|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-1223 |
1.03e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 639 QRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEME-LKARLTQA 717
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 718 QASFEREREGLQSsawteekvrgLTQELEQFHQEQLTSLVEKHTLEKE-ELRKELLEKHQRELQEGREKMETECNRRTSQ 796
Cdd:COG1196 315 EERLEELEEELAE----------LEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 797 IEAQFQSdcQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQwEFEKDELTQECAEAQELLKETLKREKTTSLVLTQE 876
Cdd:COG1196 385 AEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 877 REMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLE 956
Cdd:COG1196 462 LELLAELLEE-AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 957 MEHDQERqeMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQNGCQVIGEEEVEGDGALSLL 1036
Cdd:COG1196 541 EAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1037 qqGEQLLEENGDVllslqRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSScldepateffgntaeqtepflQQNRTK 1116
Cdd:COG1196 619 --GDTLLGRTLVA-----ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG---------------------GSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1117 QVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEAKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCAD 1196
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580
....*....|....*....|....*..
gi 12655864 1197 cdrASEKKQDLLFDVSVLKKKLKMLER 1223
Cdd:COG1196 751 ---EALEELPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
412-1083 |
7.13e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 7.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 412 ERRNEyNLRKLD--EEYKERIAALKNELRKEREQILQQAGKQR--LELEQEIEKAKTEENYIRDRLALSLKENSRLENEL 487
Cdd:COG1196 172 ERKEE-AERKLEatEENLERLEDILGELERQLEPLERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 488 LENAENVLAekfgdldpssAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAqgrvlrlplknspseEVEANS 567
Cdd:COG1196 251 LEAELEELE----------AELAELEAELEELRLELEE----LELELEEAQAEEYELLA---------------ELARLE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 568 GGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDIcclrLELEDKVRHYEKQLDETVVScKKAQENMKQRHENETHT 647
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAE-LAEAEEALLEAEAELAE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 648 LEKQISDLKNEIAELQGQAAVLKEAHHEATcRHEEEKKQLQVKLEEEKTHLQEKLRlQHEMELKARLTQAQASFEREREG 727
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALA-ELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 728 LQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLE-KEELRKELLEKHQRELQEGREKMETECNRRTSQIEAqfqsDCQ 806
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAaRLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA----VLI 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 807 KVTERCESALQSLEGRYRQElkDLQEQQREEKSQWEFEKDELTqecAEAQELLKETLKREKTTSLVLTQEREMLEKTYKE 886
Cdd:COG1196 531 GVEAAYEAALEAALAAALQN--IVVEDDEVAAAAIEYLKAAKA---GRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 887 HLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEmehdqERQEM 966
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL-----EAEAE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 967 MSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQAtsplsmlqngcqvigEEEVEGDGALSLLQQGEQLLEEN 1046
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE---------------EEALEEQLEAEREELLEELLEEE 745
|
650 660 670
....*....|....*....|....*....|....*..
gi 12655864 1047 GDVLLSLQRAHEQAVKENvKMATEISRLQQRLQKLEP 1083
Cdd:COG1196 746 ELLEEEALEELPEPPDLE-ELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-1005 |
1.36e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 373 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRKEREQiLQQ 447
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAE-LAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 448 AGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKfgdldpssaeffLQEERLTQMRNEYERQC 527
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE------------ERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 528 RVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAnsggiepehglgSEECNPLNMSIEAELVIEQMKEQHhrdicc 607
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------------EAELAEAEEELEELAEELLEALRA------ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 608 lRLELEDKVRHYEKQLDetvvsckkAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQL 687
Cdd:COG1196 395 -AAELAAQLEELEEAEE--------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 688 QVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLqSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEEL 767
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF-LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 768 RKELLEKHQRELQEGREKMETECNRRTSQIEAqFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDE 847
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 848 LTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSsh 927
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA-- 701
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12655864 928 KRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEM 1005
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
407-808 |
1.23e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 407 HHAAIERRNEYnlrkldEEYKERIAALKNELRkEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE 486
Cdd:TIGR02168 669 NSSILERRREI------EELEEKIEELEEKIA-ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 487 llenaENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN 566
Cdd:TIGR02168 742 -----VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 567 SGGIEPEHGLGSEECNPLNMSIEAElVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvsckKAQENMKQRHENETH 646
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESEL-----EALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 647 TLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRLQHEMELkarltQAQASFERERE 726
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTL-----EEAEALENKIE 964
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 727 GLQSSAwtEEKVRGLTQELEQFHQEQLTSLVEkhtLEKEELRKELLEKHQRELQEGREKME---TECNRRTS-------- 795
Cdd:TIGR02168 965 DDEEEA--RRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEAKETLEeaiEEIDREARerfkdtfd 1039
|
410
....*....|...
gi 12655864 796 QIEAQFQSDCQKV 808
Cdd:TIGR02168 1040 QVNENFQRVFPKL 1052
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
679-1620 |
1.40e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 679 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQAS-------FEREREGLQSSAWTEEKVRgLTQELEQFhQE 751
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEkaerykeLKAELRELELALLVLRLEE-LREELEEL-QE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 752 QLTSLVEKHTLEKEELRK--ELLEKHQRELQEGREKME--TECNRRTSQIEAQFQSDCQKVTERCESALQSLE--GRYRQ 825
Cdd:TIGR02168 247 ELKEAEEELEELTAELQEleEKLEELRLEVSELEEEIEelQKELYALANEISRLEQQKQILRERLANLERQLEelEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 826 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKrekttslvLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDL 905
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEA--------ELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 906 RNvsetQQSMLSDQILELKSSHKRELREREEVLcqagasEQLASQRLERLEMEHDqERQEMMSKLLAMENIHKATCETAD 985
Cdd:TIGR02168 399 NN----EIERLEARLERLEDRRERLQQEIEELL------KKLEEAELKELQAELE-ELEEELEELQEELERLEEALEELR 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 986 RERAEMSTEisrLQSKIKEMQQATSPLSMLQNgcqVIGEEEVEGDGALSLLQQGEQLLEENGDV--LLSLQRAHEQAVkE 1063
Cdd:TIGR02168 468 EELEEAEQA---LDAAERELAQLQARLDSLER---LQENLEGFSEGVKALLKNQSGLSGILGVLseLISVDEGYEAAI-E 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1064 NVkmateisrLQQRLQKLepglVMSScldepateffGNTAEQTEPFLQQNRTKQVegvtrrhvlSDLEDDEVRDLGSTGT 1143
Cdd:TIGR02168 541 AA--------LGGRLQAV----VVEN----------LNAAKKAIAFLKQNELGRV---------TFLPLDSIKGTEIQGN 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1144 SsvqrqeakiEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMlCADCDRASEkkqdllfdvsvLKKKLKMLER 1223
Cdd:TIGR02168 590 D---------REILKNIEGFLGVAKDLVKFDP--KLRKALSYLLGGVLV-VDDLDNALE-----------LAKKLRPGYR 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1224 I-----PEASPKYKLLYEDVSRENdclqeelrmmetrydEALENNKELtaevfrlqDEL-KKMEEVTETFLSLEKSYDEV 1297
Cdd:TIGR02168 647 IvtldgDLVRPGGVITGGSAKTNS---------------SILERRREI--------EELeEKIEELEEKIAELEKALAEL 703
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1298 KIENEEL-NVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEpdgnILQLNQTLEEcvprvrsvhhVIEECKQENQY 1376
Cdd:TIGR02168 704 RKELEELeEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER----IAQLSKELTE----------LEAEIEELEER 769
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1377 LEGNTQLLEKVKAhEIAWLHGTIQTHQERprvqnqvILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVT 1456
Cdd:TIGR02168 770 LEEAEEELAEAEA-EIEELEAQIEQLKEE-------LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1457 ILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLYWNSGR 1536
Cdd:TIGR02168 842 DLEEQIEELS--EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1537 MRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQN-QEKLQELNQRLTEMlcqkekepGN---SA 1612
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKIKEL--------GPvnlAA 991
|
....*...
gi 12655864 1613 LEEREQEK 1620
Cdd:TIGR02168 992 IEEYEELK 999
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
684-1318 |
2.41e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 2.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 684 KKQLQvKLEEEKTHLQEKLRLQHEMELKarltQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEKHT 761
Cdd:COG1196 199 ERQLE-PLERQAEKAERYRELKEELKEL----EAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 762 LEKEELRKELLEKHQRELQEGREKmetecnrrtsqieaqfqsdcqkvtERCESALQSLEGRyRQELKDLQEQQREEKSQW 841
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAEL------------------------ARLEQDIARLEER-RRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 842 EFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtykehLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQIL 921
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE-----AEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 922 ELKSSHKRELREREEVLcQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSK 1001
Cdd:COG1196 404 ELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1002 IKEMQQATSPLSMLQngcQVIGEEEVEGDGALSLLQQGEQ-LLEENGDVLLSLQRAHEQAVKE--NVKMATEISRLQQRL 1078
Cdd:COG1196 483 LEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLrGLAGAVAVLIGVEAAYEAALEAalAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1079 QKLEPGLVMSsclDEPATEFFGNTAEQTEPFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEAKIEESEA 1158
Cdd:COG1196 560 AAAIEYLKAA---KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1159 SVEgfSELENSEETRTESWELKNQISQLQEQlmmlcadcdRASEKKQDLLFDVSVLKKKLKMLERipeaspKYKLLYEDV 1238
Cdd:COG1196 637 RRA--VTLAGRLREVTLEGEGGSAGGSLTGG---------SRRELLAALLEAEAELEELAERLAE------EELELEEAL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1239 SRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEELNVLVLRLQGKIEKL 1318
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1005 |
9.73e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 9.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 358 HQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALKN 435
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAelEELESRLEELEEQLETLRS 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 436 ELRKEREQILQQAGK-QRLE-----LEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPSSAEF 509
Cdd:TIGR02168 387 KVAQLELQIASLNNEiERLEarlerLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 510 FLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNS--PSEEVEANSGGIEPEHGLGSEECNPLNMS 587
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGR 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 588 IEAELV---------IEQMKEqhHRDICCLRLELeDKVRHYEKQLDETVVsckKAQENMKQRHENETHTLEKQISDLKNE 658
Cdd:TIGR02168 547 LQAVVVenlnaakkaIAFLKQ--NELGRVTFLPL-DSIKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 659 I-------AELQGQAAVLKEAHHEATC---------------------------------RHEEEKKQLQVKLEEEKTHL 698
Cdd:TIGR02168 621 LlggvlvvDDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaktnssilerrreieELEEKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 699 QEKLRLQHEME-----LKARLTQAQASFEREREGLQSSawtEEKVRGLTQELEQFHQEqLTSLVEKHTLEKEELRKELLE 773
Cdd:TIGR02168 701 AELRKELEELEeeleqLRKELEELSRQISALRKDLARL---EAEVEQLEERIAQLSKE-LTELEAEIEELEERLEEAEEE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 774 KHQRElqEGREKMETECNRRTSQIEAQfqsdcqkvtercESALQSLEGRYrQELKDLQEQQREEKSQWEFEKDELTQECA 853
Cdd:TIGR02168 777 LAEAE--AEIEELEAQIEQLKEELKAL------------REALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 854 EAQELLKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQDLEDLRnvseTQQSMLSDQILELkSSHKRELRE 933
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESE-LEALLNERASLEEALALLR----SELEELSEELREL-ESKRSELRR 915
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 12655864 934 REEVLCQAGASEQLasqRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEM 1005
Cdd:TIGR02168 916 ELEELREKLAQLEL---RLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-906 |
5.52e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 5.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 344 LALEYELLVTKNSTHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 421
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 422 LDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGD 501
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 502 LDPSSAEFFLQEERLTQMRN--EYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSE 579
Cdd:COG1196 375 AEAEEELEELAEELLEALRAaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 580 EcnplnmsiEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDEtvvscKKAQENMKQRHE--NETHTLEKQISDLKN 657
Cdd:COG1196 455 E--------EEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEgfLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 658 EIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQhemeLKARLTQAQASFEREREGLQSSAWTEEK 737
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 738 VRG-------LTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQIEAQFQSDCQKVTE 810
Cdd:COG1196 598 GAAvdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG-SAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 811 RCESALQSLEGRYRQELKDLQEQQREEksqwefEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNS 890
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEE------EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570
....*....|....*.
gi 12655864 891 MVVERQQLLQDLEDLR 906
Cdd:COG1196 751 EALEELPEPPDLEELE 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-1223 |
2.29e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 373 LERVDQVVRE----KEKLRSDLDKAEKLKSLMAsEVDDHHAAIerrneYNLRKldEEYKERIAALKNELRKEREQI---- 444
Cdd:TIGR02168 188 LDRLEDILNElerqLKSLERQAEKAERYKELKA-ELRELELAL-----LVLRL--EELREELEELQEELKEAEEELeelt 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 445 --LQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLEnaenvLAEKFGDLDPSSAEFFLQEERLTQMRNE 522
Cdd:TIGR02168 260 aeLQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI-----LRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 523 YERQCRVLQDQVDELQSELEEYRAQgrvlrlpLKNSPSEEVEANSGGIEPEHGLGSEEcnplnmsiEAELVIEQMKEQHH 602
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAE-------LEELEAELEELESRLEELEEQLETLR--------SKVAQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 603 RDICCLRLELEDKVRHYEKQLDETvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEE 682
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEI-------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 683 EKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFERERE---GLQSSAWTEEKVR-GLTQELEQFHQEQLTSLVE 758
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsGILGVLSELISVDeGYEAAIEAALGGRLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 759 KhTLEKEELRKELLEKHQR--------ELQEGREKMETECNRRTSQ-IEAQFQSDCQKVTERCESALQSLEGRYRqelkd 829
Cdd:TIGR02168 553 E-NLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGNDREILKNIeGFLGVAKDLVKFDPKLRKALSYLLGGVL----- 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 830 lqeqqreeksqwefekdeLTQECAEAQELLKETLKREkttsLVLTQEREMLEKTY-----KEHLNSMVVERQQLLQDLED 904
Cdd:TIGR02168 627 ------------------VVDDLDNALELAKKLRPGY----RIVTLDGDLVRPGGvitggSAKTNSSILERRREIEELEE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 905 LRNVSETQQSMLSDQILELKSshkrELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCEtA 984
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRK----ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-L 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 985 DRERAEMSTEISRLQSKIKE----MQQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEQLLEEngdVLLSLQRAHEQA 1060
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---RLESLERRIAAT 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1061 VKENVKMATEISRLQQRLQKLEPGLvmsscldEPATEFFGNTAEQTEPFLQQNRTKQVEGVTRRHVLSDLEDDevrdlgs 1140
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEI-------EELEELIEELESELEALLNERASLEEALALLRSELEELSEE------- 902
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1141 tgtssVQRQEAKIEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMLCAD-CDRASEKKQDLLFDVSVLKKKLK 1219
Cdd:TIGR02168 903 -----LRELESKRSELRRELEELREKLAQLELRLE--GLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLK 975
|
....
gi 12655864 1220 MLER 1223
Cdd:TIGR02168 976 RLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
984-1795 |
4.31e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 4.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 984 ADRERAEMSTEISRLQSKIKEMQQATSPLSMLQngcqvigEEEVEGDgalSLLQQGEQLLEENGDVLLSLQRAHEQAVKE 1063
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAE-------EELEELT---AELQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1064 NVKMATEISRLQQRLQKLEPGLvmsscldepatEFFGNTAEQTEPFLQQNRTKQVEGVTRrhvLSDLEDDEVRDLGstgt 1143
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERL-----------ANLERQLEELEAQLEELESKLDELAEE---LAELEEKLEELKE---- 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1144 sSVQRQEAKIEESEASVEGFSEL-----ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKL 1218
Cdd:TIGR02168 352 -ELESLEAELEELEAELEELESRleeleEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1219 KM--LERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDE 1296
Cdd:TIGR02168 431 EEaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1297 VKIENEELNVLVLRLQGKIEKLQEsvvqrcdcclWEASLENLEIEPDGNILqlnqtleecvprvrsvhhvieeCKQENQY 1376
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEG----------YEAAIEAALGGRLQAVV----------------------VENLNAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1377 LEGnTQLLEKVKAHEIAWLHGTIQTHQErPRVQNQVILEENTTLLGFQDKHFQhqatiAELELEK--------------- 1441
Cdd:TIGR02168 559 KKA-IAFLKQNELGRVTFLPLDSIKGTE-IQGNDREILKNIEGFLGVAKDLVK-----FDPKLRKalsyllggvlvvddl 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1442 TKLQELTRKLKERVTILVKQKDVLSHG---------------EKEEELKammhDLQITCSEMQQKVELLRYESEKLQQEN 1506
Cdd:TIGR02168 632 DNALELAKKLRPGYRIVTLDGDLVRPGgvitggsaktnssilERRREIE----ELEEKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1507 SILRNEITTLNEEDSISNLKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQN 1586
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1587 QEKLQELNQRLTEmlcqkekepGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDEL 1666
Cdd:TIGR02168 788 EAQIEQLKEELKA---------LREALDELRAELTLLNEEAA----NLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1667 EKMKQLHRcpDLSDFQQKISSVLsynEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWEHQSASLKSQLVA 1746
Cdd:TIGR02168 855 ESLAAEIE--ELEELIEELESEL---EALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELEELREKLAQ 926
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 12655864 1747 SQEKVQNLEDTVQNVNlqmSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1795
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1148-1800 |
1.51e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1148 RQEAKIEESEASVEGFSELENSeeTRTESWELKNQISQLQEQL-----MMLCadcdraseKKQDLLFDVSVLKKKLKMLE 1222
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASS--ARSQANSIQSQLEIIQEQArnqnsMYMR--------QLSDLESTVSQLRSELREAK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1223 RipeaspkyklLYEDVSREndcLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMeevtetFLSLEKSYDEVKIENE 1302
Cdd:pfam15921 338 R----------MYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL------LADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1303 ELNVLVLRLQGK---IEKLQESVVQR-CDCCLWEASLENLEIEPDGNilqlnqtLEECVPRVRSVHHVIEECKQENQYLE 1378
Cdd:pfam15921 399 QNKRLWDRDTGNsitIDHLRRELDDRnMEVQRLEALLKAMKSECQGQ-------MERQMAAIQGKNESLEKVSSLTAQLE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1379 GNTQLLEKVkAHEIAWLHGTIQTHQerprvqnQVILEENTTLlgfQDKHFQHQATIAELElektklqeltrKLKERVTIL 1458
Cdd:pfam15921 472 STKEMLRKV-VEELTAKKMTLESSE-------RTVSDLTASL---QEKERAIEATNAEIT-----------KLRSRVDLK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1459 VKQkdvLSHGEKEEElkaMMHDLQITCsemqqkvELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLYWNSGRMR 1538
Cdd:pfam15921 530 LQE---LQHLKNEGD---HLRNVQTEC-------EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1539 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEML--CQKEKEPGNSALEER 1616
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLneVKTSRNELNSLSEDY 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1617 EQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQ----ENHLLKDELEKMKQL-HRCPDLSDFQQKISSVLSY 1691
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsDGHAMKVAMGMQKQItAKRGQIDALQSKIQFLEEA 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1692 NEKLLKEKEALSEELNScvdklaksslLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSD 1771
Cdd:pfam15921 757 MTNANKEKHFLKEEKNK----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
650 660
....*....|....*....|....*....
gi 12655864 1772 LRVTQQEKEALKQEVMSLHKQLQNAGGKS 1800
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQGPGYTS 855
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
364-1083 |
4.14e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 364 SFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALKNELR--- 438
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKelYALANEISRLEQQKQILRERLAnle 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 439 ---KEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELlENAENVLAEKFGDLDPSSAEFFLQEER 515
Cdd:TIGR02168 316 rqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-EELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 516 LTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEhglgseecnpLNMSIEAELVIE 595
Cdd:TIGR02168 395 IASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE----------LEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 596 QMKEQHHRDICCLRLELeDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQ---------ISDL----------- 655
Cdd:TIGR02168 461 EALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvLSELisvdegyeaai 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 656 -------------KNEIAELQGQAAVLKEAHHEAT-----------------CRHEEEKKQLQVKLEEEKTH-------- 697
Cdd:TIGR02168 540 eaalggrlqavvvENLNAAKKAIAFLKQNELGRVTflpldsikgteiqgndrEILKNIEGFLGVAKDLVKFDpklrkals 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 698 -----------LQEKLRLQHEMELKARLTQAQASFEReREGLQS--SAWTEEKVRGLTQELeqfhqEQLTSLVEKHTLEK 764
Cdd:TIGR02168 620 yllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVR-PGGVITggSAKTNSSILERRREI-----EELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 765 EELRKEL--LEKHQRELQEGREKMETECNRRTSQIEAQfqsdcQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWE 842
Cdd:TIGR02168 694 AELEKALaeLRKELEELEEELEQLRKELEELSRQISAL-----RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 843 fEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQDLEDLRNvsetQQSMLSDQILE 922
Cdd:TIGR02168 769 -RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERLESLER----RIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 923 LKSSHKRELREREEV---LCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENihkatcetADRERAEMSTEISRLQ 999
Cdd:TIGR02168 843 LEEQIEELSEDIESLaaeIEELEELIEELESELEALLNERASLEEALALLRSELEE--------LSEELRELESKRSELR 914
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1000 SKIKEMQQATSPLSMLQNGCQVigeeevegdgalSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQ 1079
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEV------------RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
....
gi 12655864 1080 KLEP 1083
Cdd:TIGR02168 983 ELGP 986
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
347-938 |
5.36e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 347 EYELLVTKNSTHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRnEYNLRKLDEEY 426
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI-EAKINELEEEK 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 427 KERIAALKnelrkEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENEL------------------- 487
Cdd:TIGR02169 444 EDKALEIK-----KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAraseervrggraveevlka 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 488 ----------------------LENA-----ENVLAEKfgDLDPSSAEFFLQEER--------LTQMRN----------- 521
Cdd:TIGR02169 519 siqgvhgtvaqlgsvgeryataIEVAagnrlNNVVVED--DAVAKEAIELLKRRKagratflpLNKMRDerrdlsilsed 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 522 ----------EYERQCR-----VLQDQVdeLQSELEEYRAQGRVLRL-PLKNSPSEEVEANSGGIEPEHGLGSeecNPLN 585
Cdd:TIGR02169 597 gvigfavdlvEFDPKYEpafkyVFGDTL--VVEDIEAARRLMGKYRMvTLEGELFEKSGAMTGGSRAPRGGIL---FSRS 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 586 MSIEAELVIEQMKEQHHrdiccLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRhENETHTLEKQISDLKNEIAELQGQ 665
Cdd:TIGR02169 672 EPAELQRLRERLEGLKR-----ELSSLQSELRRIENRLDELSQELSDASRKIGEI-EKEIEQLEQEEEKLKERLEELEED 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 666 AAVLKEAhheatcrhEEEKKQLQVKLEEEKTHLQEKLRlqhemELKARLTQAQASFEREREglqssawteEKVRGLTQEL 745
Cdd:TIGR02169 746 LSSLEQE--------IENVKSELKELEARIEELEEDLH-----KLEEALNDLEARLSHSRI---------PEIQAELSKL 803
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 746 EQFHQEQLTSLVE-KHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEA--QFQSDCQKVTERCESALQSLEGR 822
Cdd:TIGR02169 804 EEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENlnGKKEELEEELEELEAALRDLESR 883
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 823 yrqeLKDLQEQQREEKSQWEFEKDELtQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYK------------EHLNS 890
Cdd:TIGR02169 884 ----LGDLKKERDELEAQLRELERKI-EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedeeipeeelslEDVQA 958
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 12655864 891 MVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSSHKRELREREEVL 938
Cdd:TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1429-1800 |
6.37e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.11 E-value: 6.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1429 QHQATIAELELEKTKLQELTRKLKE---RVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLryesEKLQQE 1505
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKII----SQLNEQ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1506 NSILRNEITTLNEEDSISNLKLGtlywnsgRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQ 1585
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELE-------EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1586 NQEKLQELNQRLTEMLCQKEKEPGN-SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKD 1664
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1665 ELEKMKQLHRCPD--LSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAK------SSLLE-------HRIATMKQE 1729
Cdd:TIGR04523 497 ELKKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkKENLEkeideknKEIEELKQT 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1730 QKS--------------WEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1795
Cdd:TIGR04523 577 QKSlkkkqeekqelidqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
....*
gi 12655864 1796 AGGKS 1800
Cdd:TIGR04523 657 IRNKW 661
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-954 |
1.09e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 374 ERVDQVVREKEKLRSDLDKAEKLKSlmasEVDDHHAAIERRNEYNLRKLDEEYKEriaalKNELRKEREQILQQAG--KQ 451
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKA----EAAEKKKEEAKKKADAAKKKAEEKKK-----ADEAKKKAEEDKKKADelKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 452 RLELEQEIEKAKTEENYIRDRLALSLK-ENSRLENELLENAENvlAEKFGDLDPSSAEFFLQEErlTQMRNEYERQCRVL 530
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADEAKKKAEE--AKKAEEAKKKAEEAKKADE--AKKKAEEAKKADEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 531 QDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVI---EQMKEQHHRDICC 607
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaeELKKAEEKKKAEE 1568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 608 LRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLE--KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKK 685
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeaKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 686 QLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLtqeleqfhqEQLTSLVEKHTLEKE 765
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA---------EELKKKEAEEKKKAE 1719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 766 ELRKellEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEK 845
Cdd:PTZ00121 1720 ELKK---AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 846 DELTQECAEAQELLKETlkrEKTTSLVLTQEREMLEKTYKEHL---NSMVVERQQLLQDLEDLRNVSETQQSMLSDQile 922
Cdd:PTZ00121 1797 DKKIKDIFDNFANIIEG---GKEGNLVINDSKEMEDSAIKEVAdskNMQLEEADAFEKHKFNKNNENGEDGNKEADF--- 1870
|
570 580 590
....*....|....*....|....*....|..
gi 12655864 923 lkSSHKRELREREEVLCQAGASEQLASQRLER 954
Cdd:PTZ00121 1871 --NKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
589-1343 |
1.11e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 589 EAELVIEQMKEQHHRdiccLRLELEDKVRhYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 668
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 669 LKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLrlqHEMELK-ARLTQAQASFEREREGLQS-SAWTEEKVRGLTQELE 746
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI---GELEAEiASLERSIAEKERELEDAEErLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 747 QFHQEQLTSLVEKHTLEKE-ELRKELLEKHQRELQEgrekmETECNRRTSQIEAQFQSDCQKVTERCESaLQSLEGRYRQ 825
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEyAELKEELEDLRAELEE-----VDKEFAETRDELKDYREKLEKLKREINE-LKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 826 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKRE---KTTSLVLTQEREMLEKTYKEH--LNSMVVERQQLLQ 900
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwklEQLAADLSKYEQELYDLKEEYdrVEKELSKLQRELA 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 901 DLEDLRNVSETQQSMLSDQILELKSSHK------RELREREEVlcQAGASEQLASQRLERLEMEHDQERQEMMsKLLAME 974
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQgvhgtvAQLGSVGER--YATAIEVAAGNRLNNVVVEDDAVAKEAI-ELLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 975 NIHKATCetadreraemsteisrlqSKIKEMQQATSPLSmlqngcqvIGEEEVEGDGALSLLQQGEQLleEN------GD 1048
Cdd:TIGR02169 571 KAGRATF------------------LPLNKMRDERRDLS--------ILSEDGVIGFAVDLVEFDPKY--EPafkyvfGD 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1049 VLL--SLQRAHEQAVK-ENVKMATEIsrlqqrlqkLEPGLVMSSCLDEPATEfFGNTAEQTEPFLQQNRTKQVEGVTRRH 1125
Cdd:TIGR02169 623 TLVveDIEAARRLMGKyRMVTLEGEL---------FEKSGAMTGGSRAPRGG-ILFSRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1126 VLSDLedDEVRDLGSTGTSSVQRQEAKIEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMLCADCDRASEKKQ 1205
Cdd:TIGR02169 693 LQSEL--RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE--ELEEDLSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1206 DLLFDVSVLKKKLKMLERIPEASPkykllYEDVSRENDCLQEELRMMETRYDEAlenNKELTAEVFRLQDELKKMEEVTE 1285
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSR-----IPEIQAELSKLEEEVSRIEARLREI---EQKLNRLTLEKEYLEKEIQELQE 840
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 12655864 1286 TFLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESVVQrcdcclWEASLENLEIEPD 1343
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD------LESRLGDLKKERD 892
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
343-908 |
2.43e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 343 TLALEYELLVTKNSTHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKL 422
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE-ELEEA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 423 DEEYKERIAALKNELRKEREQILQQAGKQR---------LELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEN 493
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEeleelaeelLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 494 VLAEKFgdldpSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPL-KNSPSEEVEansggiep 572
Cdd:COG1196 430 LAELEE-----EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaEAAARLLLL-------- 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 573 ehglgseecnpLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCkkAQENMKQRHENETHTLEKQI 652
Cdd:COG1196 497 -----------LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA--LAAALQNIVVEDDEVAAAAI 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 653 SDLKneiAELQGQAAVLKEAHHEAtcRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA 732
Cdd:COG1196 564 EYLK---AAKAGRATFLPLDKIRA--RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 733 WTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERC 812
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 813 ESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKRekttslvLTQEREMLE----------K 882
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER-------LEREIEALGpvnllaieeyE 791
|
570 580
....*....|....*....|....*.
gi 12655864 883 TYKEHLNSMVVERQQLLQDLEDLRNV 908
Cdd:COG1196 792 ELEERYDFLSEQREDLEEARETLEEA 817
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
679-978 |
2.92e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 679 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgltqELEQFHQEQLTSLVE 758
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKR----ELERIRQEEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 759 KhTLEKEELRKELLEKHQR---ELQEGREK--METECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQ 833
Cdd:pfam17380 376 R-MRELERLQMERQQKNERvrqELEAARKVkiLEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 834 QREEKSQWEfekdELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVE---RQQLLQDLEDLRN-VS 909
Cdd:pfam17380 455 EQERQQQVE----RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEerkRKLLEKEMEERQKaIY 530
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12655864 910 ETQQSmlsdQILELKSSHKRELREREEVlcqagaSEQLASQRLERLEMEHDQERQEMMSKLLAMENIHK 978
Cdd:pfam17380 531 EEERR----REAEEERRKQQEMEERRRI------QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-1293 |
4.81e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 4.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 360 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRK 439
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 440 EREQILqqagKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLdpssAEFFLQEERLTQM 519
Cdd:TIGR02169 238 QKEAIE----RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI----GELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 520 RNEYERQCRVLQDQVDELQSELEEYRaqgrvlrlplknspsEEVEANSGGIEPEhglgseecnplnmSIEAELVIEQMKE 599
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLL---------------AEIEELEREIEEE-------------RKRRDKLTEEYAE 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 600 qhhrdiccLRLELEDKVRhyekQLDETVVSCKKAQENMKQRhenethtlEKQISDLKNEIAELQGQaavlkeahheatcr 679
Cdd:TIGR02169 362 --------LKEELEDLRA----ELEEVDKEFAETRDELKDY--------REKLEKLKREINELKRE-------------- 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 680 heeekkqlQVKLEEEKTHLQEKLRlQHEMELkARLTQAQASFEREREGLQssawteEKVRGLTQELEQFhQEQLTSLVEK 759
Cdd:TIGR02169 408 --------LDRLQEELQRLSEELA-DLNAAI-AGIEAKINELEEEKEDKA------LEIKKQEWKLEQL-AADLSKYEQE 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 760 HTLEKEELRKelLEKHQRELQegREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLE---GRYRQELKDLQEQQRE 836
Cdd:TIGR02169 471 LYDLKEEYDR--VEKELSKLQ--RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVaqlGSVGERYATAIEVAAG 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 837 EKSQWEFEKDELTqeCAEAQELLKETlKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRN-VSETQQSM 915
Cdd:TIGR02169 547 NRLNNVVVEDDAV--AKEAIELLKRR-KAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPaFKYVFGDT 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 916 LSDQILELKSSHKRELRE---REEVLCQAGA--SEQLASQRLERLEMEHDQERQEMMSKLLAMEnihkatcetadRERAE 990
Cdd:TIGR02169 624 LVVEDIEAARRLMGKYRMvtlEGELFEKSGAmtGGSRAPRGGILFSRSEPAELQRLRERLEGLK-----------RELSS 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 991 MSTEISRLQSKIKEMQQATSPLSmlqngcQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATE 1070
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDAS------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1071 ISRLQQRLQKLEPGLvmSSCLDEPATEFFGNTAEQTEpFLQQNRTKQVEGV-------TRRHVLSDLEDDEVRDLGSTG- 1142
Cdd:TIGR02169 767 IEELEEDLHKLEEAL--NDLEARLSHSRIPEIQAELS-KLEEEVSRIEARLreieqklNRLTLEKEYLEKEIQELQEQRi 843
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1143 --TSSVQRQEAKIEESEASVEGF-SELENSE-----------ETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLL 1208
Cdd:TIGR02169 844 dlKEQIKSIEKEIENLNGKKEELeEELEELEaalrdlesrlgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1209 FDVSVLKKKLKMLERIP---EASPKYKLLYEDVSRENDCLQEELRMMET-------RYDEALENNKELTAEVFRLQDELK 1278
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKgedEEIPEEELSLEDVQAELQRVEEEIRALEPvnmlaiqEYEEVLKRLDELKEKRAKLEEERK 1003
|
970
....*....|....*
gi 12655864 1279 KMEEVTETFLSLEKS 1293
Cdd:TIGR02169 1004 AILERIEEYEKKKRE 1018
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
755-1622 |
8.92e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 8.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 755 SLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL-----EGRYRQELKD 829
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyldyLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 830 LQEQQREEKSQWEFEKDELTQECAEAQELLKEtlKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVS 909
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKE--NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 910 ETQQSMLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIhkatcETADRERA 989
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL-----SSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 990 EMSTEISRLQSKIKEMQQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSL---------------- 1053
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELkllkdelelkksedll 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1054 QRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEPFLQQNRTkQVEGVTRRHVLSDLEDD 1133
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV-AVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1134 EVRDLGSTGTSSVQRQEAKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSV 1213
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1214 LKKKLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNK---ELTAEVFRLQDELKKMEEVTETFLSL 1290
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKaesELAKEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1291 EKSYDEVKIENEELNvLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEEcvprvrsvhhvIEEC 1370
Cdd:pfam02463 714 KLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA-----------EERE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1371 KQENQYLEGNTQLLEKVKAHEIAWLhgtIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRK 1450
Cdd:pfam02463 782 KTEKLKVEEEKEEKLKAQEEELRAL---EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1451 LKERVTILVKQKDVLSHGEKEEELKammhdlqitcsEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTL 1530
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQK-----------LKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1531 YWNSGRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEML-CQKEKEPG 1609
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKErLEEEKKKL 1007
|
890
....*....|...
gi 12655864 1610 NSALEEREQEKFN 1622
Cdd:pfam02463 1008 IRAIIEETCQRLK 1020
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-547 |
1.23e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 359 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDkaeklkslmasEVDDHHAAIERRNEYNLRKLD-EEYKERIAALKNEL 437
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-----------ALQERREALQRLAEYSWDEIDvASAEREIAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 438 R---------KEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPSSAE 508
Cdd:COG4913 678 ErldassddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|....*....
gi 12655864 509 fFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ 547
Cdd:COG4913 758 -ALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
648-871 |
1.37e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 648 LEKQISDLKNEIAELQGQAAVLKEAHHEATcrHEEEKKQLQVKLEEekthLQEKLRlqhemELKARLTQAQASFEREREG 727
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD--LSEEAKLLLQQLSE----LESQLA-----EARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 728 LQSSAWTEEKVrgLTQELEQFHQEQLTSLvekhTLEKEELRKELLEKH------QRELQEGREKMETECNRRTSQIEAQF 801
Cdd:COG3206 249 LGSGPDALPEL--LQSPVIQQLRAQLAEL----EAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 802 QsdcqkVTERCESALQSLEGRYRQELKDLQEQQREEKsqwefekdELTQECAEAQELLKETLKREKTTSL 871
Cdd:COG3206 323 E-----ALQAREASLQAQLAQLEARLAELPELEAELR--------RLEREVEVARELYESLLQRLEEARL 379
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
442-1320 |
1.74e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 442 EQILQQAGKQRLELEQEIEKAKtEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPSSAEFFLQEERLTQMRN 521
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSR-LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 522 EYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEveansggiepehglgSEECNPLNMSIEAELVIEQMKEqh 601
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE---------------EKLAQVLKENKEEEKEKKLQEE-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 602 HRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAhheatcrhE 681
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE--------E 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 682 EEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHT 761
Cdd:pfam02463 359 EELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 762 LEKEELRKElLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQW 841
Cdd:pfam02463 439 IELKQGKLT-EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 842 EFEKDELTQeCAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQIL 921
Cdd:pfam02463 518 DGVGGRIIS-AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAV 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 922 ELKSSHKRELREREEVLCqaGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSK 1001
Cdd:pfam02463 597 LEIDPILNLAQLDKATLE--ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKE 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1002 IKEMQQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQR-----------AHEQAVKENVKMATE 1070
Cdd:pfam02463 675 LLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQeaqdkineelkLLKQKIDEEEEEEEK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1071 ISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEPFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQE 1150
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1151 AKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQD-LLFDVSVLKKKLKMLERIPEASP 1229
Cdd:pfam02463 835 LEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESkEEKEKEEKKELEEESQKLNLLEE 914
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1230 KYKLLYEDVSRENDCLQEELRMMET-----RYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEEL 1304
Cdd:pfam02463 915 KENEIEERIKEEAEILLKYEEEPEEllleeADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDE 994
|
890
....*....|....*.
gi 12655864 1305 NVLVLRLQGKIEKLQE 1320
Cdd:pfam02463 995 LEKERLEEEKKKLIRA 1010
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-906 |
1.96e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 370 RHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY---KERIAALKNELRKER 441
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELerlEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 442 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLA--------LSLKENSRLEnELLENAENVLAEkfgdLDPSSAEFFLQE 513
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRArleallaaLGLPLPASAE-EFAALRAEAAAL----LEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 514 ERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGrvlrlplKNSPSEEVEANSggiEPEHGLGSEEcnpLNMSIEAELV 593
Cdd:COG4913 405 EALAEAEAALRD----LRRELRELEAEIASLERRK-------SNIPARLLALRD---ALAEALGLDE---AELPFVGELI 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 594 ieQMKEQH-------------HRdiccLRL----ELEDKVRHY------EKQLDETVVSCKKAQENMKQRHENE-THTLE 649
Cdd:COG4913 468 --EVRPEEerwrgaiervlggFA----LTLlvppEHYAAALRWvnrlhlRGRLVYERVRTGLPDPERPRLDPDSlAGKLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 650 KQISDLKNEI-AELQGQAAVLKEAHHEA-----------------TCRHE---------------------EEKKQLQVK 690
Cdd:COG4913 542 FKPHPFRAWLeAELGRRFDYVCVDSPEElrrhpraitragqvkgnGTRHEkddrrrirsryvlgfdnraklAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 691 LEEEKTHLQEKLRlqhemELKARLTQAQASFEREReGLQSSAWTEEKVRGLTQELEQfHQEQLTSLvEKHTLEKEELRKE 770
Cdd:COG4913 622 LEEELAEAEERLE-----ALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAE-LEAELERL-DASSDDLAALEEQ 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 771 lLEKHQRELQEGREKMEtECNRRTSQIEAQFQsDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKdeltq 850
Cdd:COG4913 694 -LEELEAELEELEEELD-ELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER----- 765
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 12655864 851 ecaEAQELLKETLKREKTTslvLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLR 906
Cdd:COG4913 766 ---ELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLP 815
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
724-1579 |
2.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 724 EREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKEL--LEKHQRELQEGREKMETECNRRTSQIE--- 798
Cdd:TIGR02169 199 QLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLasLEEELEKLTEEISELEKRLEEIEQLLEeln 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 799 -----------AQFQSDCQKVT---ERCESALQSLEgryrQELKDLQEQQR---EEKSQWEFEKDELTQECAEAQ---EL 858
Cdd:TIGR02169 279 kkikdlgeeeqLRVKEKIGELEaeiASLERSIAEKE----RELEDAEERLAkleAEIDKLLAEIEELEREIEEERkrrDK 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 859 LKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQiLELKSSHKRELREREEVL 938
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAE-TRDELKDYREKLEKLKREINELKRELDRLQEE-LQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 939 CQAGAseQLASQRLE-RLEMEHDQERQEMMSKLLamenihkatcETADRERAEMSTEISRLQSKIKEMQQAtspLSMLQN 1017
Cdd:TIGR02169 433 EAKIN--ELEEEKEDkALEIKKQEWKLEQLAADL----------SKYEQELYDLKEEYDRVEKELSKLQRE---LAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1018 GCQVIGEEEVEGDGALSLLQQGEQ----LLEENGDVLLSLQRAHEQA---------VKENVKMATEISRLQQR------- 1077
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEVAagnrlnnvvVEDDAVAKEAIELLKRRkagratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1078 --LQKLEPGLVMSSCLDEP-ATEFFGNTAEQTEPFlqQNRTKQVEGVTRrhVLSDLEddEVRDLGstGTSSVQRQEAKIE 1154
Cdd:TIGR02169 578 lpLNKMRDERRDLSILSEDgVIGFAVDLVEFDPKY--EPAFKYVFGDTL--VVEDIE--AARRLM--GKYRMVTLEGELF 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1155 ESEASVEGFSelenseetRTESWELKNQISQLQEQLMMlcadcdraSEKKQDLlfdvsvlkkklkmleripeaspkykll 1234
Cdd:TIGR02169 650 EKSGAMTGGS--------RAPRGGILFSRSEPAELQRL--------RERLEGL--------------------------- 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1235 yedvSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFL----SLEKSYDEVKIENEELNVLVLR 1310
Cdd:TIGR02169 687 ----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleELEEDLSSLEQEIENVKSELKE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1311 LQGKIEKLQESVVQrcdcclWEASLENLEIEPDGNIL-QLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKA 1389
Cdd:TIGR02169 763 LEARIEELEEDLHK------LEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1390 HEiawlhgtiqthqerprvQNQVILeenttllgFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgE 1469
Cdd:TIGR02169 837 EL-----------------QEQRID--------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK--K 889
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1470 KEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN------EEDSISNLKLGTLYWNSGRMRQKTET 1543
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRA 969
|
890 900 910
....*....|....*....|....*....|....*.
gi 12655864 1544 VKQENAAVQKMVENLKKQISELKIKNQQLDLENTEL 1579
Cdd:TIGR02169 970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1429-1674 |
4.31e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 4.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1429 QHQATIAELELEKTKLQELTRKLKErvtilvKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSI 1508
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE------LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1509 LRNEITTLNEEDSISNLKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQI----SELKIKNQQLDLENTELSQKNS 1584
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELeeaeEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1585 QNQEKLQELNQRLTEML-CQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLK 1663
Cdd:COG1196 373 ELAEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250
....*....|.
gi 12655864 1664 DELEKMKQLHR 1674
Cdd:COG1196 453 ELEEEEEALLE 463
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-938 |
4.36e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 315 QEEGIENSQEILKALDFSLDGNINLTELTLALEYELLVTKNSTHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 394
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 395 KLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRL- 473
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILe 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 474 -ALSLKENSRLENELLENAENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLR 552
Cdd:pfam02463 434 eEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 553 LPLKNSPSEEVEANSGGIEpEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKK 632
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 633 ----------------------AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVK 690
Cdd:pfam02463 593 siavleidpilnlaqldkatleADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELT 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 691 LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKE 770
Cdd:pfam02463 673 KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 771 LLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQ--KVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDEL 848
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVeeEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 849 TQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVErqqLLQDLEDLRNVSETQQSMLSDQILELKSSHK 928
Cdd:pfam02463 833 EELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE---LEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
650
....*....|
gi 12655864 929 RELREREEVL 938
Cdd:pfam02463 910 NLLEEKENEI 919
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
362-1078 |
4.89e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 4.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 362 LASFKAEIRHLLERVDQV--VREKEKL---RSDLDKAEKLKSLMASEvdDHHAAIERRNEYNLRKLDEEYK------ERI 430
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESneLHEKQKFylrQSVIDLQTKLQEMQMER--DAMADIRRRESQSQEDLRNQLQntvhelEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 431 AALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPS----S 506
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisylK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 507 AEFFLQEERLTQMRNEYERQCRVL----QDQVDELQSELEEyraqgRVLRLPLKNSpSEEVEANSggIEPEHGLGSEECN 582
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLlqqhQDRIEQLISEHEV-----EITGLTEKAS-SARSQANS--IQSQLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 583 PLNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQL---DETVVSCKKAQENMKQRHENETHTLEKQISDLKNE 658
Cdd:pfam15921 310 NQNSMYMRQLSdLESTVSQLRSELREAKRMYEDKIEELEKQLvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 659 IAEL-----QGQAAVLKEAHHEATCRHeeekkqLQVKLEEEKTHLQeklRLqhEMELKARLTQAQASFEREREGLQSSAW 733
Cdd:pfam15921 390 EKELslekeQNKRLWDRDTGNSITIDH------LRRELDDRNMEVQ---RL--EALLKAMKSECQGQMERQMAAIQGKNE 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 734 TEEKVRGLTQELEQfhqeqltslvekhtlekeelRKELLEKHQRELQEgrEKMETECNRRT-SQIEAQFQSDcQKVTERC 812
Cdd:pfam15921 459 SLEKVSSLTAQLES--------------------TKEMLRKVVEELTA--KKMTLESSERTvSDLTASLQEK-ERAIEAT 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 813 ESALQSLEGRYRQELKDLQEQQREEksqwefekDELTQECAEAQELLKETLKREKTTSlVLTQEREMLEKTYKEH---LN 889
Cdd:pfam15921 516 NAEITKLRSRVDLKLQELQHLKNEG--------DHLRNVQTECEALKLQMAEKDKVIE-ILRQQIENMTQLVGQHgrtAG 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 890 SMVVERQQLLQDLEDlRNVSETQQSMLSDQilelKSSHKRELRER------EEVLCQAGASEQLASQRleRLEMEHDQER 963
Cdd:pfam15921 587 AMQVEKAQLEKEIND-RRLELQEFKILKDK----KDAKIRELEARvsdlelEKVKLVNAGSERLRAVK--DIKQERDQLL 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 964 QEMMSKLLAMENIHKATcETADRERAEMSTEISRLQSKIK-EMQQATSPLSMLQNGCQVIgeEEVEGDGALSLLQQGEQL 1042
Cdd:pfam15921 660 NEVKTSRNELNSLSEDY-EVLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTRNTLKSM--EGSDGHAMKVAMGMQKQI 736
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 12655864 1043 LEENG--DVLLS----LQRAHEQAVKENVKMATEISRLQQRL 1078
Cdd:pfam15921 737 TAKRGqiDALQSkiqfLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
382-881 |
5.75e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 5.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 382 EKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDE----------EYKERIAALK---------NELRKERE 442
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaEEKKKADEAKkkaeeakkaDEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 443 QILQQA---GKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPSSAEFFLQEERLTQM 519
Cdd:PTZ00121 1326 EAKKKAdaaKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 520 RNEYERQCRVLQDQVDELQSELEEYRAQGRvlrlpLKNSPSEEVEANSGGIEPEHGLGSEECN-PLNMSIEAELVIEQMK 598
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKKADE-----AKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKKKAE 1480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 599 EQHHRDicclrlELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNeiAELQGQAAVLKEAhhEATC 678
Cdd:PTZ00121 1481 EAKKAD------EAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKK--AEEAKKADEAKKA--EEKK 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 679 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMEL------------KARLTQAQASFEREREGLQSSAWTEEKVRGLTQEL- 745
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELk 1626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 746 ----EQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGR----EKMETECNRRTSQIEAQFQSDCQKVTERCESA-- 815
Cdd:PTZ00121 1627 kaeeEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKkaeeDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAee 1706
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12655864 816 LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 881
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
356-930 |
6.73e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 356 STHQAALASFKAEIRHLLERVDQVVREK-EKLRSDLDKAEKLKSLMaSEVDDHHAAIERrneyNLRKLDEEYKERIAALK 434
Cdd:pfam12128 311 SAADAAVAKDRSELEALEDQHGAFLDADiETAAADQEQLPSWQSEL-ENLEERLKALTG----KHQDVTAKYNRRRSKIK 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 435 NELRKEREQILQQAGKQRleleQEIEKAKTEENYIRDRLALSLKENSRLENELLENAENVLAEKFGDLDPSSAEFFLQEE 514
Cdd:pfam12128 386 EQNNRDIAGIKDKLAKIR----EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPE 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 515 RLTQMRNEyerqcrvlQDQVDELQSELEEYRAQgrVLRLplknsPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVI 594
Cdd:pfam12128 462 LLLQLENF--------DERIERAREEQEAANAE--VERL-----QSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 595 EQMKEQHHRDICCLRLELEDKVRHYEK----------QLDETVVSCKKAQEN--------MKQRHENETHTLEKQisdlk 656
Cdd:pfam12128 527 LQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhrtDLDPEVWDGSVGGELnlygvkldLKRIDVPEWAASEEE----- 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 657 neiaeLQGQAAVLKEAHHEATCRHEEEKKQLqVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEE 736
Cdd:pfam12128 602 -----LRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 737 KVRGLTQELEQFhQEQLTSLVEKHTLEKEELRKELLEKHQRELQ-----------------EGREKMETECNRRTSQIEA 799
Cdd:pfam12128 676 RKDSANERLNSL-EAQLKQLDKKHQAWLEEQKEQKREARTEKQAywqvvegaldaqlallkAAIAARRSGAKAELKALET 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 800 QFQSDCQK------VTERCESALQSLEGRYRQELKDLQEQQREE---KSQWEFEKDELTQECAE---AQELLKETLKRE- 866
Cdd:pfam12128 755 WYKRDLASlgvdpdVIAKLKREIRTLERKIERIAVRRQEVLRYFdwyQETWLQRRPRLATQLSNierAISELQQQLARLi 834
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12655864 867 ---KTTSLVLTQEREMLEKTYKE--HLNSMVVERQQLLQDLEDLRNVSETQQSM--LSDQILELKSSHKRE 930
Cdd:pfam12128 835 adtKLRRAKLEMERKASEKQQVRlsENLRGLRCEMSKLATLKEDANSEQAQGSIgeRLAQLEDLKLKRDYL 905
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1498-1940 |
8.75e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1498 ESEKLQQENSILRNEITTLNEEDSISNLKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISelkiKNQQLDLENT 1577
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQIS 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1578 ELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCK----------VQSSTLVSSLEAELSE 1647
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEK---------TTEISNTQTQLNQLKDEQNKIKkqlsekqkelEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1648 VKIQTHIVQQE-----NHLLKDELEKMKQLHRC--PDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSsllE 1720
Cdd:TIGR04523 293 LKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK---Q 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1721 HRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKS 1800
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1801 WAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERSQTMVQEHQ---SRLTHSREKVRQLESNLLPKHQKHLNP 1877
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKklnEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12655864 1878 SGTMNPTEQEKLSLKRECDQFQKEQSPANRKvSQMNSLEQELETIHLENEGLKKKQVKLDEQL 1940
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELKKENLE-KEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
380-965 |
1.24e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 380 VREKEKLRsdldKAEKLKSLMASEvddhHAAIERRNEyNLRKLDEEYKERIAALKNELRKEREQIlQQAGKQRLELEQEI 459
Cdd:PTZ00121 1187 VRKAEELR----KAEDARKAEAAR----KAEEERKAE-EARKAEDAKKAEAVKKAEEAKKDAEEA-KKAEEERNNEEIRK 1256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 460 EKAKTEENYIRDRLALSLKEnSRLENELLENAENVLAEKFGDLDP-SSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQ 538
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEE-ARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 539 SELEEYRAQGRVLRLPLKNSpSEEVEANSGGIEPEHGLGSEEcnplnmSIEAELVIEQMKEQHHRDicclrlELEDKVRH 618
Cdd:PTZ00121 1336 KKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKAEE 1402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 619 YEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHL 698
Cdd:PTZ00121 1403 DKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 699 QEKLRLQHEMELKARLTQAQAsfererEGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEK----EELRKELLEK 774
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKA------DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaEEKKKADELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 775 HQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREE----------KSQWEFE 844
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeakikaeelKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 845 KDELTQECAEAQELLK-ETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQsmlsdQILEL 923
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-----KAEEL 1707
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 12655864 924 KSSHKRELREREEVlcqaGASEQLASQRLERLEMEHDQERQE 965
Cdd:PTZ00121 1708 KKKEAEEKKKAEEL----KKAEEENKIKAEEAKKEAEEDKKK 1745
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
368-545 |
1.27e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE---RIAALKNELRKEREQI 444
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEleeEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 445 lqqagkQRLE----LEQEIEKAKTEENYI-------RDRLALSLKENSRLENELLENAEN-------VLAEKFGDLDPSS 506
Cdd:PRK05771 124 ------ERLEpwgnFDLDLSLLLGFKYVSvfvgtvpEDKLEELKLESDVENVEYISTDKGyvyvvvvVLKELSDEVEEEL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 12655864 507 AEFFLQEERL------TQMRNEYERQCRVLQDQVDELQSELEEYR 545
Cdd:PRK05771 198 KKLGFERLELeeegtpSELIREIKEELEEIEKERESLLEELKELA 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-907 |
1.71e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 357 THQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSlmasEVDDHHAAIERRNEynlrKLDEEYKERiAALKNE 436
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE----ELETLEAEIEDLRE----TIAETERER-EELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 437 LRKEREQilqqagkqRLELEQEIEKAkteenyiRDRLALSLKENSRLENEL--LENAENVLAEKFGDLDPSSAEFFLQEE 514
Cdd:PRK02224 281 VRDLRER--------LEELEEERDDL-------LAEAGLDDADAEAVEARReeLEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 515 RLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLK--NSPSEEVEANSGGIEPEHGlgseecnplNMSIEAEL 592
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEelEEEIEELRERFGDAPVDLG---------NAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 593 VIEQmKEQHHRDICCLRLEL---EDKVRHYEKQLDETvvSCKK-AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 668
Cdd:PRK02224 417 LREE-RDELREREAELEATLrtaRERVEEAEALLEAG--KCPEcGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 669 LKEAHHEATC---------RHEEEKKQLQVKLEEEKTHLQEK------LRLQ---HEMELKARLTQAQASFEREREGLQS 730
Cdd:PRK02224 494 VEERLERAEDlveaedrieRLEERREDLEELIAERRETIEEKreraeeLRERaaeLEAEAEEKREAAAEAEEEAEEAREE 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 731 SAWTEEKVRGLTQELEQFHQ-EQLTSLVEKHTLEKEELRKELLEKHQRELQEgREKMEtECNRRTSQIEAQFQSDcqkvt 809
Cdd:PRK02224 574 VAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREALAELNDER-RERLA-EKRERKRELEAEFDEA----- 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 810 eRCESALQSlegryRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLK-REKTTSLVLTQER--------EML 880
Cdd:PRK02224 647 -RIEEARED-----KERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElRERREALENRVEAlealydeaEEL 720
|
570 580
....*....|....*....|....*..
gi 12655864 881 EKTYKEHLNSMvveRQQLLQDLEDLRN 907
Cdd:PRK02224 721 ESMYGDLRAEL---RQRNVETLERMLN 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1205-1942 |
1.96e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1205 QDLLFDvsvLKKKLKMLERIPEASPKYKLLYEDVSR-ENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEV 1283
Cdd:TIGR02168 192 EDILNE---LERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1284 TET----FLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESvvqrcdcclwEASLENLEIEPDGNILQLNQTLEECVPR 1359
Cdd:TIGR02168 269 LEElrleVSELEEEIEELQKELYALANEISRLEQQKQILRER----------LANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1360 VRSVHHVIEEckqenqyLEGNTQLLEKvkahEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELEL 1439
Cdd:TIGR02168 339 LAELEEKLEE-------LKEELESLEA----ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1440 EKTKLQELTRKLKERVTILVKQ---KDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTL 1516
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKleeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1517 NEE-DSISNLKlgtlywnsGRMRQKTETVKQE------------------------------------NAAVQKMVENLK 1559
Cdd:TIGR02168 488 QARlDSLERLQ--------ENLEGFSEGVKALlknqsglsgilgvlselisvdegyeaaieaalggrlQAVVVENLNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1560 KQISELKIKNQQ------LDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEK----------------EPGNSALEERE 1617
Cdd:TIGR02168 560 KAIAFLKQNELGrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggvlvvDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1618 QEKFN-----LKEEL---------ERCKVQSSTLvsSLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcpDLSDFQQ 1683
Cdd:TIGR02168 640 KLRPGyrivtLDGDLvrpggvitgGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAELRK-----ELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1684 KISSVlsynEKLLKEKEALSEELNSCVDKL-AKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVN 1762
Cdd:TIGR02168 713 ELEQL----RKELEELSRQISALRKDLARLeAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1763 LQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGgkswapeiathpSGLHNQQKRLSwdkldhlmnEEQQLLWQENERS 1842
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLR------------ERLESLERRIA---------ATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1843 QTMvQEHQSRLTHSREKVRQLESNLLPKHQKHLNpsgTMNPTEQEKLSLKRECDQFQKEQSPANRKVS----QMNSLEQE 1918
Cdd:TIGR02168 848 EEL-SEDIESLAAEIEELEELIEELESELEALLN---ERASLEEALALLRSELEELSEELRELESKRSelrrELEELREK 923
|
810 820
....*....|....*....|....
gi 12655864 1919 LETIHLENEGLKKKQVKLDEQLME 1942
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSE 947
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
632-840 |
2.69e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 632 KAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEMELK 711
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQKEELAELLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 712 ARLtQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECN 791
Cdd:COG4942 120 PPL-ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 12655864 792 RRTSQIEAQFQSDCQKVTErcesaLQSLEGRYRQELKDLQEQQREEKSQ 840
Cdd:COG4942 199 KLLARLEKELAELAAELAE-----LQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
822-1627 |
5.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 822 RYRQELKDLQ--------EQQREEKSQWEFEKDELTQECAEAQELLKET---LKREKTTSLVLTQEREMLEKTYKEhLNS 890
Cdd:TIGR02168 217 ELKAELRELElallvlrlEELREELEELQEELKEAEEELEELTAELQELeekLEELRLEVSELEEEIEELQKELYA-LAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 891 MVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSSH---KRELREREEVLCQAGASEQLASQRLERLEMEhdqeRQEMM 967
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelAEELAELEEKLEELKEELESLEAELEELEAE----LEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 968 SKLLAMENIHkatcETADRERAEMSTEISRLQSKIKEM-QQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEqlLEEN 1046
Cdd:TIGR02168 372 SRLEELEEQL----ETLRSKVAQLELQIASLNNEIERLeARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1047 GDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSS----CLDEPATEFFGNTAEQTEPFLQQNRTKQVEGV- 1121
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarldSLERLQENLEGFSEGVKALLKNQSGLSGILGVl 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1122 -TRRHVLSDLEDDEVRDLGSTgtssvqRQEAKIEESEASVEGFSELENSEETRteswelknqisqlqeqLMMLCADCDRA 1200
Cdd:TIGR02168 526 sELISVDEGYEAAIEAALGGR------LQAVVVENLNAAKKAIAFLKQNELGR----------------VTFLPLDSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1201 SEKKQDLLFDVSVLKKKLKMLERIPEASPKYKLLYEDVSreNDCLqeelrmMETRYDEALENNKELTAE--VFRLQDEL- 1277
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL--GGVL------VVDDLDNALELAKKLRPGyrIVTLDGDLv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1278 KKMEEVTETFLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESVVQrcdcclWEASLENLEIEpdgnILQLNQTLEECV 1357
Cdd:TIGR02168 656 RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE------LRKELEELEEE----LEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1358 PRVRSVHHVIEECKQENQYLEgntqllekvkaHEIAWLHGTIQTHQERPRVQNQVILEENTTLlgfqdkhfqhqatiAEL 1437
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLE-----------ERIAQLSKELTELEAEIEELEERLEEAEEEL--------------AEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1438 ELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN 1517
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELR--AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1518 EEDSisnlklgtlywnsgRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRL 1597
Cdd:TIGR02168 859 AEIE--------------ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
810 820 830
....*....|....*....|....*....|
gi 12655864 1598 TEMlcqkekepgNSALEEREQEKFNLKEEL 1627
Cdd:TIGR02168 925 AQL---------ELRLEGLEVRIDNLQERL 945
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
589-1504 |
8.78e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 8.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 589 EAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 668
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 669 LKEahheatcrHEEEKKQLQVKLEEEKTHLQEKLRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF 748
Cdd:pfam02463 249 EQE--------EIESSKQEIEKEEEKLAQVLKENKE--EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 749 HQEQltslvekhtlekeelrkelLEKHQRELQEGREKMETECNRRTSQieaqfqsdcQKVTERCESALQSLEGRYRQELK 828
Cdd:pfam02463 319 SEKE-------------------KKKAEKELKKEKEEIEELEKELKEL---------EIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 829 DLQEQQREEKSQWEFEKDEltqecAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNV 908
Cdd:pfam02463 371 LEEELLAKKKLESERLSSA-----AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGK 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 909 SETQQSMLSDQILELKSshKRELREREEVLCQagaSEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRER 988
Cdd:pfam02463 446 LTEEKEELEKQELKLLK--DELELKKSEDLLK---ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 989 AEMSTEISRLQSKIKEMQQATSplsmLQNGCQVIGEEEVEGDGALsLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMA 1068
Cdd:pfam02463 521 GGRIISAHGRLGDLGVAVENYK----VAISTAVIVEVSATADEVE-ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIA 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1069 TEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEpflQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQR 1148
Cdd:pfam02463 596 VLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTEL---TKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELT 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1149 QEAKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQlmMLCADCDRASEKKQDLLFDVSVLKKKLKMLERIPEAS 1228
Cdd:pfam02463 673 KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK--KLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1229 PKYKLLYEDVSRENDCLQEELrmMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEELNVLV 1308
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSL--KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1309 LRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVK 1388
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1389 AHEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVtilvkqkDVLSHG 1468
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV-------NLMAIE 981
|
890 900 910
....*....|....*....|....*....|....*.
gi 12655864 1469 EKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQ 1504
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
355-803 |
1.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 355 NSTHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALK 434
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 435 NELRKEREQIlQQAGKQRLELEQEIEKAKTEENYIRDRLALSLkensrlENELLENAENVlaekfgdldpssaefflqeE 514
Cdd:COG4717 149 EELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLAT------EEELQDLAEEL-------------------E 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 515 RLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVI 594
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 595 EQmkeqhhrdICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHH 674
Cdd:COG4717 283 LG--------LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 675 EAtcrhEEEKKQLQVK-LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQL 753
Cdd:COG4717 355 EA----EELEEELQLEeLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL 430
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 12655864 754 TSLVEKHTLEKEELRKElLEKHQRELQEGREKMET-ECNRRTSQIEAQFQS 803
Cdd:COG4717 431 EEELEELEEELEELEEE-LEELREELAELEAELEQlEEDGELAELLQELEE 480
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
1491-1712 |
1.32e-04 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 47.04 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1491 KVELLRYESEKLQQENSILRNEITTLNEEDSISNLK--LGTLYWNSGRMRQKTETVKQENaaVQKMVENLKKQISELKIK 1568
Cdd:COG5059 351 EIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFayMQSLKKETETLKSRIDLIMKSI--ISGTFERKKLLKEEGWKY 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1569 NQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEV 1648
Cdd:COG5059 429 KSTLQFLRIEIDRLLLLREEELSKKKTKIHKLN--KLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRSH 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12655864 1649 KIQTHIVQQENHLLKDELEkmkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDK 1712
Cdd:COG5059 507 SKFRDHLNGSNSSTKELSL---------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDV 561
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1247-1944 |
1.36e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1247 EELRMMETRYDEALENNKELTAEVFRLQDELKKMEEvtetflsleksYDEVKIENEELNVLVLRLQGKIEKLQESVVQRc 1326
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAER-----------YQALLKEKREYEGYELLKEKEALERQKEAIER- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1327 DCCLWEASLENLEIEpdgnILQLNQTLEECVPRVRSVHHVIEEcKQENQYLEGNTQLLEkVKAhEIAWLHGTIQTHQERP 1406
Cdd:TIGR02169 245 QLASLEEELEKLTEE----ISELEKRLEEIEQLLEELNKKIKD-LGEEEQLRVKEKIGE-LEA-EIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1407 RvqnqvileenttllgfqdkhfQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCS 1486
Cdd:TIGR02169 318 E---------------------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT--EEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1487 EMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISELK 1566
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKE--------PGNSA----LEEREQEKFNLKEELERCK 1631
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLqreLAEAEAQaraseervRGGRAveevLKASIQGVHGTVAQLGSVG 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1632 VQSSTLV-SSLEAELSEVKIQTHIVQQEN-HLLKDE---------LEKMKQLHRCP-------------DLSDFQQKISS 1687
Cdd:TIGR02169 535 ERYATAIeVAAGNRLNNVVVEDDAVAKEAiELLKRRkagratflpLNKMRDERRDLsilsedgvigfavDLVEFDPKYEP 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1688 VLSY-------------------------------------------NEKLLKEKEALSEELNSCVDKLAKsslLEHRIA 1724
Cdd:TIGR02169 615 AFKYvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERLEG---LKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1725 TMKQEQKSWEHQSASLKSQLVASQEKV-------QNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKqlqnag 1797
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIgeiekeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA------ 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1798 gkswapEIATHPSGLHNQQkrlswDKLDHLMNEEQQLLWQENERSQTMVQEHQSRLthsREKVRQLESNLLPKHQKHLNP 1877
Cdd:TIGR02169 766 ------RIEELEEDLHKLE-----EALNDLEARLSHSRIPEIQAELSKLEEEVSRI---EARLREIEQKLNRLTLEKEYL 831
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12655864 1878 SGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQMNS----LEQELETIHLENEGLKKKQVKLDEQLMEMQ 1944
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleeLEAALRDLESRLGDLKKERDELEAQLRELE 902
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
611-860 |
1.41e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 611 ELEDKVRHYEKQLDEtvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAvlkeahheatcRHEEEKKQLQVK 690
Cdd:pfam01576 191 DLEERLKKEEKGRQE--------LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA-----------KKEEELQAALAR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 691 LEEE---KTHLQEKLRlqhemELKARLTQAQASFEREReglQSSAWTEEKVRGLTQELEQFHQEQltslveKHTLEKEEL 767
Cdd:pfam01576 252 LEEEtaqKNNALKKIR-----ELEAQISELQEDLESER---AARNKAEKQRRDLGEELEALKTEL------EDTLDTTAA 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 768 RKELLEKHQRELQEGREKMETEcnrrTSQIEAQFQSDCQKVTERCEsalqslegryrqELKDLQEQQREEKSQWEFEKDE 847
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEE----TRSHEAQLQEMRQKHTQALE------------ELTEQLEQAKRNKANLEKAKQA 381
|
250
....*....|...
gi 12655864 848 LTQECAEAQELLK 860
Cdd:pfam01576 382 LESENAELQAELR 394
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1575-1821 |
2.04e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1575 ENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHI 1654
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIR----ALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1655 VQQENHLLKDELEKMK----QLHRCPDL------SDFQQKISSvLSYNEKLLKEKEALSEELNSCVDKLAkssllehria 1724
Cdd:COG4942 95 LRAELEAQKEELAELLralyRLGRQPPLalllspEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1725 tmkQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPE 1804
Cdd:COG4942 164 ---ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*..
gi 12655864 1805 IATHPSGLHNQQKRLSW 1821
Cdd:COG4942 241 ERTPAAGFAALKGKLPW 257
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1529-1922 |
2.26e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1529 TLYWNSGRMRQKTETVKQenaaVQKMVENLKKQISELKiknQQLDLENTELSQK---NSQNQEKLQELNQRLTEMLCQKE 1605
Cdd:COG5022 804 SLLGSRKEYRSYLACIIK----LQKTIKREKKLRETEE---VEFSLKAEVLIQKfgrSLKAKKRFSLLKKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1606 kepgnsaLEEREQEKFNLKEELERckVQSSTLVSS-LEAELSEVKIQTHIVQQENHLLKDELEKM-KQLHRCPDLSDFQQ 1683
Cdd:COG5022 877 -------VELAERQLQELKIDVKS--ISSLKLVNLeLESEIIELKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPS 947
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1684 KISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvNL 1763
Cdd:COG5022 948 IEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL----PV 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1764 QMSRMKSDLRVTQQEKEALK-----QEVMSLHKQLQNAGGKSwAPEIATHPSGLHNQQKRLSWD----------KLDHLM 1828
Cdd:COG5022 1024 EVAELQSASKIISSESTELSilkplQKLKGLLLLENNQLQAR-YKALKLRRENSLLDDKQLYQLestenllktiNVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1829 NEEQQLLWQENERSQTMVQEHQSRLTH-SREKVRQLESNLLPKHQK-----HLNPSGTMNPTEQEKLSLKRECDQFQKEQ 1902
Cdd:COG5022 1103 VTNRNLVKPANVLQFIVAQMIKLNLLQeISKFLSQLVNTLEPVFQKlsvlqLELDGLFWEANLEALPSPPPFAALSEKRL 1182
|
410 420
....*....|....*....|....*..
gi 12655864 1903 SPAN-------RKVSQMNSLEQELETI 1922
Cdd:COG5022 1183 YQSAlydekskLSSSEVNDLKNELIAL 1209
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1253-1793 |
2.54e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1253 ETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEELNVLVLRLQGKIEKLqESVVQRCDCClwE 1332
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-EKEVKELEEL--K 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1333 ASLENLEIEpdgnILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEiawlhgtiqthqerprvqnqv 1412
Cdd:PRK03918 238 EEIEELEKE----LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA--------------------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1413 ilEENTTLLGFQDKHFQhqaTIAELELEKTKLQELTRKLKERVtilvkqKDVLSHGEKEEELKAMMHDLQITCSEMQQKV 1492
Cdd:PRK03918 293 --EEYIKLSEFYEEYLD---ELREIEKRLSRLEEEINGIEERI------KELEEKEERLEELKKKLKELEKRLEELEERH 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1493 ELLRYESEKLQQENSiLRNEITTLNEEDSISNLKLgtLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQL 1572
Cdd:PRK03918 362 ELYEEAKAKKEELER-LKKRLTGLTPEKLEKELEE--LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1573 DLENTELSQKNSQN-------------------QEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQ 1633
Cdd:PRK03918 439 PVCGRELTEEHRKElleeytaelkriekelkeiEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1634 SstlVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALS----EELNSC 1709
Cdd:PRK03918 519 E---LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK--KLAELEKKLDELEEELAELLKELEELGfesvEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1710 VDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSdlRVTQQEKEALKQEVMSL 1789
Cdd:PRK03918 594 LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLEL 671
|
....
gi 12655864 1790 HKQL 1793
Cdd:PRK03918 672 SREL 675
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
424-1000 |
3.16e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 424 EEYKERIA----ALKNELRKEREQIL----QQAGKQRLELEQEIEKAKTEENYIRDRLAlSLKENSRLENELLENAENVL 495
Cdd:PRK02224 165 EEYRERASdarlGVERVLSDQRGSLDqlkaQIEEKEEKDLHERLNGLESELAELDEEIE-RYEEQREQARETRDEADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 496 AEkfgdldpssaefflQEERLTQMrNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLknspsEEVEANSGGIEPEHG 575
Cdd:PRK02224 244 EE--------------HEERREEL-ETLEAEIEDLRETIAETEREREELAEEVRDLRERL-----EELEEERDDLLAEAG 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 576 LGSeecnplnMSIEAelvIEQMKEqhhrdicclrlELEDKvrhyEKQLDETVVSCKKAQenmkQRHENETHTLEKQISDL 655
Cdd:PRK02224 304 LDD-------ADAEA---VEARRE-----------ELEDR----DEELRDRLEECRVAA----QAHNEEAESLREDADDL 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 656 KNEIAELQGQAAVLkEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM--ELKARLTQAQASFEREREGLQSSAW 733
Cdd:PRK02224 355 EERAEELREEAAEL-ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgNAEDFLEELREERDELREREAELEA 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 734 TEEKVRGLTQELEQFHQE----------QLTSLVEkhTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQS 803
Cdd:PRK02224 434 TLRTARERVEEAEALLEAgkcpecgqpvEGSPHVE--TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 804 D-----CQKVTERCESALQSLEGR--YRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKEtLKREKTTslvLTQE 876
Cdd:PRK02224 512 ErleerREDLEELIAERRETIEEKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE-LNSKLAE---LKER 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 877 REMLEKtykehLNSMVVERQQLLQDLEDLRNVSETQQSM--LSDQILELKSSHKRELRER--EEVLCQAGASEQLASQRL 952
Cdd:PRK02224 588 IESLER-----IRTLLAAIADAEDEIERLREKREALAELndERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYL 662
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 12655864 953 ERLEMEHDQ---ERQEMMSKLLAMENIHKATCETADReRAEMSTEISRLQS 1000
Cdd:PRK02224 663 EQVEEKLDElreERDDLQAEIGAVENELEELEELRER-REALENRVEALEA 712
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1429-1778 |
3.27e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 46.09 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1429 QHQATIAELELEKTKLQELTRklkervtilVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVEL-LRYESEKLQQENS 1507
Cdd:pfam15818 68 QLQMKMCALEEEKGKYQLATE---------IKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLhLLAKEDHHKQLNE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1508 ILRNEITTLNeedsisnlKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISELK--IKNQQLDL----------- 1574
Cdd:pfam15818 139 IEKYYATITG--------QFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKkeLKKVTSDLikskvtcqykm 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1575 --ENTELSQKnsqnQEKLQELNQRLT-EMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQ 1651
Cdd:pfam15818 211 geENINLTIK----EQKFQELQERLNmELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKEN 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1652 THIVQQENHLLKdelEKMKQlhrcpdlsdFQQKISSVLSYNEKLL----KEKEALSEELNSCVDKLakSSLLEHRIATMK 1727
Cdd:pfam15818 287 NQTLERDNELQR---EKVKE---------NEEKFLNLQNEHEKALgtwkKHVEELNGEINEIKNEL--SSLKETHIKLQE 352
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 12655864 1728 QEQKSWEHQSaslksqlVASQEKVQNLEDtVQNVNLQMSRMKSDLRVTQQE 1778
Cdd:pfam15818 353 HYNKLCNQKK-------FEEDKKFQNVPE-VNNENSEMSTEKSENLIIQKY 395
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
316-906 |
3.84e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 316 EEGIENSQEILKALDFSLDgninlteltlALEYELLVTKN-----STHQAALASFKAEIRHLLERVDQVVREKEKLRSDL 390
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIE----------RLEKFIKRTENieeliKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 391 DKAEKLKSLMASevddhhaaIERRN---EYNLRKLDE---EYKERIAALKNELRKEREQI-----LQQAGKQRLELEQEI 459
Cdd:PRK03918 231 KELEELKEEIEE--------LEKELeslEGSKRKLEEkirELEERIEELKKEIEELEEKVkelkeLKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 460 EKAKTEENYIRDRLalslkenSRLENELlenaeNVLAEKFGDLDPSSAEFFLQEERLTQMRNEYER---------QCRVL 530
Cdd:PRK03918 303 EEYLDELREIEKRL-------SRLEEEI-----NGIEERIKELEEKEERLEELKKKLKELEKRLEEleerhelyeEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 531 QDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEansggiEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRL 610
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIE------EEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 611 ELEDkvrHYEKQLDETVVSCKKAQENMKqrhenethTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRH-----EEEKK 685
Cdd:PRK03918 445 LTEE---HRKELLEEYTAELKRIEKELK--------EIEEKERKLRKELRELEKVLKKESELIKLKELAEqlkelEEKLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 686 QLQVKLEEEKTHLQEKLRlQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEqLTSLVEKHTLEKE 765
Cdd:PRK03918 514 KYNLEELEKKAEEYEKLK-EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE-LEELGFESVEELE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 766 ELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQwefEK 845
Cdd:PRK03918 592 ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE---EY 668
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12655864 846 DELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERqqLLQDLEDLR 906
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK--ALERVEELR 727
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
466-1007 |
5.68e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 5.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 466 ENYIRDRLALSLKENSRLENELLENAENVLAE--------KFGDLDPSSAEFFLQEERLTqMRNEYERQCRVLQDQVDEL 537
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESaelrlshlHFGYKSDETLIASRQEERQE-TSAELNQLLRTLDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 538 QSEL-----------EEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEeCNPLNMSIEAElvieqmkEQHHRDIc 606
Cdd:pfam12128 303 RDELngelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE-LENLEERLKAL-------TGKHQDV- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 607 clrleledkVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEiaeLQGQAAVLKEAHHEATCRHEEEKKQ 686
Cdd:pfam12128 374 ---------TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD---LQALESELREQLEAGKLEFNEEEYR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 687 LQVKLEEEKTHL-------QEKLRLQHEMEL--KARLTQAQASFERER---EGLQSSAWTEEKVRGLTQElEQFHQEQLT 754
Cdd:pfam12128 442 LKSRLGELKLRLnqatatpELLLQLENFDERieRAREEQEAANAEVERlqsELRQARKRRDQASEALRQA-SRRLEERQS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 755 SLVEKHT---------------------------LEKEELRKELLEKHQRELQEGREK-------------------MET 788
Cdd:pfam12128 521 ALDELELqlfpqagtllhflrkeapdweqsigkvISPELLHRTDLDPEVWDGSVGGELnlygvkldlkridvpewaaSEE 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 789 ECNRRTSQIEAQFQSDcQKVTERCESALQSLEG----------RYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQEL 858
Cdd:pfam12128 601 ELRERLDKAEEALQSA-REKQAAAEEQLVQANGelekasreetFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDS 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 859 LKETL-KREKTTSLVLTQEREMLEKTyKEHLNSMVVERQQLLQDLEDLRNVsetQQSMLSDQILELKSSHKRELREREEV 937
Cdd:pfam12128 680 ANERLnSLEAQLKQLDKKHQAWLEEQ-KEQKREARTEKQAYWQVVEGALDA---QLALLKAAIAARRSGAKAELKALETW 755
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 12655864 938 LCQAGASEQLASQRLERLEmehdQERQEMMSKLLAME-NIHKATC------ETADRERAEMSTEISRLQSKIKEMQQ 1007
Cdd:pfam12128 756 YKRDLASLGVDPDVIAKLK----REIRTLERKIERIAvRRQEVLRyfdwyqETWLQRRPRLATQLSNIERAISELQQ 828
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
649-781 |
5.72e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 649 EKQISDLKNEiAELQGQAAVL--KEAHHEATCRHEEEKKQLQVKLEE-EKTHLQEKLRLQHEMELkarLTQAQASFERER 725
Cdd:PRK12704 41 KRILEEAKKE-AEAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKlEKRLLQKEENLDRKLEL---LEKREEELEKKE 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 12655864 726 EGLQSsawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 781
Cdd:PRK12704 117 KELEQ---KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
763-966 |
8.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 8.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 763 EKEELRKELlEKHQRELQEGREKMETECNRRTSqIEAQFQSDCQKVTERcESALQSLEGRY---RQELKDLQEQQREEKS 839
Cdd:COG4942 21 AAAEAEAEL-EQLQQEIAELEKELAALKKEEKA-LLKQLAALERRIAAL-ARRIRALEQELaalEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 840 QWEFEKDELTQECAEAQellkeTLKREKTTSLVLTQE-------REMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQ 912
Cdd:COG4942 98 ELEAQKEELAELLRALY-----RLGRQPPLALLLSPEdfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 12655864 913 QSMLSDQILELKSSHKR---ELREREEVLCQAGASEQLASQRLERLEMEHDQERQEM 966
Cdd:COG4942 173 RAELEALLAELEEERAAleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
735-1298 |
1.03e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 735 EEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEaqfqsDCQKVTERCES 814
Cdd:PRK03918 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE-----ELEEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 815 aLQSLEGRYRqELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtyKEHLNSMVVE 894
Cdd:PRK03918 288 -LKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR--LEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 895 RQQLLQDLEDLRNVSETQQSMLSDQIL-ELKSSHKRELREREEvlcqagaseqlasqrLERLEMEHDQERQEMMSKLLAM 973
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEkELEELEKAKEEIEEE---------------ISKITARIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 974 ENIHKA--TCETADRE---------RAEMSTEISRLQSKIKEMQQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEQL 1042
Cdd:PRK03918 429 EELKKAkgKCPVCGRElteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1043 LEE----NGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPglvmsscldepatefFGNTAEQTEPFLQQNRTKqv 1118
Cdd:PRK03918 509 EEKlkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------------LKKKLAELEKKLDELEEE-- 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1119 egvtrrhvLSDLEddevRDLGSTGTSSVQRQEAKIEESEASVEGFSELENSEEtrtESWELKNQISQLQEQLmmlcadcD 1198
Cdd:PRK03918 572 --------LAELL----KELEELGFESVEELEERLKELEPFYNEYLELKDAEK---ELEREEKELKKLEEEL-------D 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1199 RASEKKQDLLFDVSVLKKKLKMLERI--PEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEvfrlqde 1276
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE------- 702
|
570 580
....*....|....*....|..
gi 12655864 1277 LKKMEEVTETFLSLEKSYDEVK 1298
Cdd:PRK03918 703 LEEREKAKKELEKLEKALERVE 724
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
679-1007 |
1.03e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 679 RHEEEKKQLQ---VKLEEEKTHLQEKLRLQH----EM--ELkARLTQAQASFEREregLQSSAWTEEKVRGLTQELE--Q 747
Cdd:COG3096 275 RHANERRELSeraLELRRELFGARRQLAEEQyrlvEMarEL-EELSARESDLEQD---YQAASDHLNLVQTALRQQEkiE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 748 FHQEQLTSLVEKhTLEKEELRKELLEKHQrELQEGREKMETECNRRTSQIeaqfqSDCQKVTErcesALQSLEGRYRQEL 827
Cdd:COG3096 351 RYQEDLEELTER-LEEQEEVVEEAAEQLA-EAEARLEAAEEEVDSLKSQL-----ADYQQALD----VQQTRAIQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 828 kdlqeqQREEKSQWEFEKDELTQECAEA-QELLKEtlKREKTTSLVLTQEREM---------LEKTYkEHLNSMV--VER 895
Cdd:COG3096 420 ------QALEKARALCGLPDLTPENAEDyLAAFRA--KEQQATEEVLELEQKLsvadaarrqFEKAY-ELVCKIAgeVER 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 896 -------QQLLQDLEDLRNVSETQQSM---LSDqiLELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQE 965
Cdd:COG3096 491 sqawqtaRELLRRYRSQQALAQRLQQLraqLAE--LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEE 568
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 12655864 966 mmskllameniHKATCETADRERAEMSTEISRLQSKIKEMQQ 1007
Cdd:COG3096 569 -----------LEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
345-861 |
1.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 345 ALEYELLVTKNSTHQAALASFKAEIRHLLERVDQVVREKEKLR-----SDLDKAEKLKSLMASEVDDHHAAIERRNEYN- 418
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEaqirgNGGDRLEQLEREIERLERELEERERRRARLEa 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 419 -LRKLD-------EEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAlSLKENSRLENELLEN 490
Cdd:COG4913 367 lLAALGlplpasaEEFAALRAEAA-ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA-SLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 491 AENVLAEKFGdLDPSSAEFFLQeerLTQMRNEYER-----------QCRVL---QDQVDELQSELEEYRAQGRV--LRLP 554
Cdd:COG4913 445 LRDALAEALG-LDEAELPFVGE---LIEVRPEEERwrgaiervlggFALTLlvpPEHYAAALRWVNRLHLRGRLvyERVR 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 555 LKNSPSEEVEANSGGIepEHGLGSEEcNPLNMSIEAELvieqmkEQHHRDICClrlELEDKVRHYEKQLDET--VVSCKK 632
Cdd:COG4913 521 TGLPDPERPRLDPDSL--AGKLDFKP-HPFRAWLEAEL------GRRFDYVCV---DSPEELRRHPRAITRAgqVKGNGT 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 633 AQENMKQRHENETHTL----EKQISDLKNEIAELQGQAAVLKEAhheatcrhEEEKKQLQVKLEEEKTHLQeKLRLQHEM 708
Cdd:COG4913 589 RHEKDDRRRIRSRYVLgfdnRAKLAALEAELAELEEELAEAEER--------LEALEAELDALQERREALQ-RLAEYSWD 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 709 ELKARLTQAQ-ASFEREREGLQSSAWT----EEKVRGLTQELEQFHQEQLTSLVEKHTLEKEelRKELLEKHQRELQEGR 783
Cdd:COG4913 660 EIDVASAEREiAELEAELERLDASSDDlaalEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 784 EKMETECNRRTSQIEAQFQSDCQ-----KVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQEL 858
Cdd:COG4913 738 AAEDLARLELRALLEERFAAALGdaverELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEY 817
|
...
gi 12655864 859 LKE 861
Cdd:COG4913 818 LAL 820
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
736-937 |
1.10e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 736 EKVRGLTQELEQFHQE--QLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvTERCE 813
Cdd:COG4913 255 EPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL--------REELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 814 SALQSLEGRYRQELKDLQEQQReeksQWEFEKDELTQECAEAQELLketlkreKTTSLVLTQEREMLEKTYKEHlnsmvv 893
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIE----RLERELEERERRRARLEALL-------AALGLPLPASAEEFAALRAEA------ 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 12655864 894 erQQLLQDLEDLRNVSETQQSMLSDQILELKSSHKRELREREEV 937
Cdd:COG4913 390 --AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
638-966 |
1.17e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 638 KQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATcRHEEEK---KQLQVKLEEEKTHLQEklrLQHEM-ELKAR 713
Cdd:PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET-RETLSTlslRQLESRLAQTLDQLQN---AQNDLaEYNSQ 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 714 LTQAQASFEREReglqsSAWTEEKVRglTQELEQfhqeQLTSLvekhTLEKEELRKELLEKHQRELQEGREKMETecNRR 793
Cdd:PRK11281 151 LVSLQTQPERAQ-----AALYANSQR--LQQIRN----LLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDL--QRK 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 794 TSQIEAQFQSDCQKvtERCESALQSleGRYRQELKDLQE---QQREEKSQWEFEKDELTQECAEAQEllKETLKREKTTS 870
Cdd:PRK11281 214 SLEGNTQLQDLLQK--QRDYLTARI--QRLEHQLQLLQEainSKRLTLSEKTVQEAQSQDEAARIQA--NPLVAQELEIN 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 871 LVLTQerEMLEKTykEHLNSMVverQQLLQDLEDLRNVSETQQSmLSDQILELKSS--HKRELREREEVLCQAGASEQLA 948
Cdd:PRK11281 288 LQLSQ--RLLKAT--EKLNTLT---QQNLRVKNWLDRLTQSERN-IKEQISVLKGSllLSRILYQQQQALPSADLIEGLA 359
|
330 340
....*....|....*....|..
gi 12655864 949 SQ----RLERLEMehDQERQEM 966
Cdd:PRK11281 360 DRiadlRLEQFEI--NQQRDAL 379
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
836-1785 |
1.25e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 836 EEKSQWEF-EKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDledlRNVSETQQS 914
Cdd:TIGR00606 158 QEDSNWPLsEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRD----QITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 915 MLSDQILELKSSHKRELREREEVLCQAGAS-----EQLASQRLERLEMEHDQERQEMM---------SKLLAMENIHKAT 980
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNRLKEIEHNLSKimkldNEIKALKSRKKQMEKDNSELELKmekvfqgtdEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 981 CETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQNGCQVIGEEEVEGDGALSLLQQGEQL------LEENGDVLLSLQ 1054
Cdd:TIGR00606 314 VREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgFERGPFSERQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1055 RAHEQAVKENVKMATEISRLQQRLQKLEpglvmsscldepateffgNTAEQTEPFLQQNRTKQVEGVTRRHVLSDLEDDE 1134
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKE------------------RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1135 VRDLGSTGTSSVQRQEAKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQdlLFDVSVL 1214
Cdd:TIGR00606 456 LKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ--LNHHTTT 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1215 KKKLKMLERipEASPKYKLLYEDVSRENDCLQEELrmmetrydEALENNKELTAEVFRLQDELKKMEEvteTFLSLEKSY 1294
Cdd:TIGR00606 534 RTQMEMLTK--DKMDKDEQIRKIKSRHSDELTSLL--------GYFPNKKQLEDWLHSKSKEINQTRD---RLAKLNKEL 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1295 DEVKIENEELNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEP-----------------DGNILQLNQTLEECV 1357
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIeksskqramlagatavySQFITQLTDENQSCC 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1358 PRVRSVHHVIEECKQENQYLEGNTQLL-EKVKAHEiawlhgTIQTHQERPRVQNQVILEENTTLLGFQDKhfqhqatiaE 1436
Cdd:TIGR00606 681 PVCQRVFQTEAELQEFISDLQSKLRLApDKLKSTE------SELKKKEKRRDEMLGLAPGRQSIIDLKEK---------E 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1437 LELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKammHDLQITCSEMQQKVELLRYESEKLQQENSILrneittl 1516
Cdd:TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA---KVCLTDVTIMERFQMELKDVERKIAQQAAKL------- 815
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1517 neEDSISNLKLGTLYWNSGRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQR 1596
Cdd:TIGR00606 816 --QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1597 LTEMlcqkekEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQE---NHLLKDELEKMKQLH 1673
Cdd:TIGR00606 894 STEV------QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKvknIHGYMKDIENKIQDG 967
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1674 RCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNscvdklakssllehriaTMKQEQKSWEHQSASLKSQLV--ASQEKV 1751
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMR-----------------LMRQDIDTQKIQERWLQDNLTlrKRENEL 1030
|
970 980 990
....*....|....*....|....*....|....
gi 12655864 1752 QNLEDTVQNVNLQMSRMksdlRVTQQEKEALKQE 1785
Cdd:TIGR00606 1031 KEVEEELKQHLKEMGQM----QVLQMKQEHQKLE 1060
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
369-768 |
1.46e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 369 IRHLLERVDQVVREKEKLRSDLdkaEKLKSLMASEVDDHHAAIERRNEyNLRKLD------EEYKERIAALKNELRKER- 441
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEALL---KAMKSECQGQMERQMAAIQGKNE-SLEKVSsltaqlESTKEMLRKVVEELTAKKm 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 442 -----EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE--LLENAE---NVLAEKFGDLDPSSAEFFL 511
Cdd:pfam15921 490 tlessERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdHLRNVQtecEALKLQMAEKDKVIEILRQ 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 512 QEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRL--PLKNSPSEEVEANSGGIEPEH----GLGSEECNPL- 584
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKIlkDKKDAKIRELEARVSDLELEKvklvNAGSERLRAVk 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 585 NMSIEAELVIEQMKEQHH------RDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHE-------NETHT---- 647
Cdd:pfam15921 650 DIKQERDQLLNEVKTSRNelnslsEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNtlksmegSDGHAmkva 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 648 --LEKQISDLKNEIAELQGQAAVLKEAHHEATCRH---EEEKKQLQVKLE---EEKTHLQEKLRLQHEMELKARLTQAQA 719
Cdd:pfam15921 730 mgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKhflKEEKNKLSQELStvaTEKNKMAGELEVLRSQERRLKEKVANM 809
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 12655864 720 SFEREREGLQSSAwteekvrglTQELEQFHQEQLTSLVEKHTLEKEELR 768
Cdd:pfam15921 810 EVALDKASLQFAE---------CQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
612-837 |
1.64e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 612 LEDKVRHYEKQLDEtvvsckkAQENMK--QRHENETHTLEKQISDLKNEIAelqgQAAVLKEAHHEATCRHEEEKKQL-- 687
Cdd:COG3096 891 LADRLEELREELDA-------AQEAQAfiQQHGKALAQLEPLVAVLQSDPE----QFEQLQADYLQAKEQQRRLKQQIfa 959
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 688 ---------------QVKLEEEKTHLQEKLRlqhemelkARLTQAQASFEREREglqssawteeKVRGLTQELEQFHQEq 752
Cdd:COG3096 960 lsevvqrrphfsyedAVGLLGENSDLNEKLR--------ARLEQAEEARREARE----------QLRQAQAQYSQYNQV- 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 753 LTSLVEKHtlekeELRKELLEKHQRELQE----GREKMETECNRRTSQIEAQFQSDCQKVTE------RCESALQSLEGR 822
Cdd:COG3096 1021 LASLKSSR-----DAKQQTLQELEQELEElgvqADAEAEERARIRRDELHEELSQNRSRRSQlekqltRCEAEMDSLQKR 1095
|
250
....*....|....*
gi 12655864 823 YRQELKDLQeQQREE 837
Cdd:COG3096 1096 LRKAERDYK-QEREQ 1109
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
428-547 |
1.74e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 428 ERIAALK-NELRKEREQILQQAGKQRLELEQEIEKAKTEENYirdRLALSLKENSRLENELLENAENVLAEKFGDLDPSS 506
Cdd:PRK12704 26 KKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIH---KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 12655864 507 AEFFLQEERLTQMRNEYERQcrvlQDQVDELQSELEEYRAQ 547
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQK----QQELEKKEEELEELIEE 139
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
661-923 |
1.80e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 43.59 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 661 ELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEkTHLQEKLRLQHE-MELKArLTQAQASFEREREGLQSSAWTEEKVr 739
Cdd:pfam07111 54 ELEGSQALSQQAELISRQLQELRRLEEEVRLLRE-TSLQQKMRLEAQaMELDA-LAVAEKAGQAEAEGLRAALAGAEMV- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 740 gltqeleqfhqeqltslvekhtlekeelRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKvTERCESALQSL 819
Cdd:pfam07111 131 ----------------------------RKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSK-AEGLEKSLNSL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 820 EGRYRQELKDLQEQQREEksqwEFEKDEL--TQECAEAQELLKETLKR---EKTTSLVLTQEREMLEKTYKEHLNSMVVE 894
Cdd:pfam07111 182 ETKRAGEAKQLAEAQKEA----ELLRKQLskTQEELEAQVTLVESLRKyvgEQVPPEVHSQTWELERQELLDTMQHLQED 257
|
250 260
....*....|....*....|....*....
gi 12655864 895 RQQLLQDLEDLRNVSETQQSMLSDQILEL 923
Cdd:pfam07111 258 RADLQATVELLQVRVQSLTHMLALQEEEL 286
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
384-1007 |
2.32e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 384 EKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALKNELRKEReqilqqagKQRLELEQEIEKAK 463
Cdd:pfam01576 144 EDQNSKLSKERKLLEERISEFTSNLAEEEEKAK-SLSKLKNKHEAMISDLEERLKKEE--------KGRQELEKAKRKLE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 464 TEENYIRDRLALSLKENSRLENELLENAENVLAekfgdldpssAEFFLQEErlTQMRNEYERQCRVLQDQVDELQSELEE 543
Cdd:pfam01576 215 GESTDLQEQIAELQAQIAELRAQLAKKEEELQA----------ALARLEEE--TAQKNNALKKIRELEAQISELQEDLES 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 544 YRAQgRVLRLPLKNSPSEEVEANSGGIEPehglgseecnplnmSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQL 623
Cdd:pfam01576 283 ERAA-RNKAEKQRRDLGEELEALKTELED--------------TLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 624 DETVVSCKKAQENMKQRHENETH---TLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ------VKLEEE 694
Cdd:pfam01576 348 QEMRQKHTQALEELTEQLEQAKRnkaNLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQelqarlSESERQ 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 695 KTHLQEKL-RLQHEME-LKARLTQAQASFEREREGLQSSAWTEEKVRGLTQE-----------LEQFHQEQlTSLVEKht 761
Cdd:pfam01576 428 RAELAEKLsKLQSELEsVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEetrqklnlstrLRQLEDER-NSLQEQ-- 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 762 LEKEELRKELLEKH----QRELQEGREKMETECNRRTSQIEAQ--FQSDCQKVTERCESALQSLE------GRYRQELKD 829
Cdd:pfam01576 505 LEEEEEAKRNVERQlstlQAQLSDMKKKLEEDAGTLEALEEGKkrLQRELEALTQQLEEKAAAYDklektkNRLQQELDD 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 830 L---QEQQRE-----EKSQWEFEK---DELTQECAEAQELLK-ETLKREKTTSLV--------LTQEREMLEKT------ 883
Cdd:pfam01576 585 LlvdLDHQRQlvsnlEKKQKKFDQmlaEEKAISARYAEERDRaEAEAREKETRALslaraleeALEAKEELERTnkqlra 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 884 ---------------------YKEHLNSMVVERQQLLQDLEDLRNVSETQQSMLSDQILELKSSHKRELREREEvlcQAG 942
Cdd:pfam01576 665 emedlvsskddvgknvhelerSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDE---QGE 741
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12655864 943 ASEQLASQRLERLEMEHDQERQEMMSKLLAMENIH------KATCETADRERAEMSTEISRLQSKIKEMQQ 1007
Cdd:pfam01576 742 EKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLEldlkelEAQIDAANKGREEAVKQLKKLQAQMKDLQR 812
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
686-974 |
2.33e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 43.01 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 686 QLQVKLEEEKTHLQEK-----LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 760
Cdd:pfam15818 236 ELNKKINEEITHIQEEkqdiiISFQHMQQLLQQQTQANTEMEAELKALKENNQTLERDNELQREKVKENEEKFLNLQNEH 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 761 -----TLEK--EELRKEL---------LEKHQRELQEGREKMeteCNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYR 824
Cdd:pfam15818 316 ekalgTWKKhvEELNGEIneiknelssLKETHIKLQEHYNKL---CNQKKFEEDKKFQNVPEVNNENSEMSTEKSENLII 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 825 QelKDLQEQQREEKSQWEFEKDeltqecaeaQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVveRQQLLQDLED 904
Cdd:pfam15818 393 Q--KYNSEQEIREENTKSFCSD---------TEYRETEKKKGPPVEEIIIEDLQVLEKSFKNEIDTSV--PQDKNQSEIS 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12655864 905 LRNVSETQQSMLS-DQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAME 974
Cdd:pfam15818 460 LSKTLCTDKDLISqGQTLNVTDFRKSVTTEIKDKLCLEKDNGCSEFKSPNNLFLVADQSIETEKIHLESTE 530
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1719-1944 |
2.69e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1719 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGG 1798
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1799 --KSWAPEIATHPSGLHNQQKRL-SWDKLDHLMNEEQQLLWQENERSQTMVQEHQSRLTHSREKVRQLESNLLPKHQKHL 1875
Cdd:TIGR02168 317 qlEELEAQLEELESKLDELAEELaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12655864 1876 NPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSqmnslEQELETIHLENEGLKKKQVKLDEQLMEMQ 1944
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLE-----EAELKELQAELEELEEELEELQEELERLE 460
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1719-1920 |
3.17e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1719 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--- 1795
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1796 ---AGGKSWAPEIATHPSGLHNQQKRLSWdkLDHLMNEEQQLLwQENERSQTMVQEHQSRLTHSREKVRQLESNLLPKHQ 1872
Cdd:COG4942 112 alyRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 12655864 1873 KhlnpsgtmnpTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELE 1920
Cdd:COG4942 189 A----------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1562-1911 |
4.43e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1562 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQE-----KFNLKEELERCKVQSST 1636
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1637 LVSSLEAELSEVKIQTHIVQQENHLLKDELEKMkqlhrcpdlsdfqqkissvlsyNEKLLKEKEALSEELNSCVDKL-AK 1715
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL----------------------NKKIKDLGEEEQLRVKEKIGELeAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1716 SSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1795
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1796 AGGKswapeiathpsgLHNQQKRLswDKLDHLMNE---EQQLLWQENERSQTMVQEHQSRLTHSREKVRQLESNLLPK-- 1870
Cdd:TIGR02169 383 TRDE------------LKDYREKL--EKLKREINElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKal 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 12655864 1871 -----HQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQ 1911
Cdd:TIGR02169 449 eikkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
612-785 |
4.61e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 41.91 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 612 LEDKVRHYEKQLDETVVSCKKAQENMKQRHEnethtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKL 691
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQ------LKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 692 EEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKVRGLTQELEQFHQEQltslvEKHTLEKEELRKEL 771
Cdd:pfam05262 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESKASEKEA-----EDKELEAQKKREPV 333
|
170
....*....|....
gi 12655864 772 LEKHQRELQEGREK 785
Cdd:pfam05262 334 AEDLQKTKPQVEAQ 347
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
512-998 |
4.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 512 QEERLTQMRNEyERQCRVLQDQVDELQSELEEYRAQGRVLRlplknspseeveansggiepehglgsEECNPLNMSIEAE 591
Cdd:COG4717 76 LEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELR--------------------------EELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 592 LVIEQMKE-QHHRDICCLRLE-LEDKVRHY---EKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQA 666
Cdd:COG4717 129 PLYQELEAlEAELAELPERLEeLEERLEELrelEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 667 AVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRLQhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELe 746
Cdd:COG4717 209 AELEEELEEAQEELEELEEELE-QLENELEAAALEERLK-EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 747 qfhqeqLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQE 826
Cdd:COG4717 286 ------LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 827 LKDLQEQQREEKSQWEFEKDELTQEcAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLr 906
Cdd:COG4717 360 EEELQLEELEQEIAALLAEAGVEDE-EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL- 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 907 nvsETQQSMLSDQILELKSShKRELREREEVLCQAGASEQLAsQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADR 986
Cdd:COG4717 438 ---EEELEELEEELEELREE-LAELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
490
....*....|..
gi 12655864 987 ERAEMSTEISRL 998
Cdd:COG4717 513 RLPPVLERASEY 524
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
419-544 |
5.01e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 419 LRKLDEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENyirdrlalslKENSRLENELLENAENvLAEK 498
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR----------NELQKLEKRLLQKEEN-LDRK 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 12655864 499 FGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEY 544
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
359-489 |
5.37e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 359 QAALASFKA---------EIRHLLERVDQVVREKEKLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN- 418
Cdd:COG3206 195 EAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAe 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 419 ----LRKLDEEYKE---RIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAL---SLKENSRLENELL 488
Cdd:COG3206 275 leaeLAELSARYTPnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQleaRLAELPELEAELR 354
|
.
gi 12655864 489 E 489
Cdd:COG3206 355 R 355
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
750-880 |
5.65e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 750 QEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvtercESALQSLEGRYRQELKD 829
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL------------EKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 12655864 830 LQEQQRE---EKSQWEFEKDELTQECAEAQELLKETLKR-EKTTSLVLTQEREML 880
Cdd:PRK12704 105 LEKREEElekKEKELEQKQQELEKKEEELEELIEEQLQElERISGLTAEEAKEIL 159
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
367-467 |
6.57e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 367 AEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmASEVDDHHAAIERRneynLRKLDEEYKERIAALkNELRKEREQILQ 446
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEE----LEALKARWEAEKELI-EEIQELKEELEQ 482
|
90 100
....*....|....*....|.
gi 12655864 447 QAGKqRLELEQEIEKAKTEEN 467
Cdd:COG0542 483 RYGK-IPELEKELAELEEELA 502
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
681-856 |
7.28e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 41.09 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 681 EEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREG----LQSSAWTEEKVRGLTQELEQFHQEQLTSl 756
Cdd:pfam15709 340 AERAEMRRLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFeeirLRKQRLEEERQRQEEEERKQRLQLQAAQ- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 757 vEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQIEAQFQSDCQKVTERCESALQSLEgRYRQELKDLQEQQRE 836
Cdd:pfam15709 419 -ERARQQQEEFRRKLQELQRKKQQEEAERAEAE-KQRQKELEMQLAEEQKRLMEMAEEERLEYQ-RQKQEAEEKARLEAE 495
|
170 180
....*....|....*....|
gi 12655864 837 EKSQWEFEKDELTQECAEAQ 856
Cdd:pfam15709 496 ERRQKEEEAARLALEEAMKQ 515
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1539-1793 |
8.90e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 8.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1539 QKTETVKQENAAVQKMVENLKKQISELKiknqQLDLENTELSQknSQNQEKLQElnqrltemlcQKEKEPGNSALEEREQ 1618
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKLKEQILKAK----ESSSKPSELAL--NEMIEKLKK----------EIDLEYTEAVIAMGLQ 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1619 EKF-NLKEELERCKVQSSTLVSSLEAELSEVK--IQTHIVQQENHL-LKDELEKMKQLHRCPDLSDFQQKissvlsynek 1694
Cdd:PLN03229 486 ERLeNLREEFSKANSQDQLMHPVLMEKIEKLKdeFNKRLSRAPNYLsLKYKLDMLNEFSRAKALSEKKSK---------- 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1695 llkeKEALSEELNSCVDKLAKSSLLEHRIATMKQE-QKSWEHQSASLKSQLVASQEKVQN-----LEDTVQNVNLQMSRM 1768
Cdd:PLN03229 556 ----AEKLKAEINKKFKEVMDRPEIKEKMEALKAEvASSGASSGDELDDDLKEKVEKMKKeieleLAGVLKSMGLEVIGV 631
|
250 260
....*....|....*....|....*..
gi 12655864 1769 KSDLRVTQQEK--EALKQEVMSLHKQL 1793
Cdd:PLN03229 632 TKKNKDTAEQTppPNLQEKIESLNEEI 658
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-1004 |
9.22e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 631 KKAQENMKQRHENETHTLEKQISDlKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHlQEKLRLQHEMEL 710
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAE 1367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 711 KARLTQAQAsfEREREGLQSSAWTEEKVRGLTQELEQFHQEqlTSLVEKHTLEK---EELRKELLEKhqRELQEGREKME 787
Cdd:PTZ00121 1368 AAEKKKEEA--KKKADAAKKKAEEKKKADEAKKKAEEDKKK--ADELKKAAAAKkkaDEAKKKAEEK--KKADEAKKKAE 1441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 788 TECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDEL--TQECAEAQELLKETLKR 865
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEA 1521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 866 EKTTSLVLTQEREMLEKTYK--EHLNSMVVERQQLLQDLEDLRNV-----SETQQSMLSDQILELKSSHKRELREREEVL 938
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKaeEKKKADELKKAEELKKAEEKKKAeeakkAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12655864 939 CQAGA--SEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADR-ERAEMSTEISRLQSKIKE 1004
Cdd:PTZ00121 1602 EEEKKmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKA 1670
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
635-842 |
9.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 635 ENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRLQHEmELKARL 714
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID-KLQAEIAEAEAEIEERRE-ELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 715 TQAQasfereREGLQSSAWTE-----------EKVRGLTQELEQfHQEQLTSLveKHTLEKEELRKELLEKHQRELQEGR 783
Cdd:COG3883 93 RALY------RSGGSVSYLDVllgsesfsdflDRLSALSKIADA-DADLLEEL--KADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 12655864 784 EKMETECNRRTSQIEAQfqsdcqkvtercESALQSLEGRYRQELKDLQEQQREEKSQWE 842
Cdd:COG3883 164 AELEAAKAELEAQQAEQ------------EALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1438-1629 |
9.30e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1438 ELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN 1517
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12655864 1518 EEDsisnlklgtlywnsgRMRQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQrl 1597
Cdd:PTZ00121 1696 KEA---------------EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-- 1758
|
170 180 190
....*....|....*....|....*....|..
gi 12655864 1598 temLCQKEKEPGNSALEEREQEKFNLKEELER 1629
Cdd:PTZ00121 1759 ---IAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| |
