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Conserved domains on  [gi|152012745|gb|AAI50438|]
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Hirip5 protein [Danio rerio]

Protein Classification

NifU family protein( domain architecture ID 10658660)

NifU family protein may have a role in the biogenesis of Fe/S proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nfu_N smart00932
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 53-144 8.14e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


:

Pssm-ID: 214919  Cd Length: 88  Bit Score: 78.34  E-value: 8.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152012745    53 IQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAprADTAPsedddevvaMIKELLDTrirPTVQE----------DGSG 122
Cdd:smart00932   1 IQTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEA--AEASP---------LAQKLFEI---PGVKSvffgpdfitvTKYP 66

                           90       100
                   ....*....|....*....|..
gi 152012745   123 ETEWKVIKPDVFATIMDFFTSG 144
Cdd:smart00932  67 DVDWEDLKPEVLSVIMEHFESG 88
 
Name Accession Description Interval E-value
Nfu_N smart00932
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 53-144 8.14e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 214919  Cd Length: 88  Bit Score: 78.34  E-value: 8.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152012745    53 IQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAprADTAPsedddevvaMIKELLDTrirPTVQE----------DGSG 122
Cdd:smart00932   1 IQTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEA--AEASP---------LAQKLFEI---PGVKSvffgpdfitvTKYP 66

                           90       100
                   ....*....|....*....|..
gi 152012745   123 ETEWKVIKPDVFATIMDFFTSG 144
Cdd:smart00932  67 DVDWEDLKPEVLSVIMEHFESG 88
Nfu_N pfam08712
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 53-137 4.36e-13

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 462574  Cd Length: 81  Bit Score: 60.95  E-value: 4.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152012745   53 IQTQDTPNPNSLKFLPGRAVL-DSGTMDFagprdapradtaPSEDDDEVVAMIKELLdtrirptvQEDG----------- 120
Cdd:pfam08712   1 IQTEPTPNPNALKFIPGKPLLpEGGTAEF------------KSAEEAKASPLAQKLF--------AIPGvksvfigpdfi 60

                          90       100
                  ....*....|....*....|.
gi 152012745  121 ----SGETEWKVIKPDVFATI 137
Cdd:pfam08712  61 tvtkDDDVDWEDLKPEVRSVI 81
 
Name Accession Description Interval E-value
Nfu_N smart00932
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 53-144 8.14e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 214919  Cd Length: 88  Bit Score: 78.34  E-value: 8.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152012745    53 IQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAprADTAPsedddevvaMIKELLDTrirPTVQE----------DGSG 122
Cdd:smart00932   1 IQTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEA--AEASP---------LAQKLFEI---PGVKSvffgpdfitvTKYP 66

                           90       100
                   ....*....|....*....|..
gi 152012745   123 ETEWKVIKPDVFATIMDFFTSG 144
Cdd:smart00932  67 DVDWEDLKPEVLSVIMEHFESG 88
Nfu_N pfam08712
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 53-137 4.36e-13

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 462574  Cd Length: 81  Bit Score: 60.95  E-value: 4.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152012745   53 IQTQDTPNPNSLKFLPGRAVL-DSGTMDFagprdapradtaPSEDDDEVVAMIKELLdtrirptvQEDG----------- 120
Cdd:pfam08712   1 IQTEPTPNPNALKFIPGKPLLpEGGTAEF------------KSAEEAKASPLAQKLF--------AIPGvksvfigpdfi 60

                          90       100
                  ....*....|....*....|.
gi 152012745  121 ----SGETEWKVIKPDVFATI 137
Cdd:pfam08712  61 tvtkDDDVDWEDLKPEVRSVI 81
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
 104-133 1.53e-03

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 35.11  E-value: 1.53e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 152012745  104 IKELLDTRIRPTVQEDGsGETEWKVIKPDV 133
Cdd:pfam01106   1 IEEVLEEEIRPALQADG-GDIELVDVDDGV 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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