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Conserved domains on  [gi|23240198|gb|AAM70819|]
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Zinc/iron regulated transporter-related protein 42C.1 [Drosophila melanogaster]

Protein Classification

ZIP family transporter( domain architecture ID 10495033)

ZIP family transporter may function as a zinc transporter, mediating the uptake of zinc in bacteria or the transport of zinc from one cellular compartment to another in eukaryotes

Gene Ontology:  GO:0046873|GO:0030001
PubMed:  23046653|10748254
TCDB:  2.A.5

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Zip pfam02535
ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative ...
21-336 9.61e-57

ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family.


:

Pssm-ID: 396884 [Multi-domain]  Cd Length: 325  Bit Score: 187.58  E-value: 9.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    21 LVAKIVSMVVLVVITVLCGSLPYVLNRCFHWTkaspeetRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS 100
Cdd:pfam02535   1 LLLKIYAIFAILIISLIGGLLPLLVPKISKLR-------PSSKLLSLLLAFASGVLLGTAFLHLLPEALEALESLCLSDH 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   101 LVKTPFAlaEMLLCTGFFLMYALDELMTSLV--------RHHQGKLSRKESVASLAFERGRSIR-HSVLLNPQAKEEVEV 171
Cdd:pfam02535  74 GWHFPFA--GLIVLLGFLLVLLVEKLLTYYKhrptpgpaDNSHSHLATVKSVSNVEVTESEEGEdHGHLHGHDDDSDELL 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   172 KDTEPQPHKDHHGHSHMPVPADDGSSARGLGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELLV 251
Cdd:pfam02535 152 HKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   252 ARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIACGTLLYVVFFEILIESHAGWR--------AL 323
Cdd:pfam02535 232 AGFSRKKAVLLALLFALTTPLGILIGIGVSSIGNSPGADITSGILLAFSAGTFLYVALVELLPHELLRNKsseklsllQL 311
                         330
                  ....*....|...
gi 23240198   324 VAAVAGFALMFGL 336
Cdd:pfam02535 312 LALLLGFALMALL 324
 
Name Accession Description Interval E-value
Zip pfam02535
ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative ...
21-336 9.61e-57

ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family.


Pssm-ID: 396884 [Multi-domain]  Cd Length: 325  Bit Score: 187.58  E-value: 9.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    21 LVAKIVSMVVLVVITVLCGSLPYVLNRCFHWTkaspeetRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS 100
Cdd:pfam02535   1 LLLKIYAIFAILIISLIGGLLPLLVPKISKLR-------PSSKLLSLLLAFASGVLLGTAFLHLLPEALEALESLCLSDH 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   101 LVKTPFAlaEMLLCTGFFLMYALDELMTSLV--------RHHQGKLSRKESVASLAFERGRSIR-HSVLLNPQAKEEVEV 171
Cdd:pfam02535  74 GWHFPFA--GLIVLLGFLLVLLVEKLLTYYKhrptpgpaDNSHSHLATVKSVSNVEVTESEEGEdHGHLHGHDDDSDELL 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   172 KDTEPQPHKDHHGHSHMPVPADDGSSARGLGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELLV 251
Cdd:pfam02535 152 HKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   252 ARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIACGTLLYVVFFEILIESHAGWR--------AL 323
Cdd:pfam02535 232 AGFSRKKAVLLALLFALTTPLGILIGIGVSSIGNSPGADITSGILLAFSAGTFLYVALVELLPHELLRNKsseklsllQL 311
                         330
                  ....*....|...
gi 23240198   324 VAAVAGFALMFGL 336
Cdd:pfam02535 312 LALLLGFALMALL 324
ZupT COG0428
Zinc transporter ZupT [Inorganic ion transport and metabolism];
71-339 2.03e-17

Zinc transporter ZupT [Inorganic ion transport and metabolism];


Pssm-ID: 440197 [Multi-domain]  Cd Length: 243  Bit Score: 80.23  E-value: 2.03e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  71 FGGGVLICTTFLHMLPEVIEVVEAlqecgslvktpFALAEMLLCTGFFLMYALDELMtslvrhhqgklsrkesvaslafe 150
Cdd:COG0428  42 FAAGVMLAASFFELLPEALELGEG-----------PLLAALGFLLGALLLFLLDRLL----------------------- 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198 151 rgrsirhsvllnpqakeevevkdtepqphkdhhGHSHMPVPADDGSSARGLGIILALSLHELFEGMAIG--LEGTVSTVW 228
Cdd:COG0428  88 ---------------------------------PHEHRGAEPAKAHLRRGLLIALGITLHNFPEGLAIGvaFAADPALGL 134
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198 229 FMFGAVSAHKLVLAFCVGMELLVARTRSSLAILYLVTFSIVTPIGIGVGLGIsqqVAAGQPSLPsgVLQGIACGTLLYVV 308
Cdd:COG0428 135 ALALAIALHNIPEGLAVAAPLRAAGYSRRKALLLGLLSGLVEPLGALLGYLL---LSLSPALLP--YLLAFAAGAMLYVV 209
                       250       260       270
                ....*....|....*....|....*....|....
gi 23240198 309 FFEILIESHA---GWRALVAAVAGFALMFGLQIL 339
Cdd:COG0428 210 VDELIPEAHReghSRLATLGLLLGFLLMMLLDVL 243
zip TIGR00820
ZIP zinc/iron transport family; The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5) ...
21-313 4.86e-14

ZIP zinc/iron transport family; The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5)Members of the ZIP family consist of proteins with eight putative transmembrane spanners. They are derived from animals, plants and yeast. Theycomprise a diverse family, with several paralogues in any one organism (e.g., at least five in Caenorabditis elegans, at least five in Arabidopsis thaliana and two inSaccharomyces cervisiae. The two S. cerevisiae proteins, Zrt1 and Zrt2, both probably transport Zn2+ with high specificity, but Zrt1 transports Zn2+ with ten-fold higher affinitythan Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+, and at least one transports a range of metal ions. The energy source fortransport has not been characterized, but these systems probably function as secondary carriers. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273287  Cd Length: 324  Bit Score: 72.04  E-value: 4.86e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    21 LVAKIVSMVVLVVITVLCGSLPyVLNRCFHwtkASPEETRSSLVVRCllfFGGGVLICTTFLHMLPEVIEvveALQECgS 100
Cdd:TIGR00820  16 LKLKIVAIFSILLASVIGVMFP-LIGKNVP---SLRPEGNFFFVAKA---FAAGVILATGFMHVLPEAFE---MLSSP-C 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   101 LVKTPFALAEMllcTGFFLMYALdeLMTSLVrhhqgklsrkESVASLAFERGRSirhsvlLNPQAKEEVEVKDTEPQ--- 177
Cdd:TIGR00820  85 LESTPWGKFPF---AGFIAMISA--ILTLLV----------DLFATSYYERKHG------KGDHGSKEIKVGDGEEGtag 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   178 PHKDHHGHSHMPVPADDGSSA----RGLGIILALSL--HELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELLV 251
Cdd:TIGR00820 144 GTKHGHEYYEDHVHTNSEVVQllrqRVVAQVLELGIivHSVVIGLSLGASQSPDTIKPLIAALSFHQFFEGLGLGGCISQ 223
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23240198   252 ARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPS--LPSGVLQGIACGTLLYVVFFEIL 313
Cdd:TIGR00820 224 AEFKCKSVTIMCTFFAVTTPLGIAIGMGISSSYDDSSPTalIVEGVLNAASAGILIYMALVDLL 287
PLN02159 PLN02159
Fe(2+) transport protein
3-333 3.96e-06

Fe(2+) transport protein


Pssm-ID: 177818  Cd Length: 337  Bit Score: 48.01  E-value: 3.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    3 ATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCF-HWTKASPEETRSSLVVRCllfFGGGVLICTTF 81
Cdd:PLN02159  21 ATSTAPEECDSESANPCINKAKALPLKIIAIVAILTTSMIGVTAPLFsRYVSFLRPDGNIFTIVKC---FASGIILGTGF 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   82 LHMLPEVIEVVEAlqECgsLVKTP---FALAEMLLCTGFFLMYALDELMTSLvrhhqgkLSRKESVAslafergrsirhs 158
Cdd:PLN02159  98 MHVLPDSFEMLSS--KC--LEDNPwhkFPFAGFVAMLSGLVTLAIDSMATSL-------YTSKNSVG------------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  159 vllnpqakeevevkdtePQPHKDH-HGHSHMPVPADDGSSA----RGLGIILALSL--HELFEGMAIGLEGTVSTVWFMF 231
Cdd:PLN02159 154 -----------------PMPDHGHsHGHGVVLKTKDDGNAQllryRVIAMVLELGIivHSVVIGLSLGATNDTCTIKGLI 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  232 GAVSAHKLVLAFCVGMELLVARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPS--LPSGVLQGIACGTLLYVVF 309
Cdd:PLN02159 217 AALCFHQMFEGMGLGGCILQAEYTNVKKFLMAFFFAVTTPFGIFLGIALSSIYRDNSPTalITVGLLNACSAGLLIYMAL 296
                        330       340       350
                 ....*....|....*....|....*....|....
gi 23240198  310 FEILIESHAG----------WRALVAAVAGFALM 333
Cdd:PLN02159 297 VDLLAAEFMGpklqgsiklqIKCFFAALLGCGGM 330
 
Name Accession Description Interval E-value
Zip pfam02535
ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative ...
21-336 9.61e-57

ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family.


Pssm-ID: 396884 [Multi-domain]  Cd Length: 325  Bit Score: 187.58  E-value: 9.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    21 LVAKIVSMVVLVVITVLCGSLPYVLNRCFHWTkaspeetRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS 100
Cdd:pfam02535   1 LLLKIYAIFAILIISLIGGLLPLLVPKISKLR-------PSSKLLSLLLAFASGVLLGTAFLHLLPEALEALESLCLSDH 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   101 LVKTPFAlaEMLLCTGFFLMYALDELMTSLV--------RHHQGKLSRKESVASLAFERGRSIR-HSVLLNPQAKEEVEV 171
Cdd:pfam02535  74 GWHFPFA--GLIVLLGFLLVLLVEKLLTYYKhrptpgpaDNSHSHLATVKSVSNVEVTESEEGEdHGHLHGHDDDSDELL 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   172 KDTEPQPHKDHHGHSHMPVPADDGSSARGLGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELLV 251
Cdd:pfam02535 152 HKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   252 ARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIACGTLLYVVFFEILIESHAGWR--------AL 323
Cdd:pfam02535 232 AGFSRKKAVLLALLFALTTPLGILIGIGVSSIGNSPGADITSGILLAFSAGTFLYVALVELLPHELLRNKsseklsllQL 311
                         330
                  ....*....|...
gi 23240198   324 VAAVAGFALMFGL 336
Cdd:pfam02535 312 LALLLGFALMALL 324
ZupT COG0428
Zinc transporter ZupT [Inorganic ion transport and metabolism];
71-339 2.03e-17

Zinc transporter ZupT [Inorganic ion transport and metabolism];


Pssm-ID: 440197 [Multi-domain]  Cd Length: 243  Bit Score: 80.23  E-value: 2.03e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  71 FGGGVLICTTFLHMLPEVIEVVEAlqecgslvktpFALAEMLLCTGFFLMYALDELMtslvrhhqgklsrkesvaslafe 150
Cdd:COG0428  42 FAAGVMLAASFFELLPEALELGEG-----------PLLAALGFLLGALLLFLLDRLL----------------------- 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198 151 rgrsirhsvllnpqakeevevkdtepqphkdhhGHSHMPVPADDGSSARGLGIILALSLHELFEGMAIG--LEGTVSTVW 228
Cdd:COG0428  88 ---------------------------------PHEHRGAEPAKAHLRRGLLIALGITLHNFPEGLAIGvaFAADPALGL 134
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198 229 FMFGAVSAHKLVLAFCVGMELLVARTRSSLAILYLVTFSIVTPIGIGVGLGIsqqVAAGQPSLPsgVLQGIACGTLLYVV 308
Cdd:COG0428 135 ALALAIALHNIPEGLAVAAPLRAAGYSRRKALLLGLLSGLVEPLGALLGYLL---LSLSPALLP--YLLAFAAGAMLYVV 209
                       250       260       270
                ....*....|....*....|....*....|....
gi 23240198 309 FFEILIESHA---GWRALVAAVAGFALMFGLQIL 339
Cdd:COG0428 210 VDELIPEAHReghSRLATLGLLLGFLLMMLLDVL 243
zip TIGR00820
ZIP zinc/iron transport family; The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5) ...
21-313 4.86e-14

ZIP zinc/iron transport family; The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5)Members of the ZIP family consist of proteins with eight putative transmembrane spanners. They are derived from animals, plants and yeast. Theycomprise a diverse family, with several paralogues in any one organism (e.g., at least five in Caenorabditis elegans, at least five in Arabidopsis thaliana and two inSaccharomyces cervisiae. The two S. cerevisiae proteins, Zrt1 and Zrt2, both probably transport Zn2+ with high specificity, but Zrt1 transports Zn2+ with ten-fold higher affinitythan Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+, and at least one transports a range of metal ions. The energy source fortransport has not been characterized, but these systems probably function as secondary carriers. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273287  Cd Length: 324  Bit Score: 72.04  E-value: 4.86e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    21 LVAKIVSMVVLVVITVLCGSLPyVLNRCFHwtkASPEETRSSLVVRCllfFGGGVLICTTFLHMLPEVIEvveALQECgS 100
Cdd:TIGR00820  16 LKLKIVAIFSILLASVIGVMFP-LIGKNVP---SLRPEGNFFFVAKA---FAAGVILATGFMHVLPEAFE---MLSSP-C 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   101 LVKTPFALAEMllcTGFFLMYALdeLMTSLVrhhqgklsrkESVASLAFERGRSirhsvlLNPQAKEEVEVKDTEPQ--- 177
Cdd:TIGR00820  85 LESTPWGKFPF---AGFIAMISA--ILTLLV----------DLFATSYYERKHG------KGDHGSKEIKVGDGEEGtag 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   178 PHKDHHGHSHMPVPADDGSSA----RGLGIILALSL--HELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELLV 251
Cdd:TIGR00820 144 GTKHGHEYYEDHVHTNSEVVQllrqRVVAQVLELGIivHSVVIGLSLGASQSPDTIKPLIAALSFHQFFEGLGLGGCISQ 223
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23240198   252 ARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPS--LPSGVLQGIACGTLLYVVFFEIL 313
Cdd:TIGR00820 224 AEFKCKSVTIMCTFFAVTTPLGIAIGMGISSSYDDSSPTalIVEGVLNAASAGILIYMALVDLL 287
PLN02159 PLN02159
Fe(2+) transport protein
3-333 3.96e-06

Fe(2+) transport protein


Pssm-ID: 177818  Cd Length: 337  Bit Score: 48.01  E-value: 3.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198    3 ATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCF-HWTKASPEETRSSLVVRCllfFGGGVLICTTF 81
Cdd:PLN02159  21 ATSTAPEECDSESANPCINKAKALPLKIIAIVAILTTSMIGVTAPLFsRYVSFLRPDGNIFTIVKC---FASGIILGTGF 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198   82 LHMLPEVIEVVEAlqECgsLVKTP---FALAEMLLCTGFFLMYALDELMTSLvrhhqgkLSRKESVAslafergrsirhs 158
Cdd:PLN02159  98 MHVLPDSFEMLSS--KC--LEDNPwhkFPFAGFVAMLSGLVTLAIDSMATSL-------YTSKNSVG------------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  159 vllnpqakeevevkdtePQPHKDH-HGHSHMPVPADDGSSA----RGLGIILALSL--HELFEGMAIGLEGTVSTVWFMF 231
Cdd:PLN02159 154 -----------------PMPDHGHsHGHGVVLKTKDDGNAQllryRVIAMVLELGIivHSVVIGLSLGATNDTCTIKGLI 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23240198  232 GAVSAHKLVLAFCVGMELLVARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPS--LPSGVLQGIACGTLLYVVF 309
Cdd:PLN02159 217 AALCFHQMFEGMGLGGCILQAEYTNVKKFLMAFFFAVTTPFGIFLGIALSSIYRDNSPTalITVGLLNACSAGLLIYMAL 296
                        330       340       350
                 ....*....|....*....|....*....|....
gi 23240198  310 FEILIESHAG----------WRALVAAVAGFALM 333
Cdd:PLN02159 297 VDLLAAEFMGpklqgsiklqIKCFFAALLGCGGM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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