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Conserved domains on  [gi|19547991|gb|AAL87359|]
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At1g69690/T6C23_11 [Arabidopsis thaliana]

Protein Classification

TCP family transcription factor( domain architecture ID 10508254)

TCP family transcription factor is a plant-specific transcription factor and may be involved in a wide range of functions such as in leaf development, flower symmetry, shoot branching, and senescence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCP super family cl47831
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 50-121 7.24e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


The actual alignment was detected with superfamily member pfam03634:

Pssm-ID: 460998  Cd Length: 152  Bit Score: 134.78  E-value: 7.24e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19547991    50 TSTKDRHTKVEG----RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNI 121
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSI 76
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 50-121 7.24e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 134.78  E-value: 7.24e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19547991    50 TSTKDRHTKVEG----RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNI 121
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSI 76
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 48-120 8.00e-03

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 37.54  E-value: 8.00e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19547991   48 KRTSTKDRHTKV---EG-RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAViaaTGTGTIPANFTSLN 120
Cdd:PLN03105  46 RASGGKDRHSKVltsKGlRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI---TDLPLLNTNFDHLD 119
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 50-121 7.24e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 134.78  E-value: 7.24e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19547991    50 TSTKDRHTKVEG----RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNI 121
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSI 76
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 48-120 8.00e-03

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 37.54  E-value: 8.00e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19547991   48 KRTSTKDRHTKV---EG-RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAViaaTGTGTIPANFTSLN 120
Cdd:PLN03105  46 RASGGKDRHSKVltsKGlRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI---TDLPLLNTNFDHLD 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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