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Conserved domains on  [gi|19310665|gb|AAL85063|]
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unknown protein [Arabidopsis thaliana]

Protein Classification

PRKRIP1 family protein( domain architecture ID 707472)

PRKR-interacting protein 1 (PRKRIP1) family protein similar to Arabidopsis thaliana PRKR-interacting protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1168 super family cl25555
Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic ...
 79-128 6.99e-05

Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic proteins of unknown function.


The actual alignment was detected with superfamily member pfam06658:

Pssm-ID: 461977  Cd Length: 136  Bit Score: 41.11  E-value: 6.99e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 19310665    79 SGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIRREEKQKAAEEKTS 128
Cdd:pfam06658  35 SGEFHVYRHLRRREYERLRLIEEQSKKEEEDEEFQQKLEENKRKAEEKTA 84
 
Name Accession Description Interval E-value
DUF1168 pfam06658
Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic ...
 79-128 6.99e-05

Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 461977  Cd Length: 136  Bit Score: 41.11  E-value: 6.99e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 19310665    79 SGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIRREEKQKAAEEKTS 128
Cdd:pfam06658  35 SGEFHVYRHLRRREYERLRLIEEQSKKEEEDEEFQQKLEENKRKAEEKTA 84
 
Name Accession Description Interval E-value
DUF1168 pfam06658
Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic ...
 79-128 6.99e-05

Protein of unknown function (DUF1168); This family consists of several hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 461977  Cd Length: 136  Bit Score: 41.11  E-value: 6.99e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 19310665    79 SGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIRREEKQKAAEEKTS 128
Cdd:pfam06658  35 SGEFHVYRHLRRREYERLRLIEEQSKKEEEDEEFQQKLEENKRKAEEKTA 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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