|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-661 |
4.51e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 4.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 310 DLKTKLQQLENKLHdpsednkLNKLERLTKEHDQLAQQLAASEEELikklklyEQLSAQVEEKqsnlrqqmkyEKRLEQA 389
Cdd:TIGR02169 215 ALLKEKREYEGYEL-------LKEKEALERQKEAIERQLASLEEEL-------EKLTEEISEL----------EKRLEEI 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 390 VnrqkfsaQQLKELQMKCDDM-ENYSKAYERQVKEVSelelhqqvmlsrAKQKQLDSVEVFNshvrhlsmdpvicgliks 468
Cdd:TIGR02169 271 E-------QLLEELNKKIKDLgEEEQLRVKEKIGELE------------AEIASLERSIAEK------------------ 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 469 gigqqsdltlplNPNQEDISERVQCLEL-LGKLLQQHRQqnidrrqmLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRL 547
Cdd:TIGR02169 314 ------------ERELEDAEERLAKLEAeIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 548 TKMEASYRTKRDMQAQHRQ---QLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEqDLKARQDRLEK 624
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREkleKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE-EKEDKALEIKK 452
|
330 340 350
....*....|....*....|....*....|....*..
gi 16769462 625 CEQKLAKAEDQLLAVESKVNATQAKLNEVEQKVYSAK 661
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-656 |
5.78e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 5.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 311 LKTKLQQLENKLH--DPSEDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQ 388
Cdd:TIGR02169 672 EPAELQRLRERLEglKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 389 AVNRQKfsaQQLKELQMKCDDMENYSKAYERQVKEVSELELHQQVmlsRAKQKQLDSVEvfnshvrhlsmdpvicgliks 468
Cdd:TIGR02169 752 EIENVK---SELKELEARIEELEEDLHKLEEALNDLEARLSHSRI---PEIQAELSKLE--------------------- 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 469 giGQQSDLTLPLNPNQEDISERVQCLELLGKLLQQHRQQNID---RRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQ 545
Cdd:TIGR02169 805 --EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDlkeQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 546 RLTKMEasyRTKRDMQAQHRQqlLEDQYDQ-TARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQ-----DLKARQ 619
Cdd:TIGR02169 883 RLGDLK---KERDELEAQLRE--LERKIEElEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelSLEDVQ 957
|
330 340 350
....*....|....*....|....*....|....*..
gi 16769462 620 DRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVEQK 656
Cdd:TIGR02169 958 AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-661 |
7.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 310 DLKTKLQQLENKLHDPSEDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQqmkYEKRLEQA 389
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE---LQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 390 VNRQKFSAQQLKELQMKCDDMENYSKAYERQvkevselelhqqvmLSRAKQKQLDSVEVFNShvrhlsmdpvicgliksg 469
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQ--------------LEELESKLDELAEELAE------------------ 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 470 igqqsdltlpLNPNQEDISERVQCLELLGKLLQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTk 549
Cdd:TIGR02168 342 ----------LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 550 measyrtkrdMQAQHRQQLLEDQYDQTARLDELEKREKQalEKLEASKQRNEDLLTAAEQFQEQdLKARQDRLEKCEQKL 629
Cdd:TIGR02168 411 ----------RLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEA-LEELREELEEAEQAL 477
|
330 340 350
....*....|....*....|....*....|..
gi 16769462 630 AKAEDQLLAVESKVNATQAKLNEVEQKVYSAK 661
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
274-654 |
4.34e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 4.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLQAETRDQVISKKcdlpDRKALDQLIGDLKTKLQQLENKLHDPSEDNKLNKLERLTKEHDQLAQQLAASEE 353
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEE----ELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 354 ELIKKLKLYEQLSAQVEEKQSNLRQQMKY-----EKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAYERQVKEVSELE 428
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQlslatEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 429 LHQQvmLSRAKQKQLDSVEVFNSHVRHLSMDPVICGLIKSGIG-QQSDLTLPLNPNQEDISERVQCLELLGKLLQQHRQQ 507
Cdd:COG4717 237 EAAA--LEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 508 NIDRRQmLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQT------ARLDE 581
Cdd:COG4717 315 ELEEEE-LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEdeeelrAALEQ 393
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16769462 582 LEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVE 654
Cdd:COG4717 394 AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
485-655 |
5.92e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 5.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 485 EDISERVQCLELLGKLLQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEAsyrtKRDMQAQH 564
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ----DIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 565 RQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVN 644
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170
....*....|.
gi 16769462 645 ATQAKLNEVEQ 655
Cdd:COG1196 391 ALRAAAELAAQ 401
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
332-643 |
9.31e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 9.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 332 NKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQmkyEKRLEQAVNRQKFSAQQLKELQMKCDDME 411
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL---LAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 412 NYSKAYERQVKEVSELELHQQVMLSRAKQKQLDSVEVFNSHVRHLSMDpviCGLIKSGIGQQSDLtlplnpNQEDISERV 491
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA---EAELAEAEEELEEL------AEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 492 QCLELLGKL--LQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKmeasyrtkrdmQAQHRQQLL 569
Cdd:COG1196 394 AAAELAAQLeeLEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-----------LEEEEEALL 462
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16769462 570 EDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKV 643
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
484-656 |
1.40e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 484 QEDISERVQCLELLGKLLQQHRQQ---NIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDM 560
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 561 QAQHRQQLLEDQydqtARLDELEKREKQALEKLEASKQRNEDLLTAAEQfQEQDLKARQDRLEKCEQKLAKAEDQLLAVE 640
Cdd:COG1196 360 LAEAEEALLEAE----AELAEAEEELEELAEELLEALRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELE 434
|
170
....*....|....*.
gi 16769462 641 SKVNATQAKLNEVEQK 656
Cdd:COG1196 435 EEEEEEEEALEEAAEE 450
|
|
| Ndc80_HEC |
pfam03801 |
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been ... |
48-204 |
1.96e-07 |
|
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been shown that Ndc80/HEC from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle.
Pssm-ID: 461058 Cd Length: 159 Bit Score: 51.14 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 48 RRPSASRlPQPLNLERDRASQMGVTPKrghrfvPSTAERAIAPHSDKKWVAERAQQILEYLhgiQNSEAPTGLIADLFSR 127
Cdd:pfam03801 2 RRSSVYG-GRGGGPRSSHQSFFSSSPM------PASVPRDPRPLRDKSFQQQCIQELLEYL---TENNFEHPLSPKLLKS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 128 PgglrhmTIKQFVSILNFMFHHIWRN-RVTVgqNHVEDITSAMQKLQYPY--QVNKSWLVSPTTQHSFGHVIVLLDFLMD 204
Cdd:pfam03801 72 P------TQKDFNSIFKFLYHRLDPSyEFQK--KIEEEVPMILKQLRYPFldSISKSQLSAVGGPHTWPTFLGLLHWLVE 143
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
367-607 |
2.21e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 367 AQVEEKQSNLRQQMKY-EKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAYERQVKEVsELELHQQVMLSRAKQKQLDS 445
Cdd:COG4942 23 AEAEAELEQLQQEIAElEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-EAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 446 V-EVFNSHVRHLSMdpvicgliksgIGQQSDLTLPLNPnqEDISERVQCLELLGKLLQQHRQQnidrRQMLDKQVAKVKS 524
Cdd:COG4942 102 QkEELAELLRALYR-----------LGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQ----AEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 525 DSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQyDQTARLDELEKREKQALEKLEASKQRNEDLL 604
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA-AELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 16769462 605 TAA 607
Cdd:COG4942 244 PAA 246
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
332-675 |
4.70e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 332 NKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLS----------------AQVEEKQSNLRQQmkyEKRLEQAVNRQKF 395
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSrfigshlavafeadpeAELRQLNRRRVEL---ERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 396 SAQQLKELQMKCDDMEnyskAYERQVKEVSELELHQQVMLSRAKQKQLDSVEVF-NSHVRHLS-MDPVICGLiksgigqQ 473
Cdd:PRK04863 863 QRSQLEQAKEGLSALN----RLLPRLNLLADETLADRVEEIREQLDEAEEAKRFvQQHGNALAqLEPIVSVL-------Q 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 474 SDltlplnPNQEDiservqclellgkLLQQHRQQNIDRRQMLDKQVAKVK-----------SDSIELDTEIATMDSQLRa 542
Cdd:PRK04863 932 SD------PEQFE-------------QLKQDYQQAQQTQRDAKQQAFALTevvqrrahfsyEDAAEMLAKNSDLNEKLR- 991
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 543 qkQRLTKMEASYRTKRDMQAQHRQQLleDQYDQtaRLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRL 622
Cdd:PRK04863 992 --QRLEQAEQERTRAREQLRQAQAQL--AQYNQ--VLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDEL 1065
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16769462 623 EK----CEQKLAKAEDQLLAVESKVNATQAKLNEVEQK-------VYSAKlPSFQPVLDAIKNH 675
Cdd:PRK04863 1066 HArlsaNRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDyhemreqVVNAK-AGWCAVLRLVKDN 1128
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
274-656 |
7.82e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 7.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLqaETRDQVISKKcdLPDRKALDQLIGDLKTKLQQLENKLHDPSEDNKL-NKLERLTKEHDQLAQQLAASE 352
Cdd:PRK03918 310 REIEKRLSRL--EEEINGIEER--IKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLT 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 353 -EELIKKLKLYEQLSAQVEEKQSNLRQQMkyeKRLEQAVNRQKFSAQQLKELQMKC---------DDMENYSKAYERQVK 422
Cdd:PRK03918 386 pEKLEKELEELEKAKEEIEEEISKITARI---GELKKEIKELKKAIEELKKAKGKCpvcgrelteEHRKELLEEYTAELK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 423 EVSElELHQQVMLSRAKQKQLDSVEVFNSHVRHLSmdpvicgliksgigqqsdltlplnpNQEDISERVQCLEllgKLLQ 502
Cdd:PRK03918 463 RIEK-ELKEIEEKERKLRKELRELEKVLKKESELI-------------------------KLKELAEQLKELE---EKLK 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 503 QHRQQNIDRRQmldKQVAKVKSDSIELDTEIATMDSQLR---AQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQtarL 579
Cdd:PRK03918 514 KYNLEELEKKA---EEYEKLKEKLIKLKGEIKSLKKELEkleELKKKLAELEKKLDELEEELAELLKELEELGFES---V 587
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16769462 580 DELEKRekqaLEKLEASKQRNEDLLTAaeqfqEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVEQK 656
Cdd:PRK03918 588 EELEER----LKELEPFYNEYLELKDA-----EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
485-656 |
9.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 9.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 485 EDISERVQCLELLGKLLQQHRQQNIDR------RQMLDKQVAKVKSDsiELDTEIATMDSQLRAQKQRLTKMEASYRTKR 558
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLaeleylRAALRLWFAQRRLE--LLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 559 DMQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTA--------AEQFQEQDLKARQ------DRLEK 624
Cdd:COG4913 323 EELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAlglplpasAEEFAALRAEAAAllealeEELEA 402
|
170 180 190
....*....|....*....|....*....|..
gi 16769462 625 CEQKLAKAEDQLLAVESKVNATQAKLNEVEQK 656
Cdd:COG4913 403 LEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
247-641 |
1.43e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.83 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 247 QAHAIQLDEDVNGLLFEEASKCIALWDQELTNEEAKLQAetrDQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLHdpS 326
Cdd:PRK01156 193 KSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM---DDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS--M 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 327 EDNKLNKLERLTKEHDQLAQQLA-ASEEELIKKLKLYEQLsAQVEEKQSNLRQQM-KYEKRLEQAVNRQKFSAQ------ 398
Cdd:PRK01156 268 ELEKNNYYKELEERHMKIINDPVyKNRNYINDYFKYKNDI-ENKKQILSNIDAEInKYHAIIKKLSVLQKDYNDyikkks 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 399 -------QLKELQMKCDDMENYSKAYERQVKEVSELELHQQVM---LSRAKQKQLDSVEVFNSHVRHLSMDpviCGLIKS 468
Cdd:PRK01156 347 ryddlnnQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMsafISEILKIQEIDPDAIKKELNEINVK---LQDISS 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 469 GIGQQSDLTLPLNPNQEDISERVQCLE------LLGKLLQQHRQQNIdrRQMLDKQVAKVKSDSIELDTEIATMDSQLRA 542
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNgqsvcpVCGTTLGEEKSNHI--INHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 543 QKQRLT--------KMEASYRTKRDMQAQhrqqlLEDQYDQTARLDELEKREKQALE-----KLEASKQRNEDLLTAAEQ 609
Cdd:PRK01156 502 LKKRKEyleseeinKSINEYNKIESARAD-----LEDIKIKINELKDKHDKYEEIKNrykslKLEDLDSKRTSWLNALAV 576
|
410 420 430
....*....|....*....|....*....|..
gi 16769462 610 FQEQDLKARQDRLEKCEQKLAKAEDQLLAVES 641
Cdd:PRK01156 577 ISLIDIETNRSRSNEIKKQLNDLESRLQEIEI 608
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
280-661 |
2.75e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 280 EAKLQAETRDQVISKKCDLPDR-KALDQLIGDLKTKLQQLENKLHDPSEdnKLNKLERLTKEHDQLAQQLAASEEELIKK 358
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELiKEKEKELEEVLREINEISSELPELRE--ELEKLEKEVKELEELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 359 LKLYEQLSAQVEEKQSNLRQQMKYEKRLEQAVNRqkfsaqqLKELQMKCDDMENYSKAYERQVKEVSELELHQQVMLSRA 438
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-------LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 439 K--QKQLDSVEVFNSHVRHLSMDpvicgliKSGIGQQSDLTLPLNPNQEDISERVQCLELLGKLLQQHRQQNIDRR-QML 515
Cdd:PRK03918 324 NgiEERIKELEEKEERLEELKKK-------LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 516 DKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRT----KRDMQAQHRQQLLEdQYdqTARLDELEKREKQALE 591
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELLE-EY--TAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 592 KLEASKQRNED-------------LLTAAEQFQE----------QDLKARQDRLEKCEQKLAKAEDQLLAVES---KVNA 645
Cdd:PRK03918 474 KERKLRKELRElekvlkkeselikLKELAEQLKEleeklkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKeleKLEE 553
|
410
....*....|....*.
gi 16769462 646 TQAKLNEVEQKVYSAK 661
Cdd:PRK03918 554 LKKKLAELEKKLDELE 569
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
484-655 |
3.76e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 484 QEDISERVQCLELLGKLLQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQ 563
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 564 HRQQLLEDQydqtARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKcEQKLAKAEDQLLAVESKV 643
Cdd:COG1196 335 LEEELEELE----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA-LRAAAELAAQLEELEEAE 409
|
170
....*....|..
gi 16769462 644 NATQAKLNEVEQ 655
Cdd:COG1196 410 EALLERLERLEE 421
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
506-648 |
4.68e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 506 QQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQ---LRAQKQRLTKMEASYRTKRDMQAQHRQ-QLLEDQYDQ----TA 577
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAEldaLQERREALQRLAEYSWDEIDVASAEREiAELEAELERldasSD 685
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16769462 578 RLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQdlkarqdrLEKCEQKLAKAEDQLLAVESKVNATQA 648
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--------LEQAEEELDELQDRLEAAEDLARLELR 748
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
274-673 |
2.79e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLQAETRDQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLHD-PSEDNKLNKLERLTKEHDQLAQQLAASE 352
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElKELKEKAEEYIKLSEFYEEYLDELREIE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 353 EELIK---KLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAYERQVKEVSELEL 429
Cdd:PRK03918 314 KRLSRleeEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 430 HQqvmLSRAKQKQLDSVEVFNSHVRHLsmdpvicgliKSGIGQqsdltlpLNPNQEDISERVQCLELLGKLLQQHrqqni 509
Cdd:PRK03918 394 EE---LEKAKEEIEEEISKITARIGEL----------KKEIKE-------LKKAIEELKKAKGKCPVCGRELTEE----- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 510 DRRQMLDKQVAKVKsdsiELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAqhrqqlLEDQYDQtarLDELEKR-EKQ 588
Cdd:PRK03918 449 HRKELLEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKESELIK------LKELAEQ---LKELEEKlKKY 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 589 ALEKLEASKQRNEDLLtaaEQFQEqdLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVEQKVYSAKLPSFQPV 668
Cdd:PRK03918 516 NLEELEKKAEEYEKLK---EKLIK--LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
|
....*
gi 16769462 669 LDAIK 673
Cdd:PRK03918 591 EERLK 595
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-672 |
3.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 332 NKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQAVNRqkfSAQQLKELQMKCDDME 411
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ---LEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 412 NYSKAYERQVKEVSELELHQQVMLSRAKQKQLDSVEVFNShvrhlsmdpvicgLIKSGIGQQSDLTLpLNPNQEDISERV 491
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-------------LREALDELRAELTL-LNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 492 QCLELLGKLLQQhrqqnidRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEAsyrtKRDMQAQHRQQLLED 571
Cdd:TIGR02168 827 ESLERRIAATER-------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN----ERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 572 QYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEqfqeqdlKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLN 651
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLE-------GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
330 340
....*....|....*....|....
gi 16769462 652 EVEQKVYS--AKLPSFQPV-LDAI 672
Cdd:TIGR02168 969 EARRRLKRleNKIKELGPVnLAAI 992
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
279-423 |
7.21e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 7.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 279 EEAKLQAETrdqvISKKCDLPDRKALDQLIGDL-------KTKLQQLENKLHDPSE--DNKLNKLERltkehdqlaqqla 349
Cdd:PRK12704 45 EEAKKEAEA----IKKEALLEAKEEIHKLRNEFekelrerRNELQKLEKRLLQKEEnlDRKLELLEK------------- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 350 aSEEELIKKLKLYEQLSAQVEEKQSNLRQ-QMKYEKRLEQAVNrqkFSAQQLKELQMkcDDMENYSKA--------YERQ 420
Cdd:PRK12704 108 -REEELEKKEKELEQKQQELEKKEEELEElIEEQLQELERISG---LTAEEAKEILL--EKVEEEARHeaavlikeIEEE 181
|
...
gi 16769462 421 VKE 423
Cdd:PRK12704 182 AKE 184
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
252-672 |
1.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 252 QLDEDVNGLLFEEASKCIALWDQELTNEEAKLQAETRdqviskkcdlpDRKALDQLIGDLKTKLQQLENKLhdpsEDNKL 331
Cdd:COG4913 273 ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEA-----------ELERLEARLDALREELDELEAQI----RGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 332 NKLERLTKEHDQLAQQLaaseEELIKKLKLYEQLSAQVEEKQSNLRQQmkYEKRLEQAVNRQKFSAQQLKELQMKCDDME 411
Cdd:COG4913 338 DRLEQLEREIERLEREL----EERERRRARLEALLAALGLPLPASAEE--FAALRAEAAALLEALEEELEALEEALAEAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 412 NYSKAYERQVKEVSE-----------LELHQQVMLSR-AKQKQLDSVEVfnshvrhlsmdPVICGLIKSGIGQQS----- 474
Cdd:COG4913 412 AALRDLRRELRELEAeiaslerrksnIPARLLALRDAlAEALGLDEAEL-----------PFVGELIEVRPEEERwrgai 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 475 -------DLTLPLNP----------NQEDISERVQCLE-----------------LLGKL-------------------- 500
Cdd:COG4913 481 ervlggfALTLLVPPehyaaalrwvNRLHLRGRLVYERvrtglpdperprldpdsLAGKLdfkphpfrawleaelgrrfd 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 501 ---------LQQHRQ---------QNIDRRQMLDKQvaKVKSDSI----------ELDTEIATMDSQLRAQKQRLTKMEA 552
Cdd:COG4913 561 yvcvdspeeLRRHPRaitragqvkGNGTRHEKDDRR--RIRSRYVlgfdnraklaALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 553 SYRT--KRDMQAQHRQQLLEDQYDQTARLDELEKREKQaLEKLEASkqrNEDLLTAAEQFQ--EQDLKARQDRLEKCEQK 628
Cdd:COG4913 639 ELDAlqERREALQRLAEYSWDEIDVASAEREIAELEAE-LERLDAS---SDDLAALEEQLEelEAELEELEEELDELKGE 714
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 16769462 629 LAKAEDQLLAVESKVNATQAKLNEVEQKVYSAKLPSFQPVLDAI 672
Cdd:COG4913 715 IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
299-442 |
2.28e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 299 PDRKALDQLIGDLKTKLQQLENKLhdpseDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQ 378
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAEL-----DALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 379 QMKYEKR--------------------LEQAVNRQKFSAQQ---LKELQMKCDDMENYSKAYERQVKEVSELELHQQVML 435
Cdd:COG3883 91 RARALYRsggsvsyldvllgsesfsdfLDRLSALSKIADADadlLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
....*..
gi 16769462 436 SRAKQKQ 442
Cdd:COG3883 171 AELEAQQ 177
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
538-657 |
2.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 538 SQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQ-TARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLK 616
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 16769462 617 ARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVEQKV 657
Cdd:COG4913 335 NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
274-657 |
2.72e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLQAETRDQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLHdpSEDNKLNKLERLTKEHDQLAQQLAASEE 353
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELD--ILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 354 ELIKKLKLYEQLSAQVEEKQsnlrQQMKYEKRLEQAvnrqkfSAQQLKELQMKCDDMENYSKAYERQVKEvselelHQQV 433
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTA----QCEKLEKIHLQE------SAQSLKEREQQLQTKEQIHLQETRKKAV------VLAR 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 434 MLSRAKQKQLdsvevFNSHVRHLSMDpvicgliksgiGQQSDLTLPLNPNQEDISERVQCLELLGKLLQQHRQQNIDRRQ 513
Cdd:TIGR00618 496 LLELQEEPCP-----LCGSCIHPNPA-----------RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 514 MLDKQVAKVKSDSIELdteiATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQY-----------DQTARLDEL 582
Cdd:TIGR00618 560 SLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHallrklqpeqdLQDVRLHLQ 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 583 EKREKQALEK-------LEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLakaeDQLLAVESKVNATQAKLNEVEQ 655
Cdd:TIGR00618 636 QCSQELALKLtalhalqLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEK----EQLTYWKEMLAQCQTLLRELET 711
|
..
gi 16769462 656 KV 657
Cdd:TIGR00618 712 HI 713
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
501-671 |
2.75e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 501 LQQHRQQNIDRRQMLDKQVAKV----------------KSDSIELDTE-------IATMDSQLRAQKQRLTKMEASYRTK 557
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELrkeleeaeaaleefrqKNGLVDLSEEaklllqqLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 558 RDMQAQHR------------QQLLEDQYDQTARLDELEKR----------EKQALEKLEAS-KQRNEDLLTAAE------ 608
Cdd:COG3206 246 RAQLGSGPdalpellqspviQQLRAQLAELEAELAELSARytpnhpdviaLRAQIAALRAQlQQEAQRILASLEaeleal 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16769462 609 QFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEVEQKVYSAKLPSFQPVLDA 671
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
483-649 |
2.76e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 483 NQEDISERVQCLELLGKLLQQHRQQnIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQ---------KQRLTKMEAS 553
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelealEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 554 YRTKRDmQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQrnEDLLTAAEQFQE--QDLKARQDRLEKCEQKLAK 631
Cdd:COG4717 148 LEELEE-RLEELRELEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEELEElqQRLAELEEELEEAQEELEE 224
|
170
....*....|....*...
gi 16769462 632 AEDQLLAVESKVNATQAK 649
Cdd:COG4717 225 LEEELEQLENELEAAALE 242
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
495-636 |
2.86e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 43.50 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 495 ELLGKL----LQQHRQQNIDRRQMLDKQVAKVKSdSIELDTEIATMDSQLRAQKQRLTKMEASYrtkrdmqaQHRQQLLE 570
Cdd:COG1566 71 QVLARLdptdLQAALAQAEAQLAAAEAQLARLEA-ELGAEAEIAAAEAQLAAAQAQLDLAQREL--------ERYQALYK 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16769462 571 DQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEqfQEQDLKARQDRLEKCEQKLAKAEDQL 636
Cdd:COG1566 142 KGAVSQQELDEARAALDAAQAQLEAAQAQLAQAQAGLR--EEEELAAAQAQVAQAEAALAQAELNL 205
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
262-657 |
3.88e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 262 FEEASKCIALWDQELTNEEAKLQA-----ETRDQVISKKcdlpdRKALDQL---IGDLKTKLQQLENKLHDpSEDNKLNK 333
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEElesrlEELEEQLETL-----RSKVAQLelqIASLNNEIERLEARLER-LEDRRERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 334 LERLTKEHDQLA-QQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQmkyEKRLEQAVNRQKFSAQQLKELQMKCDDMEN 412
Cdd:TIGR02168 420 QQEIEELLKKLEeAELKELQAELEELEEELEELQEELERLEEALEEL---REELEEAEQALDAAERELAQLQARLDSLER 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 413 YSKAYERQVKEVSELELHQQVmLSRAKQKQLDSVEVFN-----------SHVRHLSMDPV------ICGLIKSGIGQQSD 475
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSG-LSGILGVLSELISVDEgyeaaieaalgGRLQAVVVENLnaakkaIAFLKQNELGRVTF 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 476 LTLPLNPNQED-----------------ISERVQCLELLGKLLQ---------------QHRQQNIDRRQML-------- 515
Cdd:TIGR02168 576 LPLDSIKGTEIqgndreilkniegflgvAKDLVKFDPKLRKALSyllggvlvvddldnaLELAKKLRPGYRIvtldgdlv 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 516 ----------DKQVAKVKSDSIELDT---EIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQTARLDEL 582
Cdd:TIGR02168 656 rpggvitggsAKTNSSILERRREIEEleeKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 583 EKREKQALEKLEASKQRNEDLLTAAEQFQEQD---------LKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKLNEV 653
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEerleeaeeeLAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
....
gi 16769462 654 EQKV 657
Cdd:TIGR02168 816 NEEA 819
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
274-624 |
3.96e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLQAETR--DQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLHDPSEdnKLNKLERLTKEHDQLAQQLAAS 351
Cdd:COG4717 105 EELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRE--LEEELEELEAELAELQEELEEL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 352 EEELikKLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAYERQ----------- 420
Cdd:COG4717 183 LEQL--SLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaalla 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 421 -----------VKEVSELELHQQVMLSRAKQKQLDSVEVFNSHVRHLSMDPVICGLIKSGIGQQ-SDLTLPLNPNQEDIS 488
Cdd:COG4717 261 llglggsllslILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELlAALGLPPDLSPEELL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 489 ERVQCLELLGKLLQQHRQQN-----IDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRD---- 559
Cdd:COG4717 341 ELLDRIEELQELLREAEELEeelqlEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGelee 420
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 560 -MQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAE----QFQEQDLKARQDRLEK 624
Cdd:COG4717 421 lLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGElaelLQELEELKAELRELAE 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
484-657 |
5.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 484 QEDISERVQCLELLGKLLQQHRQQNIDRRQMLDK---QVAKVKSDSIELDTEIATMDSQLRAQKQRLTKM-EASYRTKRD 559
Cdd:COG4942 40 EKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEKEIAELRAELEAQKEELAELlRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 560 ------------MQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQ 627
Cdd:COG4942 120 pplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQK 199
|
170 180 190
....*....|....*....|....*....|
gi 16769462 628 KLAKAEDQLLAVESKVNATQAKLNEVEQKV 657
Cdd:COG4942 200 LLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
499-656 |
5.86e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 499 KLLQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEaSYRTKRDMQAQHRQQLLEDQYDQTAR 578
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE-QLKKKEAEEKKKAEELKKAEEENKIK 1662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 579 LDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQ-DRLEKCEQKLAKAEDQLLAVE--SKVNATQAKLNEVEQ 655
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEeeNKIKAEEAKKEAEED 1742
|
.
gi 16769462 656 K 656
Cdd:PTZ00121 1743 K 1743
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
501-638 |
8.08e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 501 LQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEA---SYRTKRDMQA-QH-------RQQLL 569
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgNVRNNKEYEAlQKeieslkrRISDL 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 570 EDQY-DQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLA 638
Cdd:COG1579 109 EDEIlELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-442 |
1.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 274 QELTNEEAKLQAETRDQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLhdpsedNKLNK-LERLTKEHDQLAQQLAASE 352
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL------AALEAeLAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 353 EELIKKLKLYEQLS--------------AQVEEKQSNLRQQMKY-EKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAY 417
Cdd:COG4942 104 EELAELLRALYRLGrqpplalllspedfLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180
....*....|....*....|....*
gi 16769462 418 ERQVKEVSELELHQQVMLSRAKQKQ 442
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKEL 208
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
506-656 |
1.33e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 506 QQNIDR----RQMLDKQVAKVKSDS------IELDTEIATMDSQLRA-------QKQRLTKMEASYRTKRDMQAQHRQQL 568
Cdd:COG1196 185 EENLERlediLGELERQLEPLERQAekaeryRELKEELKELEAELLLlklreleAELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 569 LEDQYDQT-ARLDELEKREKQA----------LEKLEASKQRNEDLLTAAEQFQEQ---DLKARQDRLEKCEQKLAKAED 634
Cdd:COG1196 265 LEAELEELrLELEELELELEEAqaeeyellaeLARLEQDIARLEERRRELEERLEEleeELAELEEELEELEEELEELEE 344
|
170 180
....*....|....*....|..
gi 16769462 635 QLLAVESKVNATQAKLNEVEQK 656
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEA 366
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
557-656 |
1.40e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 557 KRDMQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDlltaaeqfQEQDLKARQDRLEKCEQKLAKAEDQL 636
Cdd:PRK12704 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ--------KEENLDRKLELLEKREEELEKKEKEL 119
|
90 100
....*....|....*....|
gi 16769462 637 LAVESKVNATQAKLNEVEQK 656
Cdd:PRK12704 120 EQKQQELEKKEEELEELIEE 139
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
488-656 |
1.53e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 488 SERVQCLELLGKLlQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRltkmEASYRTKRDMQAQHRQQ 567
Cdd:PTZ00121 1245 AEEERNNEEIRKF-EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK----KADEAKKKAEEAKKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 568 LLEDQYDQTARLDELEKREKQALEKLEASKQRNE---DLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVN 644
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaaDEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
|
170
....*....|..
gi 16769462 645 ATQAKLNEVEQK 656
Cdd:PTZ00121 1400 AEEDKKKADELK 1411
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
520-661 |
1.72e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 520 AKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQTARLDELEKR----EKQA--LEKL 593
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKaeedKKKAdeLKKA 1413
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 594 EASKQRNEDLLTAAEQFQEQD-LKARQDRLEKCEQKLAKAEDQLLAVESKVNATQA-KLNEVEQKVYSAK 661
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADeAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkKADEAKKKAEEAK 1483
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
304-441 |
2.29e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 304 LDQLIGDLKTKLQQLENKLHDpsEDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKL-YEQLSAQVEEKQSNLRQQMKY 382
Cdd:PRK00409 518 LNELIASLEELERELEQKAEE--AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKeAQQAIKEAKKEADEIIKELRQ 595
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 383 EKRLEQAVNRqkfsAQQLKELQMKCDD-MENYSKAYERQVKEVSELELHQQVMLSRAKQK 441
Cdd:PRK00409 596 LQKGGYASVK----AHELIEARKRLNKaNEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
511-650 |
2.39e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 511 RRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLE--DQYDQTARLDELE--KRE 586
Cdd:COG1579 25 RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEALQKEIEslKRR 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16769462 587 KQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKL 650
Cdd:COG1579 105 ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
501-656 |
3.93e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 501 LQQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTK-MEASYRTKRDMQAQhrQQLLE-----DQYD 574
Cdd:COG3883 42 LQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGErARALYRSGGSVSYL--DVLLGsesfsDFLD 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 575 QTARLDELEKREKQALEKLEASKQRNEDLLTAAEQfQEQDLKARQDRLekcEQKLAKAEDQLLAVESKVNATQAKLNEVE 654
Cdd:COG3883 120 RLSALSKIADADADLLEELKADKAELEAKKAELEA-KLAELEALKAEL---EAAKAELEAQQAEQEALLAQLSAEEAAAE 195
|
..
gi 16769462 655 QK 656
Cdd:COG3883 196 AQ 197
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
281-650 |
4.05e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 281 AKLQAETRDQVISKKCDlPDRKALDQLIGDLKTKLQQLENKLHDPSEDNKLNKLE-------RLTKEHDQLAQ------- 346
Cdd:pfam12128 384 IKEQNNRDIAGIKDKLA-KIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEeeyrlksRLGELKLRLNQatatpel 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 347 --QLAASEEELIKKLKLYEQLSAQVEEKQSNLRQqmkYEKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKA-----YER 419
Cdd:pfam12128 463 llQLENFDERIERAREEQEAANAEVERLQSELRQ---ARKRRDQASEALRQASRRLEERQSALDELELQLFPqagtlLHF 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 420 QVKEVSELELHQQVMLSRAKQKQLDsvevfnshvrhlsMDPVICGLIKSGIGQQSDLTLPLnpnqedisERVQCLELLgk 499
Cdd:pfam12128 540 LRKEAPDWEQSIGKVISPELLHRTD-------------LDPEVWDGSVGGELNLYGVKLDL--------KRIDVPEWA-- 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 500 llqQHRQQNIDRRQMLDKQVAKVKSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQTARL 579
Cdd:pfam12128 597 ---ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAL 673
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16769462 580 DELEKREKQALEKLEASKQRNEDLLTAA-EQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNATQAKL 650
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWlEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGA 745
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
552-657 |
4.16e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 552 ASYRTKRDMQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAE-QFQEQDLKARQDRLEKCEQKLA 630
Cdd:PRK12705 22 VVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREElQREEERLVQKEEQLDARAEKLD 101
|
90 100
....*....|....*....|....*..
gi 16769462 631 KAEDQLLAVESKVNATQAKLNEVEQKV 657
Cdd:PRK12705 102 NLENQLEEREKALSARELELEELEKQL 128
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
531-646 |
4.32e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 531 TEIATMDSQLRAQKQRLTKMEASyrtkrdmqaqhRQQLLEDQ-YDQTARLDELEKREKQALEKLEASKQR--NEDLLTAA 607
Cdd:COG0542 404 MEIDSKPEELDELERRLEQLEIE-----------KEALKKEQdEASFERLAELRDELAELEEELEALKARweAEKELIEE 472
|
90 100 110
....*....|....*....|....*....|....*....
gi 16769462 608 EQFQEQDLKARQDRLEKCEQKLAKAEDQLLAVESKVNAT 646
Cdd:COG0542 473 IQELKEELEQRYGKIPELEKELAELEEELAELAPLLREE 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
263-623 |
5.99e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 263 EEASKCIALWDQELTNEEAKLQAETRDqviskkcdlpdRKALDQLIGDLKTKLQQLENKLHDPSEDNK--LNKLERLTKE 340
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELE-----------LEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 341 HDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQAVNRQKFSAQQLKELQMkcddmeNYSKAYERQ 420
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL------EALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 421 VKEVSELELHQQVMLSRAKQKQLDSVEvfnshvrhlsmdpvicglIKSGIGQQSDLTLPLNPNQEDISERVQCLELLGKL 500
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEE------------------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 501 LQQHRQQNIDRRQMLDKQVAkvksdsiELDTEIATMDSQLRAQKQRLTKMEASYRTKRDMQAQHRQQLLEDQYDQtARLD 580
Cdd:COG1196 461 LLELLAELLEEAALLEAALA-------ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGV 532
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 16769462 581 ELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLE 623
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
|
| PRK10920 |
PRK10920 |
putative uroporphyrinogen III C-methyltransferase; Provisional |
335-406 |
8.17e-03 |
|
putative uroporphyrinogen III C-methyltransferase; Provisional
Pssm-ID: 236795 Cd Length: 390 Bit Score: 38.92 E-value: 8.17e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16769462 335 ERLTKEHDQLAQQLAAseeelikklkLYEQLSAQVEEKQSNLRQQmkyEKRLEQAVNRQKFSAQQLKELQMK 406
Cdd:PRK10920 63 QNQTATNDALANQLTA----------LQKAQESQKQELEGILKQQ---AKALDQANRQQAALAKQLDELQQK 121
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
297-655 |
8.66e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.51 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 297 DLPDRKaldqligDLKTKLQQLeNKLHDPSEDNK------------LNKLERLTKEHDQLAQQLAASEEELikklklyeq 364
Cdd:PRK11281 34 DLPTEA-------DVQAQLDAL-NKQKLLEAEDKlvqqdleqtlalLDKIDRQKEETEQLKQQLAQAPAKL--------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 365 lsAQVEEKQSNLrqqmkyeKRLEQAVNRQKFSAQQLKELQMkcddmenyskayeRQVKEVSELelhQQVmlsrakQKQLD 444
Cdd:PRK11281 97 --RQAQAELEAL-------KDDNDEETRETLSTLSLRQLES-------------RLAQTLDQL---QNA------QNDLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 445 SVevfNSHVrhlsmdpvicgliksgIGQQSdltlplnpnqedISERVQclellgKLL--QQHRQQNIdrRQML----DKQ 518
Cdd:PRK11281 146 EY---NSQL----------------VSLQT------------QPERAQ------AALyaNSQRLQQI--RNLLkggkVGG 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 519 VAKVKSDSIELDTEIATMDSQLRAQKQRL---TKMEASYRTKRDM------QAQHRQQLLEDQYDQTaRLDELEKREKQA 589
Cdd:PRK11281 187 KALRPSQRVLLQAEQALLNAQNDLQRKSLegnTQLQDLLQKQRDYltariqRLEHQLQLLQEAINSK-RLTLSEKTVQEA 265
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16769462 590 LEKLEASKQRNEDLLTaaeqfQEQDLKAR-QDRLEKCEQKLAKAEDQLLAVESKV-NATQAKLNEVEQ 655
Cdd:PRK11281 266 QSQDEAARIQANPLVA-----QELEINLQlSQRLLKATEKLNTLTQQNLRVKNWLdRLTQSERNIKEQ 328
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
333-656 |
9.34e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.55 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 333 KLERLTKEHDQLAQQLAASEEElikklklYEQLSAQVEEKQSNLRQQMK---YEKRLEQAVNRQKFSAQQLKELQMKCDD 409
Cdd:COG3096 307 RLVEMARELEELSARESDLEQD-------YQAASDHLNLVQTALRQQEKierYQEDLEELTERLEEQEEVVEEAAEQLAE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 410 MENYSKAYERQVKEV-SELELHQQ---VMLSRAKQKQldsvevfnSHVRHLSMDPVICGLIKSGIGQQSDLTLPLNPNQE 485
Cdd:COG3096 380 AEARLEAAEEEVDSLkSQLADYQQaldVQQTRAIQYQ--------QAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 486 DISERVQCLELLGKLLQQHRQQNIDRRQMLDKQVAKV-KSDSIELDTEIATMDSQLRAQKQRLTKMEASYRTKRdmqaqh 564
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVeRSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELE------ 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 565 rqQLLEDQYDQTARLDELEKREKQALEkleaskqrNEDLLTAAEQFQEQdlkarqdRLEKCEQKLAKAEDQLLAVESKVN 644
Cdd:COG3096 526 --QRLRQQQNAERLLEEFCQRIGQQLD--------AAEELEELLAELEA-------QLEELEEQAAEAVEQRSELRQQLE 588
|
330
....*....|..
gi 16769462 645 ATQAKLNEVEQK 656
Cdd:COG3096 589 QLRARIKELAAR 600
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
306-661 |
9.96e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 306 QLIGDLKTKLQQLENKLHDPSEDN---------KLNKLERLTKEHD-------QLAQQLAASEEELIKKLKLYEQLSAQV 369
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENsekqreleeKQNEIEKLKKENQsykqeikNLESQINDLESKIQNQEKLNQQKDEQI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 370 EEKQSNLRQQMKYEKRLEQAVNRQKfsaQQLKELqmkcddmENYSKAYERQVKEVSELELHQqvmlsrakQKQLDSVEvf 449
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNN---SEIKDL-------TNQDSVKELIIKNLDNTRESL--------ETQLKVLS-- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 450 nshvrhlsmdpvicGLIKSgigqqsdLTLPLNPNQEDISERVQCLELLGKLLQQHRQQNIDrrqmLDKQVAKVKSDSIEL 529
Cdd:TIGR04523 475 --------------RSINK-------IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD----LTKKISSLKEKIEKL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16769462 530 DTEIATMDSQLRAQKQRLTKMEasyrtkrdmqaqhrqqlledqYDQTARLDELEKREKQalEKLEASKQRNEDLLTAAEQ 609
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDD---------------------FELKKENLEKEIDEKN--KEIEELKQTQKSLKKKQEE 586
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 16769462 610 FQ------EQDLKARQDRLEKCEQKLAKAEDQLlaveSKVNATQAKLNEVEQKVYSAK 661
Cdd:TIGR04523 587 KQelidqkEKEKKDLIKEIEEKEKKISSLEKEL----EKAKKENEKLSSIIKNIKSKK 640
|
|
| |
