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Conserved domains on  [gi|21429104|gb|AAM50271|]
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LD44530p [Drosophila melanogaster]

Protein Classification

PKK domain-containing protein( domain architecture ID 12116546)

PKK domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 120-257 2.25e-25

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


:

Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 100.71  E-value: 2.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   120 EQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEQEQELKIFRENLKQEIRLLKQ 199
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKELKQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 21429104   200 EVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKHRDHLATI 257
Cdd:pfam12474  81 EVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQLQNEKRKELAEH 138
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 288-428 4.07e-22

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


:

Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 91.85  E-value: 4.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   288 HQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLdPE 367
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKE-LK 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21429104   368 IERDRLKKFQEQEKKRYMQEERRFEvKHQKQLEELRATRESAIKELEQLQNEKRRALVEHE 428
Cdd:pfam12474  80 QEVEKLPKFQRKEAKRQRKEELELE-QKHEELEFLQAQSEALERELQQLQNEKRKELAEHE 139
 
Name Accession Description Interval E-value
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 120-257 2.25e-25

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 100.71  E-value: 2.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   120 EQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEQEQELKIFRENLKQEIRLLKQ 199
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKELKQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 21429104   200 EVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKHRDHLATI 257
Cdd:pfam12474  81 EVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQLQNEKRKELAEH 138
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 288-428 4.07e-22

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 91.85  E-value: 4.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   288 HQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLdPE 367
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKE-LK 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21429104   368 IERDRLKKFQEQEKKRYMQEERRFEvKHQKQLEELRATRESAIKELEQLQNEKRRALVEHE 428
Cdd:pfam12474  80 QEVEKLPKFQRKEAKRQRKEELELE-QKHEELEFLQAQSEALERELQQLQNEKRKELAEHE 139
PTZ00121 PTZ00121
MAEBL; Provisional
 95-352 8.38e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.68  E-value: 8.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    95 RKQELRELKLLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKR 174
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   175 IRSEQEQELKIFRENLKQEIRLLKQ------EVDLFPKDKRKDEFKQRRSAMELDHEEKERafldslKERHELLLRRLSE 248
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEElkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDE------KKAAEALKKEAEE 1700

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   249 KHRdhLATINRNFLQQKQNAMRTREA-LLWELEEKQLHERHQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEED 327
Cdd:PTZ00121 1701 AKK--AEELKKKEAEEKKKAEELKKAeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778

                         250       260
                  ....*....|....*....|....*
gi 21429104   328 MVKKQTMEKRALPKRIRAERKARDL 352
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDI 1803
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 96-454 1.16e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.09  E-value: 1.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104  96 KQELRELK----LLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEAdmdmLARQHKQLVEKTEQTQENELRSS 171
Cdd:COG1196 219 KEELKELEaellLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYELL 294

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 172 SKRIRSEQEQELKIFR-ENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKH 250
Cdd:COG1196 295 AELARLEQDIARLEERrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 251 RDHLATINRnFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHvkelcfmQRHQMIIRHEKELDQVKRMLQRKEEDMVK 330
Cdd:COG1196 375 AEAEEELEE-LAEELLEALRAAAELAAQLEELEEAEEALLERLE-------RLEEELEELEEALAELEEEEEEEEEALEE 446

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 331 KQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLEELRATRESAI 410
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....
gi 21429104 411 KELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQLVPRK 454
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 166-450 1.63e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 1.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    166 NELRSSSKRIR--SEQEQELKIFRENLKQ-EIRLLKQEVDLFpkDKRKDEFKQRRSAMELDHEEKERAfLDSLKERHELL 242
Cdd:TIGR02168  196 NELERQLKSLErqAEKAERYKELKAELRElELALLVLRLEEL--REELEELQEELKEAEEELEELTAE-LQELEEKLEEL 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    243 LRRLSEKHRDhLATINRNFLQQKQnamrtreallwELEEKQLHERHQLSKRHvkelcfmQRHQMIIRHEKELDQVKRMLQ 322
Cdd:TIGR02168  273 RLEVSELEEE-IEELQKELYALAN-----------EISRLEQQKQILRERLA-------NLERQLEELEAQLEELESKLD 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    323 RKEED--MVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLE 400
Cdd:TIGR02168  334 ELAEElaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 21429104    401 ELRATRESAIKELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQL 450
Cdd:TIGR02168  414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 341-455 3.13e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.20  E-value: 3.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104  341 KRIRAERKARDLmfrESLRISTnldpEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLEELRATRESAIKELEQLQNEK 420
Cdd:PRK00409 528 LERELEQKAEEA---EALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 21429104  421 RRALVEHEhskLSEIDERLKGELREWREQLVPRKQ 455
Cdd:PRK00409 601 YASVKAHE---LIEARKRLNKANEKKEKKKKKQKE 632
 
Name Accession Description Interval E-value
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 120-257 2.25e-25

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 100.71  E-value: 2.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   120 EQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEQEQELKIFRENLKQEIRLLKQ 199
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKELKQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 21429104   200 EVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKHRDHLATI 257
Cdd:pfam12474  81 EVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQLQNEKRKELAEH 138
PKK pfam12474
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ...
 288-428 4.07e-22

Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.


Pssm-ID: 463600 [Multi-domain]  Cd Length: 139  Bit Score: 91.85  E-value: 4.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   288 HQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLdPE 367
Cdd:pfam12474   1 HQLQKEQQKDRFEQERQQLKKRYEKELEQLERQQKQQIEKLEQRQTQELRRLPKRIRAEQKKRLKMFRESLKQEKKE-LK 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21429104   368 IERDRLKKFQEQEKKRYMQEERRFEvKHQKQLEELRATRESAIKELEQLQNEKRRALVEHE 428
Cdd:pfam12474  80 QEVEKLPKFQRKEAKRQRKEELELE-QKHEELEFLQAQSEALERELQQLQNEKRKELAEHE 139
PTZ00121 PTZ00121
MAEBL; Provisional
 95-352 8.38e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.68  E-value: 8.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    95 RKQELRELKLLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKR 174
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   175 IRSEQEQELKIFRENLKQEIRLLKQ------EVDLFPKDKRKDEFKQRRSAMELDHEEKERafldslKERHELLLRRLSE 248
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEElkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDE------KKAAEALKKEAEE 1700

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   249 KHRdhLATINRNFLQQKQNAMRTREA-LLWELEEKQLHERHQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEED 327
Cdd:PTZ00121 1701 AKK--AEELKKKEAEEKKKAEELKKAeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778

                         250       260
                  ....*....|....*....|....*
gi 21429104   328 MVKKQTMEKRALPKRIRAERKARDL 352
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDI 1803
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 96-454 1.16e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.09  E-value: 1.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104  96 KQELRELK----LLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEAdmdmLARQHKQLVEKTEQTQENELRSS 171
Cdd:COG1196 219 KEELKELEaellLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYELL 294

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 172 SKRIRSEQEQELKIFR-ENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKH 250
Cdd:COG1196 295 AELARLEQDIARLEERrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 251 RDHLATINRnFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHvkelcfmQRHQMIIRHEKELDQVKRMLQRKEEDMVK 330
Cdd:COG1196 375 AEAEEELEE-LAEELLEALRAAAELAAQLEELEEAEEALLERLE-------RLEEELEELEEALAELEEEEEEEEEALEE 446

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 331 KQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLEELRATRESAI 410
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....
gi 21429104 411 KELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQLVPRK 454
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
PTZ00121 PTZ00121
MAEBL; Provisional
 96-442 4.63e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    96 KQELRELKLLQKQEKKQQTELHLKEQQAK--EQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSK 173
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   174 RIRSE---------QEQELKIFRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLR 244
Cdd:PTZ00121 1470 KKADEakkkaeeakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   245 RLSEKHRDHLATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMlqRK 324
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL--KK 1627

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   325 EEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDR----LKKFQEQEKKRYMQEERRFEVKhqKQLE 400
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKkaeeAKKAEEDEKKAAEALKKEAEEA--KKAE 1705

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 21429104   401 ELRATRESAIKELEQLQNEKRRALVEHEHSKLSEIDERLKGE 442
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 176-438 5.99e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 5.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   176 RSEQEQELKIFRENLKQEIRLLKQEVDlfpkDKRKDEFKQRRSAMELDHEEKERAFLDSLK-ERHELLLRRLSEKHRDHL 254
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVE----RRRKLEEAEKARQAEMDRQAAIYAEQERMAmERERELERIRQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   255 ATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEEDMVKKQTM 334
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE 442

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   335 EKRALPKRIRAERKARdlmfRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERR------FEVKHQKQLEELRaTRES 408
Cdd:pfam17380 443 ERAREMERVRLEEQER----QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkilekeLEERKQAMIEEER-KRKL 517

                         250       260       270
                  ....*....|....*....|....*....|....
gi 21429104   409 AIKELEQLQN----EKRRALVEHEHSKLSEIDER 438
Cdd:pfam17380 518 LEKEMEERQKaiyeEERRREAEEERRKQQEMEER 551
PTZ00121 PTZ00121
MAEBL; Provisional
 106-442 1.35e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.75  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   106 QKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEqeqELKI 185
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD---EAKK 1425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   186 FRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKHRDHLATINRNFLQQK 265
Cdd:PTZ00121 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   266 QNAMRTREALLWELEEKQLHERHQLSKRhvkelcfmqrhqmiirheKELDQVKRMLQRKEEDMVKKQ------------T 333
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEA------------------KKADEAKKAEEKKKADELKKAeelkkaeekkkaE 1567

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   334 MEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLK--KFQEQEKKRYMQEERRFEVKHQKQLEELRATRESAIK 411
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKaeEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

                         330       340       350
                  ....*....|....*....|....*....|.
gi 21429104   412 ELEQLQNEKRRALVEHEHSKLSEIDERLKGE 442
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
PTZ00121 PTZ00121
MAEBL; Provisional
 95-454 4.31e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 4.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    95 RKQELRELKLLQK--QEKKQQTELHLKEQQAK--EQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRS 170
Cdd:PTZ00121 1426 KAEEKKKADEAKKkaEEAKKADEAKKKAEEAKkaEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   171 SSKRIRSEQEQELKIFRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLK--ERHELLLRRLSE 248
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKaeEDKNMALRKAEE 1585

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   249 KHRDHLATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKELcfmqrHQMIIRHEKELDQVKRMLQRKEEDM 328
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV-----EQLKKKEAEEKKKAEELKKAEEENK 1660

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   329 VKKQTMEKRALPKRIRAE--RKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLEELRATR 406
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEeaKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 21429104   407 ESAIKELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQLVPRK 454
Cdd:PTZ00121 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 95-298 6.49e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 6.49e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104  95 RKQELRELKLLQKQEKKQQTELHLKEQQAKEQQDRRFEQERsslEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKR 174
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER---RRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104 175 IRSEQEQELKifRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEkhrdHL 254
Cdd:COG1196 347 EEAEEELEEA--EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER----LE 420

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 21429104 255 ATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKEL 298
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
PTZ00121 PTZ00121
MAEBL; Provisional
 95-449 7.85e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 7.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    95 RKQELRELKLLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKR 174
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   175 IRSEQEQELKIFRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAflDSLKERHELLLRRLSEKHRDHL 254
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAE 1507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   255 ATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKELCFMQ-------------------RHQMIIRHEKELD 315
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEelkkaeekkkaeeakkaeeDKNMALRKAEEAK 1587

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   316 QVKR-----MLQRKEEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIER--DRLKKFQEQEKKRYMQEE 388
Cdd:PTZ00121 1588 KAEEarieeVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKkaEELKKAEEENKIKAAEEA 1667

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21429104   389 RRFEvKHQKQLEELRATRESAIKELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQ 449
Cdd:PTZ00121 1668 KKAE-EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
PTZ00121 PTZ00121
MAEBL; Provisional
 96-426 1.21e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    96 KQELRELKLLQKQEKKQQTELHLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKT---EQTQENELRSSS 172
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELKKAE 1561

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   173 KRIRSEQEQELKIFRENLKQEIRLLKQ-EVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKErhelllrrlSEKHR 251
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK---------AEEEK 1632

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   252 DHLATINRNFLQQKQNAMRTREAllwelEEKQLHERHQLSKRHVKElcfMQRHQMIIRHEKELDQVKRMLQRKEEDMVKK 331
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKA-----EEENKIKAAEEAKKAEED---KKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   332 QTMEKralpKRIRAERKARDLMFRESLRistnldpEIERDRLKKfQEQEKKRYMQEERRFE----------VKHQKQLEE 401
Cdd:PTZ00121 1705 EELKK----KEAEEKKKAEELKKAEEEN-------KIKAEEAKK-EAEEDKKKAEEAKKDEeekkkiahlkKEEEKKAEE 1772

                         330       340
                  ....*....|....*....|....*
gi 21429104   402 LRATRESAIKELEQLQNEKRRALVE 426
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRMEVD 1797
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 166-450 1.63e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 1.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    166 NELRSSSKRIR--SEQEQELKIFRENLKQ-EIRLLKQEVDLFpkDKRKDEFKQRRSAMELDHEEKERAfLDSLKERHELL 242
Cdd:TIGR02168  196 NELERQLKSLErqAEKAERYKELKAELRElELALLVLRLEEL--REELEELQEELKEAEEELEELTAE-LQELEEKLEEL 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    243 LRRLSEKHRDhLATINRNFLQQKQnamrtreallwELEEKQLHERHQLSKRHvkelcfmQRHQMIIRHEKELDQVKRMLQ 322
Cdd:TIGR02168  273 RLEVSELEEE-IEELQKELYALAN-----------EISRLEQQKQILRERLA-------NLERQLEELEAQLEELESKLD 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    323 RKEED--MVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLE 400
Cdd:TIGR02168  334 ELAEElaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 21429104    401 ELRATRESAIKELEQLQNEKRRALVEHEHSKLSEIDERLKGELREWREQL 450
Cdd:TIGR02168  414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 65-431 2.01e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 40.49  E-value: 2.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    65 EIDGVQMTTTTSRVIYGDDENGRIYDDHDFRKQELRELKLLQKQEKKQQTELHLKEQQAKEQQDR----RFEQERSSLEK 140
Cdd:pfam17380 241 ESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKeekaREVERRRKLEE 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   141 TYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEQEQELKIFRENLKQEIRLLKQEVDLFPKDKRKDEfkqrRSAM 220
Cdd:pfam17380 321 AEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNE----RVRQ 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   221 ELDHEEKERaFLDSLKERHELLLRRLSEKHRdhlatinrnflqQKQNAMRTREALLWELEEKQLHERhqlskrhVKELCF 300
Cdd:pfam17380 397 ELEAARKVK-ILEEERQRKIQQQKVEMEQIR------------AEQEEARQREVRRLEEERAREMER-------VRLEEQ 456

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   301 MQRHQMIIRHEKELDQVKRMLQRKEEDMVKKQTMEKRAlpKRIRAERKARDLMFRESLRISTNLDPEIErDRLKKFQEQE 380
Cdd:pfam17380 457 ERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRR--KILEKELEERKQAMIEEERKRKLLEKEME-ERQKAIYEEE 533

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 21429104   381 KKRYMQEERR----FEVKHQKQLEELRATRESAIKELEQLQNEKRRALVEHEHSK 431
Cdd:pfam17380 534 RRREAEEERRkqqeMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
PTZ00121 PTZ00121
MAEBL; Provisional
 95-442 2.63e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    95 RKQELRELKLLQKQEKKQQTEL--HLKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQE-NELRSS 171
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKaDELKKA 1286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   172 SKRIRSEQEQELKIFR--ENLKQEIRLLKQEVDLfpkDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEK 249
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKkaDEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   250 HRDHLATINRNFLQQKQNAMRTREALLWELEE-KQLHERHQLSKRHVKELCFMQRHQMIIRHEKELDQVKRMLQRKEEDM 328
Cdd:PTZ00121 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEaKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   329 VKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKRymQEERRFEVKHQKQLEELRATRES 408
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK--ADEAKKAAEAKKKADEAKKAEEA 1521

                         330       340       350
                  ....*....|....*....|....*....|....
gi 21429104   409 AIKELEQLQNEKRRALVEHEHSKLSEIDERLKGE 442
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 341-455 3.13e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.20  E-value: 3.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104  341 KRIRAERKARDLmfrESLRISTnldpEIERDRLKKFQEQEKKRYMQEERRFEVKHQKQLEELRATRESAIKELEQLQNEK 420
Cdd:PRK00409 528 LERELEQKAEEA---EALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 21429104  421 RRALVEHEhskLSEIDERLKGELREWREQLVPRKQ 455
Cdd:PRK00409 601 YASVKAHE---LIEARKRLNKANEKKEKKKKKQKE 632
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 95-439 7.50e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.88  E-value: 7.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104     95 RKQELRELKLLQKQEKKQQTELHlKEQQAKEQQDRRFEQERSSLEKTYEADMDMLARQHKQL--VEKTEQTQENELRSSS 172
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEELSRQISALRKDLarLEAEVEQLEERIAQLS 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    173 KRIRSEQEQELKIFRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLRRLSEKHRD 252
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    253 HLATINRNFLQQKQNAMR-TREALLWELEEKQLHERHQLS--KRHVKELCFMQRHQMIIRHE-----KELDQVKRMLQRK 324
Cdd:TIGR02168  834 AATERRLEDLEEQIEELSeDIESLAAEIEELEELIEELESelEALLNERASLEEALALLRSEleelsEELRELESKRSEL 913

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104    325 EEDMVKKQTMEKRALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKkrymqeeRRFEVKHQKQLEELRA 404
Cdd:TIGR02168  914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA-------RRRLKRLENKIKELGP 986

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 21429104    405 TRESAIKELEQLqnEKRRALVEHEHSKLSEIDERL 439
Cdd:TIGR02168  987 VNLAAIEEYEEL--KERYDFLTAQKEDLTEAKETL 1019
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 224-456 8.72e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 38.57  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   224 HEEKERAFLDSLKERHELLLRRLSEKHRDHLATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKELCFMQR 303
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEE 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21429104   304 HQMIIRHEKELDQVKRMLQRKEEDMvkKQTMEKrALPKRIRAERKARDLMFRESLRISTNLDPEIERDRLKKFQEQEKKR 383
Cdd:pfam17380 370 IAMEISRMRELERLQMERQQKNERV--RQELEA-ARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21429104   384 YMQEERRFEVKHQKQLEELRATRESAIKELEQLQNEKR-RALVEHEHSKL--SEIDERLKGELREWREQLVPRKQV 456
Cdd:pfam17380 447 EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKIleKELEERKQAMIEEERKRKLLEKEM 522
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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