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Conserved domains on  [gi|20976872|gb|AAM27511|]
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LD23613p [Drosophila melanogaster]

Protein Classification

G2/mitotic-specific cyclin-B( domain architecture ID 15334103)

G2/mitotic-specific cyclin-B is essential for the control of the cell cycle at the G2/M (mitosis) transition

Gene Ontology:  GO:0051301|GO:0007049

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYCLIN_CCNB1-like_rpt1 cd20507
first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 254-384 2.43e-73

first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


:

Pssm-ID: 410211 [Multi-domain]  Cd Length: 130  Bit Score: 228.95  E-value: 2.43e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 254 VSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYL 333
Cdd:cd20507   1 VSEYVKDIYKYLRQLEKKYAIDPDYLSGQPEITERMRAILVDWLVEVHLKFKLLPETLYLTVNIIDRYLSKKQ-VPRKKL 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 20976872 334 QLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDC 384
Cdd:cd20507  80 QLVGVTALLIASKYEEIYPPEIKDFVYITDNAYTREEILQMERDILKTLDF 130
CYCLIN_CCNB1-like_rpt2 cd20509
second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 389-509 3.91e-53

second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


:

Pssm-ID: 410213  Cd Length: 111  Bit Score: 175.49  E-value: 3.91e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLngnhragtgfNDRHWTPTLTFYS 468
Cdd:cd20509   1 PLPLHFLRRFSKAGGADAQKHTLAKYLMELTLLDYDMVHYKPSEIAAAALCLSRKIL----------DEPEWTPTLEHYS 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKI 509
Cdd:cd20509  71 TYSEEDLLPIVQKMAKLVVKSQTSKYQAVKNKYSSSKFMRI 111
 
Name Accession Description Interval E-value
CYCLIN_CCNB1-like_rpt1 cd20507
first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 254-384 2.43e-73

first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410211 [Multi-domain]  Cd Length: 130  Bit Score: 228.95  E-value: 2.43e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 254 VSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYL 333
Cdd:cd20507   1 VSEYVKDIYKYLRQLEKKYAIDPDYLSGQPEITERMRAILVDWLVEVHLKFKLLPETLYLTVNIIDRYLSKKQ-VPRKKL 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 20976872 334 QLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDC 384
Cdd:cd20507  80 QLVGVTALLIASKYEEIYPPEIKDFVYITDNAYTREEILQMERDILKTLDF 130
COG5024 COG5024
Cyclin [Cell division and chromosome partitioning];
232-515 6.52e-54

Cyclin [Cell division and chromosome partitioning];


Pssm-ID: 227357 [Multi-domain]  Cd Length: 440  Bit Score: 188.45  E-value: 6.52e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 232 LSSKRLAGIEDIDANDKENLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETF 311
Cdd:COG5024 155 ESKRESQSWQDLDATDQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETL 234

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 312 QLAVAIIDRYL--QVVKDTKrtyLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDCNLSRP 389
Cdd:COG5024 235 FLAINIIDRFLssRVVSLEK---YQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWP 311

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 390 LPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYS- 468
Cdd:COG5024 312 SPMSFLRRISKASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQN----------QWDRTLIHYSg 381

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 20976872 469 RYSAAHLRPITRLIAKLaRDAPQAKLKAIYNKYQGSKFQKIALRTEL 515
Cdd:COG5024 382 NYTNPDLKPLNESNKEN-LQNPSVHHDAIFPKYPSPTFGKASSPTGE 427
CYCLIN_CCNB1-like_rpt2 cd20509
second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 389-509 3.91e-53

second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410213  Cd Length: 111  Bit Score: 175.49  E-value: 3.91e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLngnhragtgfNDRHWTPTLTFYS 468
Cdd:cd20509   1 PLPLHFLRRFSKAGGADAQKHTLAKYLMELTLLDYDMVHYKPSEIAAAALCLSRKIL----------DEPEWTPTLEHYS 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKI 509
Cdd:cd20509  71 TYSEEDLLPIVQKMAKLVVKSQTSKYQAVKNKYSSSKFMRI 111
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 260-387 2.67e-51

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 171.16  E-value: 2.67e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872   260 DIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVvKDTKRTYLQLVGVT 339
Cdd:pfam00134   1 DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLDRFLSK-KSVPKNKLQLVGVT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 20976872   340 ALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDCNLS 387
Cdd:pfam00134  80 CLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILETLNFDLS 127
Cyclin_C pfam02984
Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 389-515 4.35e-40

Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain.


Pssm-ID: 397230  Cd Length: 119  Bit Score: 141.22  E-value: 4.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872   389 PLPIHFLRRYSKAAGAED--EHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHragtgfndrhWTPTLTF 466
Cdd:pfam02984   1 PTPLSFLRRFSKAADYLHdlELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLNSPE----------WTETLEH 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 20976872   467 YSRYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKIALRTEL 515
Cdd:pfam02984  71 YTGYSEEDLKPCVKLLLELLLNAPSSKLQAVRRKYSSSKFMKVSTLPPL 119
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 295-380 2.46e-17

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 76.86  E-value: 2.46e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872    295 DWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRtYLQLVGVTALFIATKYEELFPPAIGDFVFITDdtYTARQIRQM 374
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKY-SPSLIAAAALYLASKTEETPPWTKELVHYTGY--FTEEEILRM 77


                   ....*.
gi 20976872    375 ELQIFK 380
Cdd:smart00385  78 ERLLLE 83
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 393-484 4.71e-14

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 67.62  E-value: 4.71e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872    393 HFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYSRY-S 471
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLASKTEETP----------PWTKELVHYTGYfT 70

                           90
                   ....*....|...
gi 20976872    472 AAHLRPITRLIAK 484
Cdd:smart00385  71 EEEILRMERLLLE 83
 
Name Accession Description Interval E-value
CYCLIN_CCNB1-like_rpt1 cd20507
first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 254-384 2.43e-73

first cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410211 [Multi-domain]  Cd Length: 130  Bit Score: 228.95  E-value: 2.43e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 254 VSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYL 333
Cdd:cd20507   1 VSEYVKDIYKYLRQLEKKYAIDPDYLSGQPEITERMRAILVDWLVEVHLKFKLLPETLYLTVNIIDRYLSKKQ-VPRKKL 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 20976872 334 QLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDC 384
Cdd:cd20507  80 QLVGVTALLIASKYEEIYPPEIKDFVYITDNAYTREEILQMERDILKTLDF 130
COG5024 COG5024
Cyclin [Cell division and chromosome partitioning];
232-515 6.52e-54

Cyclin [Cell division and chromosome partitioning];


Pssm-ID: 227357 [Multi-domain]  Cd Length: 440  Bit Score: 188.45  E-value: 6.52e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 232 LSSKRLAGIEDIDANDKENLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETF 311
Cdd:COG5024 155 ESKRESQSWQDLDATDQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETL 234

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 312 QLAVAIIDRYL--QVVKDTKrtyLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDCNLSRP 389
Cdd:COG5024 235 FLAINIIDRFLssRVVSLEK---YQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWP 311

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 390 LPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYS- 468
Cdd:COG5024 312 SPMSFLRRISKASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQN----------QWDRTLIHYSg 381

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 20976872 469 RYSAAHLRPITRLIAKLaRDAPQAKLKAIYNKYQGSKFQKIALRTEL 515
Cdd:COG5024 382 NYTNPDLKPLNESNKEN-LQNPSVHHDAIFPKYPSPTFGKASSPTGE 427
CYCLIN_CCNB1-like_rpt2 cd20509
second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two ...
 389-509 3.91e-53

second cyclin box found in cyclin-B1 (CCNB1)-like family; The CCNB1-like family includes two B-type cyclins, CCNB1 and CCNB2, both of which are essential for the control of the cell cycle at the G2/M (mitosis) transition. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410213  Cd Length: 111  Bit Score: 175.49  E-value: 3.91e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLngnhragtgfNDRHWTPTLTFYS 468
Cdd:cd20509   1 PLPLHFLRRFSKAGGADAQKHTLAKYLMELTLLDYDMVHYKPSEIAAAALCLSRKIL----------DEPEWTPTLEHYS 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKI 509
Cdd:cd20509  71 TYSEEDLLPIVQKMAKLVVKSQTSKYQAVKNKYSSSKFMRI 111
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 260-387 2.67e-51

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 171.16  E-value: 2.67e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872   260 DIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVvKDTKRTYLQLVGVT 339
Cdd:pfam00134   1 DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLDRFLSK-KSVPKNKLQLVGVT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 20976872   340 ALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDCNLS 387
Cdd:pfam00134  80 CLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILETLNFDLS 127
CYCLIN_CCNB1_rpt1 cd20565
first cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1); CCNB1 is essential for the ...
 255-383 3.94e-50

first cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1); CCNB1 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for embryo development. Over-expression of human CCNB1 has been found in numerous cancers and has been associated with tumor aggressiveness. CCNB1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410268 [Multi-domain]  Cd Length: 129  Bit Score: 168.13  E-value: 3.94e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 255 SEYVNDIYDYLYQVELEQPIHKDHLAGQkEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTyLQ 334
Cdd:cd20565   2 SEYVKDIYAYLRQLEEEQAVRPKYLEGQ-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVAIIDRFLQNNPVPKKM-LQ 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 20976872 335 LVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAID 383
Cdd:cd20565  80 LVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALD 128
CYCLIN_AtCycB-like_rpt1 cd20567
first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; ...
 240-378 4.94e-49

first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; Plant B-type cyclins (CycBs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycBs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410270  Cd Length: 147  Bit Score: 165.98  E-value: 4.94e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 240 IEDIDANDKENLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIID 319
Cdd:cd20567   4 LPDIDEVDKNNPLAAVEYVEDIYSFYRKVEPESCVPPYYMSQQPDINEKMRAILIDWLIEVHLKFELMPETLYLTVNLID 83

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 20976872 320 RYLQvVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQI 378
Cdd:cd20567  84 RFLS-VKQVPRKELQLVGVTAMLIASKYEEIWAPEVNDFVYISDNAYTRKQILVMEKTM 141
CYCLIN_CCNB2_rpt1 cd20566
first cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 is ...
 253-383 1.24e-47

first cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for progression through meiosis. CCNB2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410269 [Multi-domain]  Cd Length: 133  Bit Score: 161.95  E-value: 1.24e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 253 LVSEYVNDIYDYLYQVELEQPIHKDHLAGQkEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVvKDTKRTY 332
Cdd:cd20566   4 LCSDYVKDIYQYLRQLEVQQSIRPHYLDGK-EINERMRAILVDWLVQVHSRFQLLQETLYMCVAIMDRFLQV-QPVSRKK 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 20976872 333 LQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAID 383
Cdd:cd20566  82 LQLVGVTALLLASKYEEMYSPEIGDFVYITDNAYTKAQIREMEMLILKELN 132
CYCLIN_CCNB3_rpt1 cd20508
first cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 is ...
 242-384 4.73e-45

first cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 is a mitotic B-type cyclin that promotes the metaphase-anaphase transition. It controls anaphase onset independent of spindle assembly checkpoint in meiotic oocytes. CCNB3 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410212 [Multi-domain]  Cd Length: 142  Bit Score: 155.10  E-value: 4.73e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 242 DIDANDKENLVLVSEYVNDIYDYLYQVELEQPIhKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRY 321
Cdd:cd20508   1 DIDEENSDDPFQVSEYAKDIFDYMKEREEKFVV-PDYLEKQTELTPSMRAILVDWLVEVQENFELNHETLYLAVKLVDLY 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 20976872 322 LqVVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAIDC 384
Cdd:cd20508  80 L-SKKVVKKEKLQLLGATAILIASKFDERCPPCVDDFLYICDDAYTREELLKMEREILKTLDF 141
CYCLIN_CCNA_rpt1 cd20504
first cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, ...
 256-380 7.17e-44

first cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, CCNA1 and CCNA2. CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. Members in this family contain two cyclin boxes. The model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410208 [Multi-domain]  Cd Length: 128  Bit Score: 151.63  E-value: 7.17e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 256 EYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVkDTKRTYLQL 335
Cdd:cd20504   1 EYADDIYEYLRESELKHRPKPDYMRKQPDINPSMRSILVDWLVEVAEEYKLVPETLYLAVNYIDRFLSQM-SVLRSKLQL 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 20976872 336 VGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFK 380
Cdd:cd20504  80 VGTACMFIAAKYEEIYPPEVEEFVYITDDTYTKKQVLRMEHLVLK 124
CYCLIN_CLBs_yeast_rpt1 cd20568
first cyclin box found in yeast B-type cyclins; This subfamily includes Saccharomyces ...
 252-383 9.47e-44

first cyclin box found in yeast B-type cyclins; This subfamily includes Saccharomyces cerevisiae G2/mitotic-specific cyclins 1-4 (ScCLB1-4), S-phase entry cyclins 5-6 (ScCLB5-6), and Schizosaccharomyces pombe G2/mitotic-specific cyclins, cig1, cig2 and cdc13. ScCLB1-4 are essential for the control of the cell cycle at the G2/M (mitosis) transition. They interact with the CDC2 protein kinase to form maturation promoting factor (MPF). ScCLB5-6 interact with CDC28 and are involved in DNA replication in Saccharomyces cerevisiae. ScCLB5 is required for efficient progression through S phase and possibly for the normal progression through meiosis. ScCLB6 is involved in G1/S and or S phase progression. Cig1 is required for efficient passage of the G1/S transition. Cig2 and cdc13 are essential for the control of the cell cycle at the G2/M and G1/S (mitosis) transitions. They interact with the cdc2 protein kinase to form MPF. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410271  Cd Length: 134  Bit Score: 151.29  E-value: 9.47e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 252 VLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYL--QVVKDTK 329
Cdd:cd20568   3 LMVAEYVPEIFEYLRELELKTLPNPNYMDDQKELRWKMRGILVDWLVEVHEKFRLLPETLFLAVNIIDRFLskRVVSLNK 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 20976872 330 rtyLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAID 383
Cdd:cd20568  83 ---LQLVGISALFIASKYEEVNSPSIKNFAYMTDGAYTVEDILRAERYMLNTLE 133
Cyclin_C pfam02984
Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 389-515 4.35e-40

Cyclin, C-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain.


Pssm-ID: 397230  Cd Length: 119  Bit Score: 141.22  E-value: 4.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872   389 PLPIHFLRRYSKAAGAED--EHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHragtgfndrhWTPTLTF 466
Cdd:pfam02984   1 PTPLSFLRRFSKAADYLHdlELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLNSPE----------WTETLEH 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 20976872   467 YSRYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKIALRTEL 515
Cdd:pfam02984  71 YTGYSEEDLKPCVKLLLELLLNAPSSKLQAVRRKYSSSKFMKVSTLPPL 119
CYCLIN_AtCycA_like_rpt1 cd20562
first cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; ...
 253-382 4.14e-35

first cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; Plant A-type cyclins (CycAs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycAs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410265  Cd Length: 136  Bit Score: 128.30  E-value: 4.14e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 253 LVSEYVNDIYDYLYQVELEQ-PIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVvKDTKRT 331
Cdd:cd20562   4 MCSLYATDIYLNLRVAELKRrPLPDYMEKIQRDITPSMRGILVDWLVEVAEEYKLVPDTLYLTVSYIDRFLSG-NYVNRQ 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 20976872 332 YLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAI 382
Cdd:cd20562  83 RLQLLGVSCMLIASKYEEICAPQVEEFCYITDNTYTKQEVLEMEIDVLNAL 133
CYCLIN_CCNA2_rpt1 cd20561
first cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1/S ...
 254-382 2.53e-34

first cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. It is significantly over-expressed in various cancer types, and can be used as a prognostic biomarker for estrogen receptor positive (ER+) breast cancer and tamoxifen resistance. CCNA2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410264 [Multi-domain]  Cd Length: 131  Bit Score: 125.94  E-value: 2.53e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 254 VSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYL 333
Cdd:cd20561   1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS-VLRGKL 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 20976872 334 QLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAI 382
Cdd:cd20561  80 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVL 128
CYCLIN_CCNE_rpt1 cd20519
first cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two ...
 288-383 6.35e-33

first cyclin box found in G1/S-specific cyclin-E (CCNE) family; The CCNE family includes two E-type cyclins, CCNE1 and CCNE2. CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form a serine/threonine kinase holoenzyme complexes. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410223  Cd Length: 131  Bit Score: 122.04  E-value: 6.35e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 288 KMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYT 367
Cdd:cd20519  35 RMRAILLDWLMEVCEVYRLHRETFYLAVDFVDRYLSTQTNVPKTQLQLIGITCLFIAAKLEEIYPPKLSEFAYVTDGACT 114

                        90
                ....*....|....*.
gi 20976872 368 ARQIRQMELQIFKAID 383
Cdd:cd20519 115 EDEILTMELIILKALN 130
CYCLIN_CCNA1_rpt1 cd20560
first cyclin box found in cyclin-A1 (CCNA1); CCNA1 may primarily function in the control of ...
 241-382 7.64e-32

first cyclin box found in cyclin-A1 (CCNA1); CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410263  Cd Length: 163  Bit Score: 120.33  E-value: 7.64e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 241 EDIDANDKENLVLVSEYVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDR 320
Cdd:cd20560  20 SEDDSAADVDVLAVPEYAEDIHQYLREAELKHRPKPGYMRKQPDITTGMRTILVDWLVEVGEEYKLQTETLYLAVNYLDR 99

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 20976872 321 YLQVVKdTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTARQIRQMELQIFKAI 382
Cdd:cd20560 100 FLSCMS-VLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKKQLLRMEHLLLKVL 160
CYCLIN_CCNO_rpt1 cd20536
first cyclin box found in cyclin-O (CCNO) and similar proteins; CCNO is specifically required ...
 289-382 6.49e-29

first cyclin box found in cyclin-O (CCNO) and similar proteins; CCNO is specifically required for generation of multiciliated cells, possibly by promoting a cell cycle state compatible with centriole amplification and maturation. It acts downstream of MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein) to promote mother centriole amplification and maturation in preparation for apical docking. CCNO is involved in the activation of cyclin-dependent kinase 2. CCNO contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410239  Cd Length: 93  Bit Score: 109.72  E-value: 6.49e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 289 MRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDtKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTA 368
Cdd:cd20536   1 MRAKLISWLIPVHRHFNLSQETLFLAVNILDRFLATTPV-ARDCFQLLGVTSLLIACKQEEIYPPEVKDLLALCCGAYTR 79

                        90
                ....*....|....
gi 20976872 369 RQIRQMELQIFKAI 382
Cdd:cd20536  80 EQICNLECIILTKL 93
CYCLIN_CCNB3_rpt2 cd20510
second cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 ...
 389-511 5.57e-28

second cyclin box found in G2/mitotic-specific cyclin-B3 (CCNB3) and similar proteins; CCNB3 is a mitotic B-type cyclin that promotes the metaphase-anaphase transition. It controls anaphase onset independent of spindle assembly checkpoint in meiotic oocytes. CCNB3 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410214  Cd Length: 115  Bit Score: 107.75  E-value: 5.57e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLlngnhragtgFNDRHWTPTLTFYS 468
Cdd:cd20510   1 PLSYRFLRRYAKCARASMETLTLARYILELSLMEYQFVQERASKLAAAALLLALKM----------KNLGEWTPTLEYYS 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKIAL 511
Cdd:cd20510  71 GYSAEDLLPLVRKLNAMLTKPPNKKLKTVRSKYSHKVFFEVAK 113
CYCLIN_CCNB2_rpt2 cd20570
second cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 ...
 389-515 1.33e-27

second cyclin box found in G2/mitotic-specific cyclin-B2 (CCNB2) and similar proteins; CCNB2 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for progression through meiosis. CCNB2 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410273  Cd Length: 119  Bit Score: 106.89  E-value: 1.33e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYS 468
Cdd:cd20570   1 PLPLHFLRRASKAGSADVEKHTLAKYLMELTLIDYDMVHYHPSEIAAAALCLSQKVLDGG----------KWSLTQQYYT 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLK--AIYNKYQGSKFQKIALRTEL 515
Cdd:cd20570  71 GYTEDDLKPIMQHMAKNVVKVNEGLTKhvAVKNKYASSKLMKISTIPQL 119
CYCLIN_AtCycB-like_rpt2 cd20511
second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; ...
 389-511 1.96e-27

second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins; Plant B-type cyclins (CycBs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycBs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410215  Cd Length: 117  Bit Score: 106.62  E-value: 1.96e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHRagtgfndrhWTPTLTFYS 468
Cdd:cd20511   1 PTPYVFLVRFLKAAQSDKKLENLAFFLVELGLVEYEMLKYSPSMLAASAVYTARCTLNKTPE---------WTSTLEFHT 71

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKIAL 511
Cdd:cd20511  72 GYSESQLMECARLMVRLHSKAGTGKLTAVYKKYSSSKFGAVAL 114
CYCLIN_CNTD2 cd20542
cyclin box found in Cyclin N-terminal domain-containing protein 2 (CNTD2) and similar proteins; ...
 290-386 2.54e-26

cyclin box found in Cyclin N-terminal domain-containing protein 2 (CNTD2) and similar proteins; CNTD2 is an atypical cyclin upregulated in human cancer tissues. It promotes cell proliferation and migration, as well as increases tumor growth in vivo. It can function as a prognostic factor and drug target. CNTD2 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410245 [Multi-domain]  Cd Length: 96  Bit Score: 102.78  E-value: 2.54e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 290 RAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYlQLVGVTALFIATKYEELFPPAIGDFVFITDDTYTAR 369
Cdd:cd20542   1 RAILVDWLVQVQEHLELSTQTLHLAVALLDRYLSRQKISLSLL-QLLGITCLFIACKFEERFPPEVATLCYLTDDSYSKK 79

                        90
                ....*....|....*..
gi 20976872 370 QIRQMELQIFKAIDCNL 386
Cdd:cd20542  80 QVLRMERRVLRRLRFDL 96
CYCLIN_CCNB1_rpt2 cd20569
second cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1) and similar proteins; CCNB1 ...
 389-515 7.21e-26

second cyclin box found in G2/mitotic-specific cyclin-B1 (CCNB1) and similar proteins; CCNB1 is essential for the control of the cell cycle at the G2/M (mitosis) transition. It is required for embryo development. Over-expression of human CCNB1 has been found in numerous cancers and has been associated with tumor aggressiveness. CCNB1 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410272  Cd Length: 121  Bit Score: 102.28  E-value: 7.21e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYS 468
Cdd:cd20569   1 PLPLHFLRRASKIGEVDVEQHTLAKYLMELTMVDYDMVHFPPSQIAAAAFCLALKILDNG----------EWTPTLQHYM 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 20976872 469 RYSAAHLRPITRLIAKLARDAPQAKLK--AIYNKYQGSKFQKIALRTEL 515
Cdd:cd20569  71 SYTEESLLPVMQHMAKNVVKVNQGLTKhmTVKNKYASSKQMKISTLPQL 119
CYCLIN_AtCycA-like_rpt2 cd20506
second cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; ...
 394-506 1.24e-24

second cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins; Plant A-type cyclins (CycAs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycAs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410210  Cd Length: 111  Bit Score: 98.47  E-value: 1.24e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 394 FLRRYSKAAGAEDEHHTM---SKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNgnhragtgfndRH-WTPTLTFYSR 469
Cdd:cd20506   6 FLRRFLRAAQASVPDLKLeflANYLAELSLLDYEFLKYLPSLIAASAVFLARHTLN-----------PHpWNPTLEHYTG 74

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 20976872 470 YSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKF 506
Cdd:cd20506  75 YKAADLKPCVQALHDLQLNASGSSLQAVREKYKQHKF 111
CYCLIN_CCNE1_rpt1 cd20579
first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control ...
 288-383 2.08e-24

first cyclin box found in G1/S-specific cyclin-E1 (CCNE1); CCNE1 is essential for the control of the cell cycle at the G1/S (start) transition. It interacts with CDK2 protein kinase to form a serine/threonine kinase holoenzyme complex. CCNE1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410282 [Multi-domain]  Cd Length: 137  Bit Score: 98.80  E-value: 2.08e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 288 KMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYT 367
Cdd:cd20579  41 KMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRFMATQENVVKTRLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACT 120

                        90
                ....*....|....*.
gi 20976872 368 ARQIRQMELQIFKAID 383
Cdd:cd20579 121 EDEILSMELIIMKALK 136
CYCLIN_CCNE2_rpt1 cd20580
first cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control ...
 288-382 1.05e-23

first cyclin box found in G1/S-specific cyclin-E2 (CCNE2); CCNE2 is essential for the control of the cell cycle at the late G1 and early S phase. It interacts with the CDK2 (in vivo) and CDK3 (in vitro) protein kinases to form a serine/threonine kinase holoenzyme complexes. CCNE2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410283 [Multi-domain]  Cd Length: 137  Bit Score: 96.84  E-value: 1.05e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 288 KMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTYT 367
Cdd:cd20580  41 KMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKNINKSMLQLIGITSLFIASKLEEIYPPKLHEFAYVTDGACS 120

                        90
                ....*....|....*
gi 20976872 368 ARQIRQMELQIFKAI 382
Cdd:cd20580 121 EDDILDMELIILKAL 135
CYCLIN_CCNO-like_rpt2 cd20537
second cyclin box found in cyclin-O (CCNO) and similar proteins; This subfamily is composed of ...
 389-487 1.48e-22

second cyclin box found in cyclin-O (CCNO) and similar proteins; This subfamily is composed of CCNO and similar proteins including Schizosaccharomyces pombe meiosis-specific cyclin rem1, Drosophila melanogaster G2/mitotic-specific cyclin-A (CCNA), and Candida albicans G1/S-specific cyclin CCN1, among others. Rem1 is required for pre-meiotic DNA synthesis and S phase progression. CCNA is essential for the control of the cell cycle at the G2/M (mitosis) transition. CCN1 is essential for the control of the cell cycle at the G1/S (start) transition and for maintenance of filamentous growth. CCNO is specifically required for generation of multiciliated cells, possibly by promoting a cell cycle state compatible with centriole amplification and maturation. It is involved in the activation of cyclin-dependent kinase 2. Members of this subfamily contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410240 [Multi-domain]  Cd Length: 91  Bit Score: 91.99  E-value: 1.48e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNgnhragtgfNDRHWTPTLTFYS 468
Cdd:cd20537   1 PTPLSFLRRYLSLLGLDEKVRHLARYLLELSLLDYEFLKYRPSLIAAAALYLARKILG---------EPPPSPQLLQLVT 71

                        90
                ....*....|....*....
gi 20976872 469 RYSAAHLRPITRLIAKLAR 487
Cdd:cd20537  72 GYSENDLQECAKELLELLA 90
CYCLIN_CLBs_yeast_rpt2 cd20512
second cyclin box found in yeast B-type cyclins; The family includes Saccharomyces cerevisiae ...
 391-511 7.72e-22

second cyclin box found in yeast B-type cyclins; The family includes Saccharomyces cerevisiae G2/mitotic-specific cyclins 1-4 (ScCLB1-4), S-phase entry cyclins 5-6 (ScCLB5-6), and Schizosaccharomyces pombe G2/mitotic-specific cyclins, cig1, cig2 and cdc13. ScCLB1-4 are essential for the control of the cell cycle at the G2/M (mitosis) transition. They interact with the CDC2 protein kinase to form maturation promoting factor (MPF). ScCLB5-6 interact with CDC28 and are involved in DNA replication in Saccharomyces cerevisiae. ScCLB5 is required for efficient progression through S phase and possibly for the normal progression through meiosis. ScCLB6 is involved in G1/S and or S phase progression. Cig1 is required for efficient passage of the G1/S transition. Cig2 and cdc13 are essential for the control of the cell cycle at the G2/M and G1/S (mitosis) transition. They interact with the cdc2 protein kinase to form MPF. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410216  Cd Length: 116  Bit Score: 90.75  E-value: 7.72e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 391 PIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYSRY 470
Cdd:cd20512   2 PMNFLRRISKADDYDIQTRTLAKYLLEITILDHRFLGYPPSLLAAAAMYLARKMLGRG----------DWNDNLVHYSGY 71

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 20976872 471 SAAHLRPITRLIAKLARDAPQAkLKAIYNKYQGSKFQKIAL 511
Cdd:cd20512  72 TESQLIPCADIMLEYLVKPIKH-HDAFFKKYSSKKFLKASI 111
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 295-380 2.46e-17

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 76.86  E-value: 2.46e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872    295 DWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRtYLQLVGVTALFIATKYEELFPPAIGDFVFITDdtYTARQIRQM 374
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKY-SPSLIAAAALYLASKTEETPPWTKELVHYTGY--FTEEEILRM 77


                   ....*.
gi 20976872    375 ELQIFK 380
Cdd:smart00385  78 ERLLLE 83
CYCLIN_CCND_rpt1 cd20515
first cyclin box found in cyclin-D (CCND) family; The CCND family includes three ...
 282-378 5.67e-16

first cyclin box found in cyclin-D (CCND) family; The CCND family includes three mitogen-induced D-type cyclins, CCND1, CCND2 and CCND3, which function as regulatory subunits of the cyclin-dependent kinases CDK4 and CDK6, that drive progression through the G1 phase of the cell cycle. Members in this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410219  Cd Length: 150  Bit Score: 75.03  E-value: 5.67e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 282 QKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVkDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFI 361
Cdd:cd20515  48 QTEIQPFMRKMVTTWMLEVCEEQNCEEEVFPLAVNYLDRFLSLV-PIRKSQLQLLGAVCLFLASKLKETIPLTAEKLCIY 126

                        90
                ....*....|....*..
gi 20976872 362 TDDTYTARQIRQMELQI 378
Cdd:cd20515 127 TDNSITLQELLDWELLV 143
CYCLIN_CCNF_rpt1 cd20521
first cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, also ...
 287-382 1.09e-15

first cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, also termed F-box only protein 1 (FBXO1), is a substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of CP110 during G2 phase, thereby acting as an inhibitor of centrosome reduplication. It is the largest among all cyclins and oscillates in the cell cycle like other cyclins. CCNF contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410225  Cd Length: 95  Bit Score: 72.35  E-value: 1.09e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 287 HKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFITDDTY 366
Cdd:cd20521   1 DTMRYILVDWLVEVATMKDFSSLTLHVAVSCVDRYLMVRK-VPRSKLQLLGIACMVIATRFLGKDILTIREAAWLTDNTY 79

                        90
                ....*....|....*.
gi 20976872 367 TARQIRQMELQIFKAI 382
Cdd:cd20521  80 KYEDVVRMMGEIVAAL 95
CYCLIN_CCNA_rpt2 cd20505
second cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, ...
 394-507 2.50e-14

second cyclin box found in cyclin-A (CCNA) family; The CCNA family includes two A-type cyclins, CCNA1 and CCNA2. CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410209 [Multi-domain]  Cd Length: 110  Bit Score: 69.24  E-value: 2.50e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 394 FLRRYSKAAGAEDEHHTMSKYFIELASVDYE-MATYRPSEIAAASLFLSLHLLNGnhragtgfndRHWTPTLTFYSRYSA 472
Cdd:cd20505   6 FLERFLKHSNADEKTKSLAMYLCELSLIDADpYLKYLPSVIAAAAVCLANHTLGN----------EVWPQKLARSTGYSL 75

                        90       100       110
                ....*....|....*....|....*....|....*
gi 20976872 473 AHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQ 507
Cdd:cd20505  76 EDLLPCLRDLHRTFLNAPSSPQQAIREKYKSSKYH 110
CYCLIN smart00385
domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and ...
 393-484 4.71e-14

domain present in cyclins, TFIIB and Retinoblastoma; A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.


Pssm-ID: 214641 [Multi-domain]  Cd Length: 83  Bit Score: 67.62  E-value: 4.71e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872    393 HFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNhragtgfndrHWTPTLTFYSRY-S 471
Cdd:smart00385   1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLASKTEETP----------PWTKELVHYTGYfT 70

                           90
                   ....*....|...
gi 20976872    472 AAHLRPITRLIAK 484
Cdd:smart00385  71 EEEILRMERLLLE 83
CYCLIN_CCND1_rpt1 cd20573
first cyclin box found in G1/S-specific cyclin-D1 (CCND1); CCND1, also called B-cell lymphoma ...
 282-376 2.26e-13

first cyclin box found in G1/S-specific cyclin-D1 (CCND1); CCND1, also called B-cell lymphoma 1 protein (BCL-1), or BCL-1 oncogene, or PRAD1 oncogene, is a regulatory component of the cyclin D1-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1. The complex also regulates the cell-cycle during G(1)/S transition. It is an important cell cycle regulatory protein involved in carcinogenesis of various human cancers. CCND1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410276  Cd Length: 149  Bit Score: 67.70  E-value: 2.26e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 282 QKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVvKDTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFI 361
Cdd:cd20573  47 QKEILPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSV-EPTKKSRLQLLGATCMFLASKMKETIPLTAEKLCIY 125

                        90
                ....*....|....*
gi 20976872 362 TDDTYTARQIRQMEL 376
Cdd:cd20573 126 TDNSIRPEELLQMEL 140
CYCLIN_ScCLN_like cd20559
cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclins (ScCLNs) and similar ...
 293-383 1.06e-12

cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclins (ScCLNs) and similar proteins; ScCLNs, including ScCLN1-3, are essential for the control of the cell cycle at the G1/S (start) transition in Saccharomyces. ScCLN1 and ScCLN2 interact with the CDC28 protein kinase to form maturation promoting factor (MPF). ScCLN3 may be an upstream activator of the G1 cyclins that directly initiate G1/S transition. This family also includes Schizosaccharomyces pombe cyclin puc1, which contributes to negative regulation of the timing of sexual development in fission yeast, and functions at the transition between cycling and non-cycling cells. It interacts with protein kinase A. Members of this family contain one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410262 [Multi-domain]  Cd Length: 95  Bit Score: 63.94  E-value: 1.06e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 293 LIDWINEVHLQFHLAAETFQLAVAIIDRYLQvVKDTKRTYLQLVGVTALFIATKYEELFP--PAIGDFVFITDDTYTARQ 370
Cdd:cd20559   2 LLDFLFELHVELRLSPQTFFLSVNLIDRYCS-KRIVLKKHYQLVGCTCLWIASKFWESKArvPLLSELSKMCCNSYGEEL 80

                        90
                ....*....|...
gi 20976872 371 IRQMELQIFKAID 383
Cdd:cd20559  81 FIQMEMHILNTLN 93
CYCLIN_CCND3_rpt1 cd20575
first cyclin box found in G1/S-specific cyclin-D3 (CCND3) and similar proteins; CCND3 is a ...
 282-379 2.41e-12

first cyclin box found in G1/S-specific cyclin-D3 (CCND3) and similar proteins; CCND3 is a regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1, and regulates the cell-cycle during G(1)/S transition. In skeletal muscle, CCND3 plays a unique function in controlling the proliferation/differentiation balance of myogenic progenitor cells. CCND3 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410278  Cd Length: 150  Bit Score: 64.63  E-value: 2.41e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 282 QKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFI 361
Cdd:cd20575  48 QREIKPYMRKMLAYWMLEVCEEQKCEEEVFPLAMNYVDRYLSCVP-TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY 126

                        90
                ....*....|....*...
gi 20976872 362 TDDTYTARQIRQMELQIF 379
Cdd:cd20575 127 TDNSISPRQLLDWEILVL 144
CYCLIN_CCNI-like cd20526
cyclin box found in cyclin-I (CCNI) and similar proteins; CCNI is an atypical cyclin because ...
 294-375 9.65e-12

cyclin box found in cyclin-I (CCNI) and similar proteins; CCNI is an atypical cyclin because it is most abundant in post-mitotic cells. It is involved in various biological processes, such as cell survival, angiogenesis, cell differentiation, and cell cycle progression. CCNI contains a typical cyclin box near the N-terminus and a PEST sequence near the C-terminus. The cyclin box is a protein binding domain.


Pssm-ID: 410230  Cd Length: 99  Bit Score: 61.56  E-value: 9.65e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 294 IDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIA--TKYEELFPPAIGDFVFITDDTYTARQI 371
Cdd:cd20526   6 VRWLAELNSQFKFYPETFALAVSILDRFLASVK-ARPKYLRCIAISCLFLAakTNEEDEVIPSTKDLVRVSKCGCSVAEV 84


                ....
gi 20976872 372 RQME 375
Cdd:cd20526  85 LRME 88
CYCLIN_SF cd00043
Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in ...
 293-377 5.71e-11

Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in cell-cycle and transcriptional control. It is about 100 amino acids in length, composed of five helices, and is present in cyclins, transcription initiation factor IIB (TFIIB), and retinoblastoma tumour suppressor protein (Rb). Cyclins consist of 8 classes of cell cycle regulators that function as regulatory subunits of cyclin-dependent kinases (CDKs), which are serine/threonine kinases. The catalytic activities of CDKs are modulated not only by their interactions with cyclins but also by CDK inhibitors (CKIs). CDKs, cyclins and CKIs play key roles in transcription, epigenetic regulation, metabolism, stem cell self-renewal, neuronal functions, and spermatogenesis. TFIIB is a transcription factor that binds the TATA box. Members in this superfamily contain one or two copies of the cyclin box.


Pssm-ID: 410207 [Multi-domain]  Cd Length: 82  Bit Score: 58.58  E-value: 5.71e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 293 LIDWINEVHLQFHLAAETFQLAVAIIDRYLQvVKDTKRTYLQLVGVTALFIATKYEElFPPAIGDFVFITDdtYTARQIR 372
Cdd:cd00043   2 AVDFIRRLCSKLGLPEEVLELAIELLDRFLS-KGLLLGRSPELIAAACLYLACKLEE-LPRTLKEIAKVSG--VSEKELR 77


                ....*
gi 20976872 373 QMELQ 377
Cdd:cd00043  78 KAEKE 82
CYCLIN_CCNJ-like_rpt1 cd20528
first cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ ...
 288-383 1.48e-10

first cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ and CCNJ-like. CCNJ may regulate the cell cycle or transcription. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410231 [Multi-domain]  Cd Length: 103  Bit Score: 58.00  E-value: 1.48e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 288 KMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTyLQLVGVTALFIATKYEELFP--PAIGDFVFITD-D 364
Cdd:cd20528   5 HLRRYLVDWLAVVSERLKLSDTTLHLAVYLLDRFMDRYDISEDQ-LHLVALTCLLLAAKFEELDDniPKISDLNRYLCnS 83

                        90
                ....*....|....*....
gi 20976872 365 TYTARQIRQMELQIFKAID 383
Cdd:cd20528  84 VYSKQEYLQMELLILEFFQ 102
CYCLIN_CCND2_rpt1 cd20574
first cyclin box found in G1/S-specific cyclin-D2 (CCND2); CCND2 is a regulatory component of ...
 282-385 2.43e-10

first cyclin box found in G1/S-specific cyclin-D2 (CCND2); CCND2 is a regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family, including RB1, and regulates the cell-cycle during G(1)/S transition. It is a critical mediator of exercise-induced cardiac hypertrophy. It also acts as a regulator of cell cycle proteins affecting SAMHD1-mediated HIV-1 restriction in non-proliferating macrophages. CCND2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410277  Cd Length: 150  Bit Score: 58.85  E-value: 2.43e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 282 QKEVSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIATKYEELFPPAIGDFVFI 361
Cdd:cd20574  48 QKDIQPFMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAVVP-TRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIY 126

                        90       100
                ....*....|....*....|....
gi 20976872 362 TDDTYTARQIRQMELQIFKAIDCN 385
Cdd:cd20574 127 TDNSIKPQELLEWELVVLGKLKWN 150
CYCLIN_vCyC_rpt1 cd20517
first cyclin box found in viral cyclin (v-cyclin); v-Cyclin modulates host cell cycle ...
 285-382 8.90e-08

first cyclin box found in viral cyclin (v-cyclin); v-Cyclin modulates host cell cycle progression and apoptotic signaling pathways. It forms an active kinase complex with cellular CDK6, a cellular cyclin-dependent kinase known to interact with cellular type D cyclins. v-Cyclin belongs to Cyclin D subfamily. It contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410221  Cd Length: 99  Bit Score: 50.25  E-value: 8.90e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 285 VSHKMRAVLIDWINEVHLQFHLAAETFQLAVAIIDRYLQVVKDTKRTYlQLVGVTALFIATKYEELFPPAIGDFVFITDD 364
Cdd:cd20517   1 VTSDNRKILLTWMFLVCESFELDKNVFPLAVSLLDRLLLKKQGTKETL-QKTGAACLLIASKIRTVKPITVSKLTYLSCD 79

                        90
                ....*....|....*...
gi 20976872 365 TYTARQIRQMELQIFKAI 382
Cdd:cd20517  80 CFTNLELINQEKDILEAL 97
CYCLIN_AtCycD-like_rpt1 cd20543
first cyclin box found in plant cyclin-delta family; This subfamily is composed of plant delta ...
 294-383 1.93e-07

first cyclin box found in plant cyclin-delta family; This subfamily is composed of plant delta family cyclins, including a group of G1/S-specific D-type cyclins from Arabidopsis thaliana which may activate the cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.


Pssm-ID: 410246  Cd Length: 99  Bit Score: 49.24  E-value: 1.93e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 294 IDWINEVHLQFHLAAETFQLAVAIIDRYLQVV--KDTKRTYLQLVGVTALFIATKYEELFPPAIGDF-VFITDDTYTARQ 370
Cdd:cd20543   6 IDWILKVRSRYGFGPLTAYLAVNYLDRFLSSYdlPKDKPWMLQLLAVACLSLAAKMEETDVPLLVDLqVEEPKYVFEAKT 85

                        90
                ....*....|...
gi 20976872 371 IRQMELQIFKAID 383
Cdd:cd20543  86 IQRMELLVLSTLE 98
CYCLIN_CCNA1_rpt2 cd20563
second cyclin box found in cyclin-A1 (CCNA1) and similar proteins; CCNA1 may primarily ...
 394-511 3.00e-07

second cyclin box found in cyclin-A1 (CCNA1) and similar proteins; CCNA1 may primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells. CCNA1 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410266  Cd Length: 123  Bit Score: 49.42  E-value: 3.00e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 394 FLRRYSKAAGAEDEHHTMSKYFIELASVDYE-MATYRPSEIAAASLFLSLHLLNGNHragtgfndrhWTPTLTFYSRYSA 472
Cdd:cd20563   6 FLLQYLKRHEVCEKTENLAMYVAELSLLEVDpFLKYLPSLTAAAAYCLANYTVNKVF----------WPETLAAFTGYSL 75

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 20976872 473 AHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKFQKIAL 511
Cdd:cd20563  76 SEIVPCLSDLHKACLGAPHRPQQAIREKYKGSKYMQVSL 114
CYCLIN_CCNF_rpt2 cd20522
second cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, ...
 414-510 5.05e-07

second cyclin box found in G2/mitotic-specific cyclin-F (CCNF) and similar proteins; CCNF, also termed F-box only protein 1 (FBXO1), is a substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of CP110 during G2 phase, thereby acting as an inhibitor of centrosome reduplication. It is the largest among all cyclins and oscillates in the cell cycle like other cyclins. CCNF contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410226  Cd Length: 112  Bit Score: 48.39  E-value: 5.05e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 414 YFIELASVDYEMATYRPSEIAAASLFLSLHLLNgnhragtgfNDRHWTPTLTFYSRYSAAHLRPITRLIAK--LARDAP- 490
Cdd:cd20522   5 YICELSLLHTELGRYSPAVIAASCLLLARVLLN---------QALPWPSQLEEFTGFSLEDLLSCVLHLHKkcFHEDSPk 75

                        90       100
                ....*....|....*....|...
gi 20976872 491 ---QAKLKAIYNKYQGSKFQKIA 510
Cdd:cd20522  76 dyrNVSLTAVKQRYEDERFLSIS 98
CYCLIN_CCNJ-like_rpt2 cd20529
second cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ ...
 391-482 1.36e-06

second cyclin box found in cyclin-J (CCNJ) family; The CCNJ family includes two cyclins, CCNJ and CCNJ-like. CCNJ may regulate the cell cycle or transcription. Members of this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410232 [Multi-domain]  Cd Length: 101  Bit Score: 46.97  E-value: 1.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 391 PIHFLRRY-SKAAGAEDEHHTMSK---------------YFIELASVDYEMATYRPSEIAAASLFLSLHLLNgnhragtg 454
Cdd:cd20529   3 PAHFLEYYlSQGVLFVDDHDGLPSellekvkeyvrkyadFFLDLSLQDYAFLNYKPSLLAAACIAAARKALG-------- 74

                        90       100
                ....*....|....*....|....*...
gi 20976872 455 fNDRHWTPTLTFYSRYSAAHLRPITRLI 482
Cdd:cd20529  75 -LSPTWPEELEKLTGYSEDELEPCVELL 101
CYCLIN_CCNG cd20523
cyclin box found in the cyclin-G (CCNG) family; The CCNG family includes two cyclins, CCNG1 ...
 304-375 1.72e-06

cyclin box found in the cyclin-G (CCNG) family; The CCNG family includes two cyclins, CCNG1 and CCNG2. CCNG1 is the only cyclin that has either positive or negative effects on cell growth. It is associated with G2/M phase arrest in response to DNA damage. It is also involved in the development of human carcinoma. CCNG2 may play a role in growth regulation and in negative regulation of cell cycle progression. It has been identified as a tumor suppressor in several cancers. Members of this family contain one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410227  Cd Length: 94  Bit Score: 46.19  E-value: 1.72e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20976872 304 FHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIATKY--EELFPPAIGDFVFITDDTYTARQIRQME 375
Cdd:cd20523  15 YGFSPETFALAVNLLDRFLSKVK-VKPKHLACITVSCFHIAIKSveEDQNIPSAEDLIRISQCGCTAADLMRME 87
CYCLIN_CCNA2_rpt2 cd20564
second cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1 ...
 389-506 1.61e-05

second cyclin box found in cyclin-A2 (CCNA2) and similar proteins; CCNA2 controls both the G1/S and the G2/M transition phases of the cell cycle. It is significantly overexpressed in various cancer types, and can be used as a prognostic biomarker for estrogen receptor positive (ER+) breast cancer and tamoxifen resistance. CCNA2 contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410267  Cd Length: 110  Bit Score: 44.05  E-value: 1.61e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 389 PLPIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYE-MATYRPSEIAAASLFLSLHLLNGnhragtgfndRHWTPTLTFY 467
Cdd:cd20564   1 PTINQFLTQYFLHQQANCKVESLSMFLGELSLIDADpYLKYLPSVIAAAAFHLALYTVTG----------QSWPESLVQK 70

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 20976872 468 SRYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKF 506
Cdd:cd20564  71 TGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKY 109
CYCLIN_CCNG2 cd20584
cyclin box found in cyclin-G2 (CCNG2) and similar proteins; CCNG2 may play a role in growth ...
 304-375 5.67e-05

cyclin box found in cyclin-G2 (CCNG2) and similar proteins; CCNG2 may play a role in growth regulation and in negative regulation of cell cycle progression. It has been identified as a tumor suppressor in several cancers. CCNG2 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410287  Cd Length: 96  Bit Score: 42.14  E-value: 5.67e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20976872 304 FHLAAETFQLAVAIIDRYLQVVKdTKRTYLQLVGVTALFIATKY--EELFPPAIGDFVFITDDTYTARQIRQME 375
Cdd:cd20584  16 FGFSTETFVLAVNILDRFLALMK-VKPKHLSCIGICCFHLAARVveEECNIPSSHDLIRISQCKCTVSDLKRME 88
CYCLIN_CCNG1 cd20583
cyclin box found in cyclin-G1 (CCNG1) and similar proteins; CCNG1 is the only cyclin that has ...
 304-375 1.13e-04

cyclin box found in cyclin-G1 (CCNG1) and similar proteins; CCNG1 is the only cyclin that has either positive or negative effects on cell growth. It is associated with G2/M phase arrest in response to DNA damage. It is also involved in the development of human carcinoma. CCNG1 contains one cyclin box. The cyclin box is a protein binding domain.


Pssm-ID: 410286  Cd Length: 98  Bit Score: 41.35  E-value: 1.13e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20976872 304 FHLAAETFQLAVAIIDRYLQVVKDTKRtYLQLVGVTALFIATKY--EELFPPAIGDFVFITDDTYTARQIRQME 375
Cdd:cd20583  16 FGFSTETFSLAVNLLDRFLAKMKVQPK-HLGCVGLSCFYLAVKAieEERNVPLATDLIRISQYRFTVSDMMRME 88
CYCLIN_SF cd00043
Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in ...
 391-446 1.19e-03

Cyclin box fold superfamily; The cyclin box is a protein binding domain that functions in cell-cycle and transcriptional control. It is about 100 amino acids in length, composed of five helices, and is present in cyclins, transcription initiation factor IIB (TFIIB), and retinoblastoma tumour suppressor protein (Rb). Cyclins consist of 8 classes of cell cycle regulators that function as regulatory subunits of cyclin-dependent kinases (CDKs), which are serine/threonine kinases. The catalytic activities of CDKs are modulated not only by their interactions with cyclins but also by CDK inhibitors (CKIs). CDKs, cyclins and CKIs play key roles in transcription, epigenetic regulation, metabolism, stem cell self-renewal, neuronal functions, and spermatogenesis. TFIIB is a transcription factor that binds the TATA box. Members in this superfamily contain one or two copies of the cyclin box.


Pssm-ID: 410207 [Multi-domain]  Cd Length: 82  Bit Score: 37.78  E-value: 1.19e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 20976872 391 PIHFLRRYSKAAGAEDEHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLN 446
Cdd:cd00043   2 AVDFIRRLCSKLGLPEEVLELAIELLDRFLSKGLLLGRSPELIAAACLYLACKLEE 57
CCL1 COG5333
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision ...
 296-446 1.64e-03

Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair];


Pssm-ID: 227640 [Multi-domain]  Cd Length: 297  Bit Score: 40.49  E-value: 1.64e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 296 WINEVHLQFHLAAETFQLAVAIIDRYlqVVKDTKRTY-LQLVGVTALFIATKYEElfppaigDFVFITDDTYTARQ---- 370
Cdd:COG5333  51 LIMDLCTRLNLPQTVLATAILFFSRF--YLKNSVEEIsLYSVVTTCVYLACKVED-------TPRDISIESFEARDlwse 121

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20976872 371 --------IRQMELQIFKAIDCNLSRPLPIHFLRRYSKAAGAED--EHHTMSKYFIELASVDYEMATYRPSEIAAASLFL 440
Cdd:COG5333 122 epkssrerILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDkyKLLQIAWKIINDALRTDLCLLYPPHIIALAALLI 201


                ....*.
gi 20976872 441 SLHLLN 446
Cdd:COG5333 202 ACEVLG 207
CYCLIN_CCND_rpt2 cd20516
second cyclin box found in cyclin-D (CCND) family; The CCND family includes three ...
 393-452 4.05e-03

second cyclin box found in cyclin-D (CCND) family; The CCND family includes three mitogen-induced D-type cyclins, CCND1, CCND2 and CCND3, which function as regulatory subunits of the cyclin-dependent kinases CDK4 and CDK6, that drive progression through the G1 phase of the cell cycle. Members in this family contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.


Pssm-ID: 410220  Cd Length: 98  Bit Score: 36.82  E-value: 4.05e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 20976872 393 HFLRRYSKAagaEDEHHTMSK---YFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHRAG 452
Cdd:cd20516   8 HILHRLPLD---SEDVDKVRKhaeTFIALCATDYKFSSYPPSMIAAASILAALRGLLLHSGNS 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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