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Conserved domains on  [gi|16768334|gb|AAL28386|]
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GM01994p [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RBD-FIP super family cl09694
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
1-43 9.94e-11

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


The actual alignment was detected with superfamily member pfam09457:

Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 50.80  E-value: 9.94e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 16768334    1 MLIANGMENEALlqrqrvkELEDYLDNLLLRVMETHPKILQNP 43
Cdd:pfam09457  6 QDALQKQEEENR-------RLEDYIDNILLRIMEHNPSILEVP 41
 
Name Accession Description Interval E-value
RBD-FIP pfam09457
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
1-43 9.94e-11

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 50.80  E-value: 9.94e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 16768334    1 MLIANGMENEALlqrqrvkELEDYLDNLLLRVMETHPKILQNP 43
Cdd:pfam09457  6 QDALQKQEEENR-------RLEDYIDNILLRIMEHNPSILEVP 41
 
Name Accession Description Interval E-value
RBD-FIP pfam09457
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
1-43 9.94e-11

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 50.80  E-value: 9.94e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 16768334    1 MLIANGMENEALlqrqrvkELEDYLDNLLLRVMETHPKILQNP 43
Cdd:pfam09457  6 QDALQKQEEENR-------RLEDYIDNILLRIMEHNPSILEVP 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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