|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 805.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPL 368
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
22-368 |
1.30e-132 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 384.91 E-value: 1.30e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 22 PAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRG 101
Cdd:COG1290 31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 102 LYYGSylYKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATLTR 177
Cdd:COG1290 111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 178 FLTFH-FLFPFVIAAATLLHLLFLHETGSNNPLG----LNSDTDKISFHPYFSYKDLIGFAAILITLTCLALFSPNllGD 252
Cdd:COG1290 189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQFLFWTLIA 330
Cdd:COG1290 267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346
|
330 340 350
....*....|....*....|....*....|....*...
gi 13183289 331 DVAILTWIGGMPVehPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:COG1290 347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
2.66e-93 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 277.71 E-value: 2.66e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 9 PLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 89 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 13183289 167 GFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
8.80e-86 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.08 E-value: 8.80e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 18 LVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 98 IGRGLYYG--SYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATL 175
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 13183289 176 TRFLTFHFLFPFVIAAATLLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
235-330 |
7.71e-13 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 65.59 E-value: 7.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 235 ILITLTC---LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSK 311
Cdd:TIGR01156 44 ILGTIACvvgLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVN 118
|
90 100
....*....|....*....|..
gi 13183289 312 QRSLTF-RPISQ--FLFWTLIA 330
Cdd:TIGR01156 119 KFQNPFrRPVATtvFLFGTVVA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 805.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPL 368
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
4-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 716.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00119 5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00119 85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQF 323
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 324 LFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00119 325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPL 369
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 706.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00074 2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00074 82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPL 369
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 699.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
4-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 685.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQF 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 324 LFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
11-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 652.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 11 LKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFF 90
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 91 FICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSV 170
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 171 DHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLALFSPNLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQFLFWTLIA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 13183289 331 DVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
4-368 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 634.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00034 4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00034 84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQF 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 324 LFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPL 368
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-365 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 628.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00145 2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00145 82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLL 365
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-365 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 591.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 1 MASLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00016 2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNML 160
Cdd:MTH00016 82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 161 VQWIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLT 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 241 CLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPI 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 321 SQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLL 365
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
4-368 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 530.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00022 3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00022 83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQF 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 13183289 324 LFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPL 367
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
4-364 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 519.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00224 5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00224 85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQF 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 13183289 324 LFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLL 364
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
3-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 517.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 3 SLRKTHPLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNL 82
Cdd:MTH00053 4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQ 162
Cdd:MTH00053 84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 163 WIWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQ 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 13183289 323 FLFWTLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPL 369
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
4-368 |
4.58e-144 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 413.95 E-value: 4.58e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 4 LRKTHpLLKIANDaLVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLH 83
Cdd:MTH00033 3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQW 163
Cdd:MTH00033 81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 164 IWGGFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLA 243
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 244 LFS--PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPIS 321
Cdd:MTH00033 241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 13183289 322 QFLFWTLIADVAILTWIGGMPV-EHPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:MTH00033 321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPL 368
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
22-368 |
1.30e-132 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 384.91 E-value: 1.30e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 22 PAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRG 101
Cdd:COG1290 31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 102 LYYGSylYKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATLTR 177
Cdd:COG1290 111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 178 FLTFH-FLFPFVIAAATLLHLLFLHETGSNNPLG----LNSDTDKISFHPYFSYKDLIGFAAILITLTCLALFSPNllGD 252
Cdd:COG1290 189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQFLFWTLIA 330
Cdd:COG1290 267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346
|
330 340 350
....*....|....*....|....*....|....*...
gi 13183289 331 DVAILTWIGGMPVehPYIIIGQIASVLYFSIFLLLMPL 368
Cdd:COG1290 347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
15-366 |
4.92e-129 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 374.28 E-value: 4.92e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 15 NDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICI 94
Cdd:MTH00086 4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 95 YLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHAT 174
Cdd:MTH00086 84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 175 LTRFLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILItLTCLALFSPNLLGDPD 254
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQrslTFRPISQFLFWTLIADVAI 334
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319
|
330 340 350
....*....|....*....|....*....|..
gi 13183289 335 LTWIGGMPVEHPYIIIGQIASVLYFSIFLLLM 366
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
2.66e-93 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 277.71 E-value: 2.66e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 9 PLLKIANDALVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 89 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 13183289 167 GFSVDHATLTRFLTFHFLFPFVIAAATLLHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
18-357 |
1.10e-92 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 281.87 E-value: 1.10e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 18 LVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97
Cdd:MTH00046 9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 98 IGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATLTR 177
Cdd:MTH00046 89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 178 FLTFHFLFPFVIAAATLLHLLFLHETGSNNPLGL-NSDTDKISFHPYFSYKDLIGFAAILITLTCLALFSPNLLGDPDNF 256
Cdd:MTH00046 169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLASILVLMLVPilhtSKQRSLTFRPISQFLFWTLIADVAILT 336
Cdd:MTH00046 249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323
|
330 340
....*....|....*....|.
gi 13183289 337 WIGGMPVEHPYIIIGQIASVL 357
Cdd:MTH00046 324 YLGGCHPEYPYLLISQLFSVL 344
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
8.80e-86 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.08 E-value: 8.80e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 18 LVDLPAPANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 98 IGRGLYYG--SYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATL 175
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 13183289 176 TRFLTFHFLFPFVIAAATLLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
207-354 |
1.94e-56 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 181.30 E-value: 1.94e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 207 NPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 13183289 287 KLGGVLALLASILVLMLVPILHTSKQRSlTFRPISQFLFWTLIADVAILTWIGGMPVEHPYIIIGQIA 354
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
88-253 |
4.26e-50 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 165.88 E-value: 4.26e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 88 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIW 165
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 166 GGFSVDHATLTRFLTFHF-LFPFVIAAATLLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLIGFAAILITLTCLAL 244
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 13183289 245 FSPNLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
258-358 |
5.61e-49 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 160.72 E-value: 5.61e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPISQFLFWTLIADVAILTW 337
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 13183289 338 IGGMPVEHPYIIIGQIASVLY 358
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
33-209 |
2.54e-38 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 137.15 E-value: 2.54e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 33 FGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 111
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 112 -TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATLTRFLTFH-FLFPFVI 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 13183289 190 AAATLLHLLFLHETGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-209 |
6.91e-33 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 122.52 E-value: 6.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 24 PANISAWWNFGSLLGLCLIAQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 104 YGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNMLVQWIWGGFSVDHATLTRFLTF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*....
gi 13183289 182 H-FLFPFVIAAATLLHLLFLHETGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
235-344 |
1.19e-13 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 68.10 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 235 ILITLTC---LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSK 311
Cdd:CHL00058 44 ILGTIACnvgLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVN 118
|
90 100 110
....*....|....*....|....*....|....*..
gi 13183289 312 QRSLTF-RPISQ--FLFWTLiadVAILTWIGG-MPVE 344
Cdd:CHL00058 119 KFQNPFrRPVATtvFLIGTA---VALWLGIGAtLPID 152
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
242-329 |
4.08e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 66.74 E-value: 4.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 242 LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFR--- 318
Cdd:COG5679 55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRrpv 129
|
90
....*....|.
gi 13183289 319 PISQFLFWTLI 329
Cdd:COG5679 130 ATAVFLFGTLV 140
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
235-330 |
7.71e-13 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 65.59 E-value: 7.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13183289 235 ILITLTC---LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSK 311
Cdd:TIGR01156 44 ILGTIACvvgLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVN 118
|
90 100
....*....|....*....|..
gi 13183289 312 QRSLTF-RPISQ--FLFWTLIA 330
Cdd:TIGR01156 119 KFQNPFrRPVATtvFLFGTVVA 140
|
|
| |
