|
Name |
Accession |
Description |
Interval |
E-value |
| Methyltransf_29 |
pfam03141 |
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ... |
308-813 |
0e+00 |
|
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.
Pssm-ID: 335237 [Multi-domain] Cd Length: 506 Bit Score: 939.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 308 DYIPCLDNVQAIRSLPSTKHYEHRERHCPDS--PPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKV 385
Cdd:pfam03141 1 DYIPCLDNKRAIKFLLSRERMEHRERHCPPPeeKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 386 TGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALE 465
Cdd:pfam03141 81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 466 RGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQK-KTEDVEIWKAMSEL 544
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVYARtEEDLQEIWKEMEDL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 545 IKKMCWELVSINKDtingvgVATYRKPTSNECYKNRSE-PVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQ 623
Cdd:pfam03141 241 TKSLCWKLVAKKGD------IAIWQKPLNNSCYNKREPgKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWPEP 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 624 WPARLEKAPFWLSSSQtgvYGKAAPEDFSADYEHWKRVVTKSY-LNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVM 702
Cdd:pfam03141 315 WPARLTAVPPRLSSGQ---IGGVSPESFKADTELWKKRVNKYKrLLKLGIDWGKVRNVMDMNAGFGGFAAALIDLPVWVM 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 703 NVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAET 782
Cdd:pfam03141 392 NVVPVDSPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDSVDV 471
|
490 500 510
....*....|....*....|....*....|....*
gi 21928175 783 IQQVEGMVKAMKWEVRMTYSKE----KEGLLSVQK 813
Cdd:pfam03141 472 LDKVKKIAKAMRWEVRMTDTEDgphvPEKILIAQK 506
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
399-521 |
3.24e-09 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 56.16 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 399 FKHGALHYiDFIQESVPAIAWGKRSRVvLDVGCGVASFGGFLFDRDVITMSLapkDEHEAQVQFALERGIPA---ISAVM 475
Cdd:COG2226 1 FDRVAARY-DGREALLAALGLRPGARV-LDLGCGTGRLALALAERGARVTGV---DISPEMLELARERAAEAglnVEFVV 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 21928175 476 GT-TRLPFPGRVFDIVHCARcrVPWHIEG-GKLLLELNRVLRPGGFFV 521
Cdd:COG2226 76 GDaEDLPFPDGSFDLVISSF--VLHHLPDpERALAEIARVLKPGGRLV 121
|
|
| PRK08317 |
PRK08317 |
hypothetical protein; Provisional |
426-518 |
1.48e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 181382 [Multi-domain] Cd Length: 241 Bit Score: 47.24 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 426 VLDVGCGvasfGGFlfdrDVITMS--------LAPKDEHEAQVQFALER---GIPAISAVMG-TTRLPFPGRVFDIVhCA 493
Cdd:PRK08317 23 VLDVGCG----PGN----DARELArrvgpegrVVGIDRSEAMLALAKERaagLGPNVEFVRGdADGLPFPDGSFDAV-RS 93
|
90 100
....*....|....*....|....*.
gi 21928175 494 rCRVPWHIEG-GKLLLELNRVLRPGG 518
Cdd:PRK08317 94 -DRVLQHLEDpARALAEIARVLRPGG 118
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
125-292 |
8.35e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 46.53 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 125 SETKSETEGGEDQKDDSKS----------ENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNElgEDGENQKQFES 194
Cdd:TIGR00927 663 SGGEAEQEGETETKGENESegeipaerkgEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE--GEIETGEEGEE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 195 DNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFS 274
Cdd:TIGR00927 741 VEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSE 820
|
170 180
....*....|....*....|
gi 21928175 275 TQA--TESKNEKEAQKGSGD 292
Cdd:TIGR00927 821 TQAddTEVKDETGEQELNAE 840
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
50-295 |
1.10e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 50 DEVSLDNK----DGIKKQMTP--PAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKeektkeeftp 123
Cdd:NF033609 525 NEVAFNNGsgsgDGIDKPVVPeqPDEPGEIEPIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDS---------- 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 124 SSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNSDEEN-PDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSI 202
Cdd:NF033609 595 ASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSaSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 674
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 203 DDDKKSSDDDKENKTGNEDTETKTEKE---NTETNVDVQVEQEGQSKNETSGDlSPPGAQLELLNETTAQNGSFSTQATE 279
Cdd:NF033609 675 DSDSDSDSDSDSDSDSDSDSDSDSDSDsdsDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSD 753
|
250
....*....|....*.
gi 21928175 280 SKNEKEAQKGSGDKLD 295
Cdd:NF033609 754 SDSDSDSDSDSDSDSD 769
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
82-295 |
8.26e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 82 ETPNEDKKGDGDASLPKEDESSSKQDNQEEKkeektkeeftpsSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNS 161
Cdd:COG5271 527 DPEDSDEDALEDETEGEENAPGSDQDADETD------------EPEATAEEDEPDEAEAETEDATENADADETEESADES 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 162 DEENPDTNEKQTKPETEDNELGEDGENQkqfESDNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQ 241
Cdd:COG5271 595 EEAEASEDEAAEEEEADDDEADADADGA---ADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAED 671
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 21928175 242 EGQSKNETSG----DLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGSGDKLD 295
Cdd:COG5271 672 ESETSSEDAEedadAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAE 729
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
150-248 |
1.74e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.08 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 150 DLDEKK--DLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDK--ENKTGNEDTETK 225
Cdd:PTZ00341 418 DLEKQKymDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEivEEQSVNEHVEEP 497
|
90 100
....*....|....*....|....
gi 21928175 226 TEKENTET-NVDVQVEQEGQSKNE 248
Cdd:PTZ00341 498 TVADIVEQeTVDEHVEEPAVDENE 521
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
426-521 |
2.52e-03 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 38.18 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 426 VLDVGCGVasfGGFLF------DRDVITMSLAPKDEHEAQvQFALERGIPAISAVMG--TTRLPFPGRVFDIVHCARCRV 497
Cdd:cd02440 2 VLDLGCGT---GALALalasgpGARVTGVDISPVALELAR-KAAAALLADNVEVLKGdaEELPPEADESFDVIISDPPLH 77
|
90 100
....*....|....*....|....
gi 21928175 498 PWHIEGGKLLLELNRVLRPGGFFV 521
Cdd:cd02440 78 HLVEDLARFLEEARRLLKPGGVLV 101
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Methyltransf_29 |
pfam03141 |
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ... |
308-813 |
0e+00 |
|
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.
Pssm-ID: 335237 [Multi-domain] Cd Length: 506 Bit Score: 939.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 308 DYIPCLDNVQAIRSLPSTKHYEHRERHCPDS--PPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKV 385
Cdd:pfam03141 1 DYIPCLDNKRAIKFLLSRERMEHRERHCPPPeeKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 386 TGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALE 465
Cdd:pfam03141 81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 466 RGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQK-KTEDVEIWKAMSEL 544
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVYARtEEDLQEIWKEMEDL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 545 IKKMCWELVSINKDtingvgVATYRKPTSNECYKNRSE-PVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQ 623
Cdd:pfam03141 241 TKSLCWKLVAKKGD------IAIWQKPLNNSCYNKREPgKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWPEP 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 624 WPARLEKAPFWLSSSQtgvYGKAAPEDFSADYEHWKRVVTKSY-LNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVM 702
Cdd:pfam03141 315 WPARLTAVPPRLSSGQ---IGGVSPESFKADTELWKKRVNKYKrLLKLGIDWGKVRNVMDMNAGFGGFAAALIDLPVWVM 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 703 NVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAET 782
Cdd:pfam03141 392 NVVPVDSPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDSVDV 471
|
490 500 510
....*....|....*....|....*....|....*
gi 21928175 783 IQQVEGMVKAMKWEVRMTYSKE----KEGLLSVQK 813
Cdd:pfam03141 472 LDKVKKIAKAMRWEVRMTDTEDgphvPEKILIAQK 506
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
399-521 |
3.24e-09 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 56.16 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 399 FKHGALHYiDFIQESVPAIAWGKRSRVvLDVGCGVASFGGFLFDRDVITMSLapkDEHEAQVQFALERGIPA---ISAVM 475
Cdd:COG2226 1 FDRVAARY-DGREALLAALGLRPGARV-LDLGCGTGRLALALAERGARVTGV---DISPEMLELARERAAEAglnVEFVV 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 21928175 476 GT-TRLPFPGRVFDIVHCARcrVPWHIEG-GKLLLELNRVLRPGGFFV 521
Cdd:COG2226 76 GDaEDLPFPDGSFDLVISSF--VLHHLPDpERALAEIARVLKPGGRLV 121
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
427-521 |
2.17e-08 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 52.28 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 427 LDVGCGVASFGGFLFDR--DVITMSLAPKdeheaQVQFALERGIPA-ISAVMGT-TRLPFPGRVFDIVHCarCRVPWHIE 502
Cdd:pfam08241 1 LDVGCGTGLLTELLARLgaRVTGVDISPE-----MLELAREKAPREgLTFVVGDaEDLPFPDNSFDLVLS--SEVLHHVE 73
|
90 100
....*....|....*....|
gi 21928175 503 -GGKLLLELNRVLRPGGFFV 521
Cdd:pfam08241 74 dPERALREIARVLKPGGILI 93
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
426-518 |
4.57e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 48.71 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 426 VLDVGCGVASFGGFL---FDRDVITMslapkDEHEAQVQFALERGI---PAISAVMGT-TRLPFPGRVFDIVHCARC-RV 497
Cdd:pfam13649 1 VLDLGCGTGRLTLALarrGGARVTGV-----DLSPEMLERARERAAeagLNVEFVQGDaEDLPFPDGSFDLVVSSGVlHH 75
|
90 100
....*....|....*....|.
gi 21928175 498 PWHIEGGKLLLELNRVLRPGG 518
Cdd:pfam13649 76 LPDPDLEAALREIARVLKPGG 96
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
405-521 |
8.33e-06 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 45.78 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 405 HYIDFIQESVPAiawGKRsrvVLDVGCGVASFGGFLFDR--DVITMSLAPKDEHEAQvQFALERGIPAISAVMgtTRLPF 482
Cdd:COG2227 13 RLAALLARLLPA---GGR---VLDVGCGTGRLALALARRgaDVTGVDISPEALEIAR-ERAAELNVDFVQGDL--EDLPL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 21928175 483 PGRVFDIVHCarCRVPWHIEG-GKLLLELNRVLRPGGFFV 521
Cdd:COG2227 84 EDGSFDLVIC--SEVLEHLPDpAALLRELARLLKPGGLLL 121
|
|
| PRK08317 |
PRK08317 |
hypothetical protein; Provisional |
426-518 |
1.48e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 181382 [Multi-domain] Cd Length: 241 Bit Score: 47.24 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 426 VLDVGCGvasfGGFlfdrDVITMS--------LAPKDEHEAQVQFALER---GIPAISAVMG-TTRLPFPGRVFDIVhCA 493
Cdd:PRK08317 23 VLDVGCG----PGN----DARELArrvgpegrVVGIDRSEAMLALAKERaagLGPNVEFVRGdADGLPFPDGSFDAV-RS 93
|
90 100
....*....|....*....|....*.
gi 21928175 494 rCRVPWHIEG-GKLLLELNRVLRPGG 518
Cdd:PRK08317 94 -DRVLQHLEDpARALAEIARVLRPGG 118
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
125-292 |
8.35e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 46.53 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 125 SETKSETEGGEDQKDDSKS----------ENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNElgEDGENQKQFES 194
Cdd:TIGR00927 663 SGGEAEQEGETETKGENESegeipaerkgEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE--GEIETGEEGEE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 195 DNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFS 274
Cdd:TIGR00927 741 VEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSE 820
|
170 180
....*....|....*....|
gi 21928175 275 TQA--TESKNEKEAQKGSGD 292
Cdd:TIGR00927 821 TQAddTEVKDETGEQELNAE 840
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
50-295 |
1.10e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 50 DEVSLDNK----DGIKKQMTP--PAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKeektkeeftp 123
Cdd:NF033609 525 NEVAFNNGsgsgDGIDKPVVPeqPDEPGEIEPIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDS---------- 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 124 SSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNSDEEN-PDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSI 202
Cdd:NF033609 595 ASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSaSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 674
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 203 DDDKKSSDDDKENKTGNEDTETKTEKE---NTETNVDVQVEQEGQSKNETSGDlSPPGAQLELLNETTAQNGSFSTQATE 279
Cdd:NF033609 675 DSDSDSDSDSDSDSDSDSDSDSDSDSDsdsDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSD 753
|
250
....*....|....*.
gi 21928175 280 SKNEKEAQKGSGDKLD 295
Cdd:NF033609 754 SDSDSDSDSDSDSDSD 769
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
82-295 |
8.26e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 82 ETPNEDKKGDGDASLPKEDESSSKQDNQEEKkeektkeeftpsSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNS 161
Cdd:COG5271 527 DPEDSDEDALEDETEGEENAPGSDQDADETD------------EPEATAEEDEPDEAEAETEDATENADADETEESADES 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 162 DEENPDTNEKQTKPETEDNELGEDGENQkqfESDNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQ 241
Cdd:COG5271 595 EEAEASEDEAAEEEEADDDEADADADGA---ADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAED 671
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 21928175 242 EGQSKNETSG----DLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGSGDKLD 295
Cdd:COG5271 672 ESETSSEDAEedadAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAE 729
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
38-298 |
9.98e-04 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.06 E-value: 9.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 38 MTSSSVGPAQNVDEVSLDNKDGIKKQMTPPAEEGNGQKFEDAPVETPNEDKKgDGDASLPKEDESSSKQDNQEEKKEEK- 116
Cdd:TIGR00927 630 LSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENES-EGEIPAERKGEQEGEGEIEAKEADHKg 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 117 TKEEFTPSSETKSETEGGEDQKDdskSENGGGGDLDEKKDLKD----NSDEENPDTNEKQTKPETEDNELGEDGENQKQF 192
Cdd:TIGR00927 709 ETEAEEVEHEGETEAEGTEDEGE---IETGEEGEEVEDEGEGEaegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQA 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 193 ESD-----------NGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLE 261
Cdd:TIGR00927 786 GEDgemkgdegaegKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEE 865
|
250 260 270
....*....|....*....|....*....|....*..
gi 21928175 262 LLNETTAQngsfSTQATESKNEKEAQKGSGDKLDYKW 298
Cdd:TIGR00927 866 EEEEEEEE----EEEEEEEEEEEEEEEENEEPLSLEW 898
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
150-248 |
1.74e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.08 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 150 DLDEKK--DLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDK--ENKTGNEDTETK 225
Cdd:PTZ00341 418 DLEKQKymDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEivEEQSVNEHVEEP 497
|
90 100
....*....|....*....|....
gi 21928175 226 TEKENTET-NVDVQVEQEGQSKNE 248
Cdd:PTZ00341 498 TVADIVEQeTVDEHVEEPAVDENE 521
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
426-521 |
2.52e-03 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 38.18 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 426 VLDVGCGVasfGGFLF------DRDVITMSLAPKDEHEAQvQFALERGIPAISAVMG--TTRLPFPGRVFDIVHCARCRV 497
Cdd:cd02440 2 VLDLGCGT---GALALalasgpGARVTGVDISPVALELAR-KAAAALLADNVEVLKGdaEELPPEADESFDVIISDPPLH 77
|
90 100
....*....|....*....|....
gi 21928175 498 PWHIEGGKLLLELNRVLRPGGFFV 521
Cdd:cd02440 78 HLVEDLARFLEEARRLLKPGGVLV 101
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
55-292 |
2.81e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.54 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 55 DNKDGIKKQMTPPAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEekkeektkeefTPSSETKSETEGG 134
Cdd:COG5271 447 EEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEEEAEEDAEA-----------EADSDELTAEETS 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 135 EDQKDDS-------KSENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQ--FESDNGEKKSIDDD 205
Cdd:COG5271 516 ADDGADTdaaadpeDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATenADADETEESADESE 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 206 KKSS---DDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQATESKN 282
Cdd:COG5271 596 EAEAsedEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDESET 675
|
250
....*....|
gi 21928175 283 EKEAQKGSGD 292
Cdd:COG5271 676 SSEDAEEDAD 685
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
55-232 |
3.10e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.72 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 55 DNKDGIKKQMTPPAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEkkeektkeeftpSSETKSETEGG 134
Cdd:PHA03169 78 ESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASH------------SPPPSPPSHPG 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 135 EDQKDDSKSENGGGGDLDEKKDLKDNSDE-ENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDK 213
Cdd:PHA03169 146 PHEPAPPESHNPSPNQQPSSFLQPSHEDSpEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225
|
170
....*....|....*....
gi 21928175 214 ENKTGNEDTETKTEKENTE 232
Cdd:PHA03169 226 NTQQAVEHEDEPTEPEREG 244
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
37-292 |
3.14e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.15 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 37 MMTSSSVGPAQNVDEVSLDNKDGIKKQMTPPAEEGNgQKFEDAPVETPNEDKKGDGDASLPKEDESSSK----QDNQEEK 112
Cdd:COG5271 258 AGATAEVGGTPDTDDEATDDADGLEAAEDDALDAEL-TAAQAADPESDDDADDSTLAALEGAAEDTEIAtadeLAAADDE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 113 KEEKTKEEFTPSSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQF 192
Cdd:COG5271 337 DDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 193 ESDNGEKKSIDDDKKSSDDDKENKTGNE-DTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNG 271
Cdd:COG5271 417 EEEADEDASAGETEDESTDVTSAEDDIAtDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEEEA 496
|
250 260
....*....|....*....|.
gi 21928175 272 SFSTQATESKNEKEAQKGSGD 292
Cdd:COG5271 497 EEDAEAEADSDELTAEETSAD 517
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
67-287 |
5.49e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.38 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 67 PAEEGNGQKFEDAPV---ETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQKDDSKS 143
Cdd:COG5271 591 ADESEEAEASEDEAAeeeEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAE 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 144 ENGGGGDLDEKKDLKDNSDEENPDTNEKQ---------------TKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKS 208
Cdd:COG5271 671 DESETSSEDAEEDADAAAAEASDDEEETEeadedaetaseeadaEEADTEADGTAEEAEEAAEEAESADEEAASLPDEAD 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 209 SDDDKENKTGNEDTETKTEKENTETNVDVQVE-------QEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQATESK 281
Cdd:COG5271 751 AEEEAEEAEEAEEDDADGLEEALEEEKADAEEaatdeeaEAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEET 830
|
....*.
gi 21928175 282 NEKEAQ 287
Cdd:COG5271 831 ADEALE 836
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
38-288 |
7.59e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.00 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 38 MTSSSVGPAQNVDEVSLDNKDGIKKQ-MTPPAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEK 116
Cdd:COG5271 339 DDSAAEDAAEEAATAEDSAAEDTQDAeDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEE 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 117 TKeeftpsSETKSETEGGEDQKDDSKSENGGGGD--LDEKKDLKDNSDEENPDTNEKQTKPE-------TEDNELGEDGE 187
Cdd:COG5271 419 EA------DEDASAGETEDESTDVTSAEDDIATDeeADSLADEEEEAEAELDTEEDTESAEEdadgdeaTDEDDASDDGD 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21928175 188 NQKQFESDNGEKKSIDDDKKSSDDDKENKTgneDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPpgaqlelLNETT 267
Cdd:COG5271 493 EEEAEEDAEAEADSDELTAEETSADDGADT---DAAADPEDSDEDALEDETEGEENAPGSDQDADETD-------EPEAT 562
|
250 260
....*....|....*....|.
gi 21928175 268 AQNGSFSTQATESKNEKEAQK 288
Cdd:COG5271 563 AEEDEPDEAEAETEDATENAD 583
|
|
| |
