvlEPVLGFQR 89
Cdd:pfam09782   1 GYTP--------DEKLRLEQL----RELRRQWLKDQELSPrEPVVVP----ERLNPIERFWRAFLDK-----KPLWGLYT 59
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 599125451   90 AYTVRFWTGKALLALTGIYAGAYYFKYNQNdwtrKGGWRVIHSRKQCVPGdegyPKVSDRS----APSDYAARGF 160
Cdd:pfam09782  60 AKAYRFGVFKLLMVLIPAWIVHYYFKYHVN----KKPYRIVSSKPRIFPG----DTILETGevipPPADYPARHH 126
 
Name Accession Description Interval E-value
NDUF_B6 pfam09782
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
11-160 6.57e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


Pssm-ID: 462896  Cd Length: 126  Bit Score: 149.12  E-value: 6.57e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599125451   11 GVKPmviagrmvRERERLIGMspeeRAWRKQWLKDQELHH-GPRKVPalelELNNPIKRFYRAPLDKvcnvlEPVLGFQR 89
Cdd:pfam09782   1 GYTP--------DEKLRLEQL----RELRRQWLKDQELSPrEPVVVP----ERLNPIERFWRAFLDK-----KPLWGLYT 59
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 599125451   90 AYTVRFWTGKALLALTGIYAGAYYFKYNQNdwtrKGGWRVIHSRKQCVPGdegyPKVSDRS----APSDYAARGF 160
Cdd:pfam09782  60 AKAYRFGVFKLLMVLIPAWIVHYYFKYHVN----KKPYRIVSSKPRIFPG----DTILETGevipPPADYPARHH 126
 
Name Accession Description Interval E-value
NDUF_B6 pfam09782
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
11-160 6.57e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


Pssm-ID: 462896  Cd Length: 126  Bit Score: 149.12  E-value: 6.57e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599125451   11 GVKPmviagrmvRERERLIGMspeeRAWRKQWLKDQELHH-GPRKVPalelELNNPIKRFYRAPLDKvcnvlEPVLGFQR 89
Cdd:pfam09782   1 GYTP--------DEKLRLEQL----RELRRQWLKDQELSPrEPVVVP----ERLNPIERFWRAFLDK-----KPLWGLYT 59
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 599125451   90 AYTVRFWTGKALLALTGIYAGAYYFKYNQNdwtrKGGWRVIHSRKQCVPGdegyPKVSDRS----APSDYAARGF 160
Cdd:pfam09782  60 AKAYRFGVFKLLMVLIPAWIVHYYFKYHVN----KKPYRIVSSKPRIFPG----DTILETGevipPPADYPARHH 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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