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Conserved domains on  [gi|17980097|gb|AAL50503|]
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NPIP-like protein, partial [Hylobates klossii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NPIP super family cl05750
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ...
 1-44 8.15e-06

Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.


The actual alignment was detected with superfamily member pfam06409:

Pssm-ID: 461900 [Multi-domain]  Cd Length: 267  Bit Score: 39.72  E-value: 8.15e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 17980097     1 VIHSLPDDFHPGTDFCGIPWIVIIIVFLGISTLAIFLWKTSLCV 44
Cdd:pfam06409   1 MFCCLADERHRGGCFGGHPALLIITLADHRHKFADFGCSPWLCI 44
 
Name Accession Description Interval E-value
NPIP pfam06409
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ...
 1-44 8.15e-06

Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.


Pssm-ID: 461900 [Multi-domain]  Cd Length: 267  Bit Score: 39.72  E-value: 8.15e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 17980097     1 VIHSLPDDFHPGTDFCGIPWIVIIIVFLGISTLAIFLWKTSLCV 44
Cdd:pfam06409   1 MFCCLADERHRGGCFGGHPALLIITLADHRHKFADFGCSPWLCI 44
 
Name Accession Description Interval E-value
NPIP pfam06409
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ...
 1-44 8.15e-06

Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.


Pssm-ID: 461900 [Multi-domain]  Cd Length: 267  Bit Score: 39.72  E-value: 8.15e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 17980097     1 VIHSLPDDFHPGTDFCGIPWIVIIIVFLGISTLAIFLWKTSLCV 44
Cdd:pfam06409   1 MFCCLADERHRGGCFGGHPALLIITLADHRHKFADFGCSPWLCI 44
NPIP pfam06409
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ...
 1-44 1.28e-04

Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.


Pssm-ID: 461900 [Multi-domain]  Cd Length: 267  Bit Score: 36.64  E-value: 1.28e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 17980097     1 VIHSLPDDFHPGTDFCGIPWIVIIIVFLGISTLAIFLWKTSLCV 44
Cdd:pfam06409  22 LIITLADHRHKFADFGCSPWLCIIFLFLIFPKFAGHDCSSDLCQ 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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