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Conserved domains on  [gi|16974321|gb|AAL31145|]
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At2g48140/F11L15.4 [Arabidopsis thaliana]

Protein Classification

HPS-like domain-containing protein; protease inhibitor/seed storage/LTP family protein; alpha-amylase inhibitor/seed storage family protein; protease inhibitor/seed storage/LTP family protein; HPS-like domain-containing protein; protease inhibitor/seed storage/LTP family protein; nsLTP_like domain-containing protein; protease inhibitor/seed storage/LTP family protein; HPS-like domain-containing protein; protease inhibitor/seed storage/LTP family protein; protease inhibitor/seed storage/LTP family protein; nsLTP_like domain-containing protein; protease inhibitor/seed storage/LTP family protein( domain architecture ID 13859218)

HPS (Hydrophobic Protein from Soybean) is a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; HPS (Hydrophobic Protein from Soybean) is a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; alpha-amylase inhibitors (AAIs) and seed storage (SS) proteins play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses; AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases.; HPS (Hydrophobic Protein from Soybean) is a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; nsLTP_like domain-containing protein; Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others; nsLTP_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 8-106 5.26e-18

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


:

Pssm-ID: 433909  Cd Length: 100  Bit Score: 75.60  E-value: 5.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321     8 VVMMSSFMLGGQGQQISTPCTSSMISTFTPCLNFITGSSGGSvTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGfIN 87
Cdd:pfam14368   2 ALALAAQAPAPPPAPAAASCTLSMLSGLSPCLPYLTGTPAAT-APSPACCGALKSAVSTDVTCLCALVTAPLPIGFP-IN 79

                          90
                  ....*....|....*....
gi 16974321    88 RTLALALPRACKMGGVPIQ 106
Cdd:pfam14368  80 VTRALALPRACGVKTPPSS 98
PRK13042 super family cl32851
superantigen-like protein SSL4; Reviewed;
89-177 6.35e-05

superantigen-like protein SSL4; Reviewed;


The actual alignment was detected with superfamily member PRK13042:

Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 6.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321   89 TLALALpraCKMGGVPIQCQAAGTPLPAPGQVPFLIAPPPQVSAFSPgASKAAGTTP--TQAPAPDTPADGPTGPTTKsg 166
Cdd:PRK13042  10 SLALGL---LTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAP-QSKPNATTPpsTKVEAPQQTPNATTPSSTK-- 83

                         90
                 ....*....|.
gi 16974321  167 irpVDQPMQPT 177
Cdd:PRK13042  84 ---VETPQSPT 91
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 8-106 5.26e-18

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 75.60  E-value: 5.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321     8 VVMMSSFMLGGQGQQISTPCTSSMISTFTPCLNFITGSSGGSvTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGfIN 87
Cdd:pfam14368   2 ALALAAQAPAPPPAPAAASCTLSMLSGLSPCLPYLTGTPAAT-APSPACCGALKSAVSTDVTCLCALVTAPLPIGFP-IN 79

                          90
                  ....*....|....*....
gi 16974321    88 RTLALALPRACKMGGVPIQ 106
Cdd:pfam14368  80 VTRALALPRACGVKTPPSS 98
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 35-100 1.39e-14

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 65.53  E-value: 1.39e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16974321  35 FTPCLNFITGssgGSVTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGFINRTLALALPRACKM 100
Cdd:cd00010   1 LAPCLSYLTG---GATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
89-177 6.35e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 6.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321   89 TLALALpraCKMGGVPIQCQAAGTPLPAPGQVPFLIAPPPQVSAFSPgASKAAGTTP--TQAPAPDTPADGPTGPTTKsg 166
Cdd:PRK13042  10 SLALGL---LTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAP-QSKPNATTPpsTKVEAPQQTPNATTPSSTK-- 83

                         90
                 ....*....|.
gi 16974321  167 irpVDQPMQPT 177
Cdd:PRK13042  84 ---VETPQSPT 91
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 32-107 8.93e-05

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 39.67  E-value: 8.93e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16974321     32 ISTFTPCLNFITGSSGGsVTPTAGCCDSLKTLTNTGmgCACLILTANV--PLPTGFINRTLALALPRACKMGGVPIQC 107
Cdd:smart00499   5 LLQLAPCLSYLVGGSRG-APPSQQCCSQLRGLNSAQ--CRCLALRAAVlgILEIPGLNAQNAASLPSACGVPPPYTDC 79
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 8-106 5.26e-18

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 75.60  E-value: 5.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321     8 VVMMSSFMLGGQGQQISTPCTSSMISTFTPCLNFITGSSGGSvTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGfIN 87
Cdd:pfam14368   2 ALALAAQAPAPPPAPAAASCTLSMLSGLSPCLPYLTGTPAAT-APSPACCGALKSAVSTDVTCLCALVTAPLPIGFP-IN 79

                          90
                  ....*....|....*....
gi 16974321    88 RTLALALPRACKMGGVPIQ 106
Cdd:pfam14368  80 VTRALALPRACGVKTPPSS 98
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 35-100 1.39e-14

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 65.53  E-value: 1.39e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16974321  35 FTPCLNFITGssgGSVTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGFINRTLALALPRACKM 100
Cdd:cd00010   1 LAPCLSYLTG---GATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
89-177 6.35e-05

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 6.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321   89 TLALALpraCKMGGVPIQCQAAGTPLPAPGQVPFLIAPPPQVSAFSPgASKAAGTTP--TQAPAPDTPADGPTGPTTKsg 166
Cdd:PRK13042  10 SLALGL---LTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAP-QSKPNATTPpsTKVEAPQQTPNATTPSSTK-- 83

                         90
                 ....*....|.
gi 16974321  167 irpVDQPMQPT 177
Cdd:PRK13042  84 ---VETPQSPT 91
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 32-107 8.93e-05

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 39.67  E-value: 8.93e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16974321     32 ISTFTPCLNFITGSSGGsVTPTAGCCDSLKTLTNTGmgCACLILTANV--PLPTGFINRTLALALPRACKMGGVPIQC 107
Cdd:smart00499   5 LLQLAPCLSYLVGGSRG-APPSQQCCSQLRGLNSAQ--CRCLALRAAVlgILEIPGLNAQNAASLPSACGVPPPYTDC 79
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 109-183 6.31e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 6.31e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16974321   109 AAGTPLPAPGQVPFLIAPPPQVSAfSPGASKAAGTTPTQAPAPDTPADGPTGPTTKSGIRPVDQPMQPTGLAQSS 183
Cdd:PRK12270   45 TAAAAAAAAAASAPAAAPAAKAPA-APAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 101-186 4.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 37.27  E-value: 4.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321  101 GGVPIQCQAAGTPLPAPGQvpfliAPPPQVSAFSPGASKAAGTTPTQAPAPDTPADGPTGPTTKSGIRPVDQPMQPTGLA 180
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAA-----AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470


                 ....*.
gi 16974321  181 QSSTSP 186
Cdd:PRK07764 471 AAAPEP 476
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 70-186 7.07e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 36.89  E-value: 7.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16974321   70 CACLILTANVPLPTGFINRtlALALPRACKMGGVPIQCQAAGTPLPAPGQVPfliAPPPQVSAFSPGASKAAGTTPTQAP 149
Cdd:PRK07764 359 CARMLLPSASDDERGLLAR--LERLERRLGVAGGAGAPAAAAPSAAAAAPAA---APAPAAAAPAAAAAPAPAAAPQPAP 433

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16974321  150 APDTPADGPTGPTTKSGIRPVDQPMQPTGLAQSSTSP 186
Cdd:PRK07764 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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