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Conserved domains on  [gi|19110875|gb|AAL85327|]
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global ischemia induced gene GIIG15B [Rattus norvegicus]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10052840)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Gene Ontology:  GO:0003677|GO:0006357|GO:0043565
PubMed:  1357790|26464018|21557080

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 10-62 6.57e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


:

Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 54.17  E-value: 6.57e-12
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 19110875 10 TEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
Cdd:cd00086  8 TPEQLEELEKEFEK-NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 10-62 6.57e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 54.17  E-value: 6.57e-12
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 19110875 10 TEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
Cdd:cd00086  8 TPEQLEELEKEFEK-NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
9-60 9.66e-09

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 46.34  E-value: 9.66e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 19110875    9 PTEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60
Cdd:pfam00046  7 FTPEQLEELEKEFQE-NPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 10-59 2.96e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 44.93  E-value: 2.96e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 19110875    10 TEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 59
Cdd:smart00389  9 TPEQLEELEKEFQK-NPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 10-62 6.57e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 54.17  E-value: 6.57e-12
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|...
gi 19110875 10 TEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
Cdd:cd00086  8 TPEQLEELEKEFEK-NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
9-60 9.66e-09

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 46.34  E-value: 9.66e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 19110875    9 PTEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60
Cdd:pfam00046  7 FTPEQLEELEKEFQE-NPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 10-59 2.96e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 44.93  E-value: 2.96e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 19110875    10 TEDQVEILEYNFNKvNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 59
Cdd:smart00389  9 TPEQLEELEKEFQK-NPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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