NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17979157|gb|AAL49774|]
View 

putative glutamine-rich protein [Arabidopsis thaliana]

Protein Classification

GLTSCR1 domain-containing protein( domain architecture ID 10633660)

GLTSCR1 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GLTSCR1 pfam15249
Conserved region of unknown function on GLTSCR protein; This domain family is found in ...
 138-253 1.34e-32

Conserved region of unknown function on GLTSCR protein; This domain family is found in eukaryotes, and is typically between 105 and 124 amino acids in length. It is found on glioma tumour suppressor candidate region gene proteins. ** Forced reload


:

Pssm-ID: 464589 [Multi-domain]  Cd Length: 102  Bit Score: 117.76  E-value: 1.34e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17979157   138 DAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRILDsdptgqalsrsqqwDNNIAAKVAEFTATFEKQALAFN 217
Cdd:pfam15249   1 DQKAVLNPDYKTPFASLEDAVKRLLPYHVFQEPKPDEEDLEKA--------------DEEFESVATELLKRFQKMLNKYR 66

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 17979157   218 IITRKRAMGEFRSEERLMVEQALLQDERKALIELKA 253
Cdd:pfam15249  67 RLLLRESMRESPSAEMVMLERLFLEEERRELEELKR 102
 
Name Accession Description Interval E-value
GLTSCR1 pfam15249
Conserved region of unknown function on GLTSCR protein; This domain family is found in ...
 138-253 1.34e-32

Conserved region of unknown function on GLTSCR protein; This domain family is found in eukaryotes, and is typically between 105 and 124 amino acids in length. It is found on glioma tumour suppressor candidate region gene proteins. ** Forced reload


Pssm-ID: 464589 [Multi-domain]  Cd Length: 102  Bit Score: 117.76  E-value: 1.34e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17979157   138 DAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRILDsdptgqalsrsqqwDNNIAAKVAEFTATFEKQALAFN 217
Cdd:pfam15249   1 DQKAVLNPDYKTPFASLEDAVKRLLPYHVFQEPKPDEEDLEKA--------------DEEFESVATELLKRFQKMLNKYR 66

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 17979157   218 IITRKRAMGEFRSEERLMVEQALLQDERKALIELKA 253
Cdd:pfam15249  67 RLLLRESMRESPSAEMVMLERLFLEEERRELEELKR 102
 
Name Accession Description Interval E-value
GLTSCR1 pfam15249
Conserved region of unknown function on GLTSCR protein; This domain family is found in ...
 138-253 1.34e-32

Conserved region of unknown function on GLTSCR protein; This domain family is found in eukaryotes, and is typically between 105 and 124 amino acids in length. It is found on glioma tumour suppressor candidate region gene proteins. ** Forced reload


Pssm-ID: 464589 [Multi-domain]  Cd Length: 102  Bit Score: 117.76  E-value: 1.34e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17979157   138 DAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRILDsdptgqalsrsqqwDNNIAAKVAEFTATFEKQALAFN 217
Cdd:pfam15249   1 DQKAVLNPDYKTPFASLEDAVKRLLPYHVFQEPKPDEEDLEKA--------------DEEFESVATELLKRFQKMLNKYR 66

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 17979157   218 IITRKRAMGEFRSEERLMVEQALLQDERKALIELKA 253
Cdd:pfam15249  67 RLLLRESMRESPSAEMVMLERLFLEEERRELEELKR 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH