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Conserved domains on  [gi|223461847|gb|AAI46899|]
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Progressive rod-cone degeneration [Homo sapiens]

Protein Classification

Rod_cone_degen domain-containing protein( domain architecture ID 10633566)

Rod_cone_degen domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rod_cone_degen pfam15201
Progressive rod-cone degeneration; This family of proteins is involved in vision.
 1-54 8.37e-33

Progressive rod-cone degeneration; This family of proteins is involved in vision.


:

Pssm-ID: 291855  Cd Length: 54  Bit Score: 106.25  E-value: 8.37e-33
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 223461847   1 MCTTLFLLSTLAMLWRRRFANRVQPEPSDVDGAARGSSLDADPQSSGREKEPLK 54
Cdd:pfam15201  1 MCTTLFLLSTLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSGREKEPLK 54
 
Name Accession Description Interval E-value
Rod_cone_degen pfam15201
Progressive rod-cone degeneration; This family of proteins is involved in vision.
 1-54 8.37e-33

Progressive rod-cone degeneration; This family of proteins is involved in vision.


Pssm-ID: 291855  Cd Length: 54  Bit Score: 106.25  E-value: 8.37e-33
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 223461847   1 MCTTLFLLSTLAMLWRRRFANRVQPEPSDVDGAARGSSLDADPQSSGREKEPLK 54
Cdd:pfam15201  1 MCTTLFLLSTLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSGREKEPLK 54
 
Name Accession Description Interval E-value
Rod_cone_degen pfam15201
Progressive rod-cone degeneration; This family of proteins is involved in vision.
 1-54 8.37e-33

Progressive rod-cone degeneration; This family of proteins is involved in vision.


Pssm-ID: 291855  Cd Length: 54  Bit Score: 106.25  E-value: 8.37e-33
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 223461847   1 MCTTLFLLSTLAMLWRRRFANRVQPEPSDVDGAARGSSLDADPQSSGREKEPLK 54
Cdd:pfam15201  1 MCTTLFLLSTLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSGREKEPLK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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