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Conserved domains on  [gi|120537356|gb|AAI29036|]
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Zgc:66331 [Danio rerio]

Protein Classification

sister chromatid cohesion protein PDS5( domain architecture ID 20799355)

sister chromatid cohesion protein PDS5 is essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase; also required for chromosomal condensation.

Gene Ontology:  GO:0007064|GO:0008156|GO:0051301

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
34-1104 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


:

Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1056.81  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356    34 DEVVKRLKLVVKTYMDMDQDSEEEKQqYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKEIFL 113
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   114 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEG 193
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   194 DGVTQELLDTILINLIPAHKNLNKQAYDLARTLLKRTVQTIETCIASFFNQVLVMGKSSVSDLSEHVFDLIQELFAIDPL 273
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   274 LLVSVMPQLEFKLKSNDGEERLAVVKLLAKLFGAKD-SELATQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHPDL 352
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   353 AKDLTEFLKVRSHDPEEAIRHDVIVTIINAGKKDLNLVNDQ-LLGFVRERMLDKRWRVRKEAMMGLAQLFKKYCLHHEAG 431
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   432 KESAL-KISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLETEEKMKCLYYLYACLDTNAVKALNEMWKCQNMLRGL 510
Cdd:pfam20168  399 DEEAIeKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   511 VRELLDLHKL------PTSEANTSAMFGKLMTIAKNLPDPGKAQDFMKKFNQVlgEDEKLRLQLEQLISPTCSCKQAEQC 584
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   585 VREITRKLtfpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLLNKSIEGTADDEDEGVtpdtairaglELLKVLSFT 664
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   665 HPTAFHSAEtyESLLQCLKMEDDKVAEAAIQIFRNTGQKIETELPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFH- 743
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   744 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSIVANFIVKDLLMNDRSVGN--KNGRLWTADD 821
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   822 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLPSAMLVSEGDLTEQKKISKSDMSRLRLAAGSAILKLAQEPC 899
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   900 YHDIITPEQFQLCGLVINDECYQVRQIYAQKLHVALVKLLLPLEYMAVFALCAKDPVKERRAHARQCLLKNISVRREyik 979
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   980 qnpmahEKLLSLLPEYVVPYMIHLLAHDPDLTKPQDLEQLRDVKECLWFMLEVLMTkNENNshSFLRKMVENIKQTKDAQ 1059
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENI--SLLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 120537356  1060 CPDdpkANEKLYIVCDVALFVIANKSTSCH---LDSPKDPVLPSKFYT 1104
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
34-1104 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1056.81  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356    34 DEVVKRLKLVVKTYMDMDQDSEEEKQqYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKEIFL 113
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   114 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEG 193
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   194 DGVTQELLDTILINLIPAHKNLNKQAYDLARTLLKRTVQTIETCIASFFNQVLVMGKSSVSDLSEHVFDLIQELFAIDPL 273
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   274 LLVSVMPQLEFKLKSNDGEERLAVVKLLAKLFGAKD-SELATQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHPDL 352
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   353 AKDLTEFLKVRSHDPEEAIRHDVIVTIINAGKKDLNLVNDQ-LLGFVRERMLDKRWRVRKEAMMGLAQLFKKYCLHHEAG 431
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   432 KESAL-KISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLETEEKMKCLYYLYACLDTNAVKALNEMWKCQNMLRGL 510
Cdd:pfam20168  399 DEEAIeKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   511 VRELLDLHKL------PTSEANTSAMFGKLMTIAKNLPDPGKAQDFMKKFNQVlgEDEKLRLQLEQLISPTCSCKQAEQC 584
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   585 VREITRKLtfpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLLNKSIEGTADDEDEGVtpdtairaglELLKVLSFT 664
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   665 HPTAFHSAEtyESLLQCLKMEDDKVAEAAIQIFRNTGQKIETELPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFH- 743
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   744 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSIVANFIVKDLLMNDRSVGN--KNGRLWTADD 821
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   822 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLPSAMLVSEGDLTEQKKISKSDMSRLRLAAGSAILKLAQEPC 899
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   900 YHDIITPEQFQLCGLVINDECYQVRQIYAQKLHVALVKLLLPLEYMAVFALCAKDPVKERRAHARQCLLKNISVRREyik 979
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   980 qnpmahEKLLSLLPEYVVPYMIHLLAHDPDLTKPQDLEQLRDVKECLWFMLEVLMTkNENNshSFLRKMVENIKQTKDAQ 1059
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENI--SLLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 120537356  1060 CPDdpkANEKLYIVCDVALFVIANKSTSCH---LDSPKDPVLPSKFYT 1104
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
37-666 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 677.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   37 VKRLKLVVKTYMDMDQDsEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKEIFLFIT 116
Cdd:cd19953     2 LKRLKALHEELSELDQD-EVDLESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLFI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  117 RQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 196
Cdd:cd19953    80 SQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESESV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  197 TQELLDTILINLIPAHKNLNKQAYDLARTLLKRTVQTIETCIASFFNQVLVMGK-----SSVSDLSEHVFDLIQELFAID 271
Cdd:cd19953   160 PQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASteedsEEDSEELEKAHELIYELWRIA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  272 PLLLVSVMPQLEFKLKSNDGEERLAVVKLLAKLFGAKDSE-LATQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHP 350
Cdd:cd19953   240 PELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNHP 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  351 DLAKDLTEFLKVRSHDPEEAIRHDVIVTIINAGKKDL-NLVNDQLLGFVRERMLDKRWRVRKEAMMGLAQLFKKYCLHHE 429
Cdd:cd19953   320 DLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLlHKVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEIE 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  430 AGKESALK-ISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLETEEKMKCLYYLYACLDTNAVKALNEMWKCQNMLR 508
Cdd:cd19953   400 EGDETAIKqFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRLR 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  509 GLVRELLDLHKLP------TSEANTSAMFGKLMTIAKNLPDPGKAQDFMKKFNQVlgEDEKLRLQLEQLISPTCSCKQAE 582
Cdd:cd19953   480 KELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTVR 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  583 QCVREITRKLTFPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLLNKSiegtaddedEGVTPDTAIRAGLELLKVLS 662
Cdd:cd19953   558 KARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEIS 626

                  ....
gi 120537356  663 FTHP 666
Cdd:cd19953   627 KVFP 630
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
34-1104 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1056.81  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356    34 DEVVKRLKLVVKTYMDMDQDSEEEKQqYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKEIFL 113
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   114 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEG 193
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   194 DGVTQELLDTILINLIPAHKNLNKQAYDLARTLLKRTVQTIETCIASFFNQVLVMGKSSVSDLSEHVFDLIQELFAIDPL 273
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   274 LLVSVMPQLEFKLKSNDGEERLAVVKLLAKLFGAKD-SELATQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHPDL 352
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   353 AKDLTEFLKVRSHDPEEAIRHDVIVTIINAGKKDLNLVNDQ-LLGFVRERMLDKRWRVRKEAMMGLAQLFKKYCLHHEAG 431
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   432 KESAL-KISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLETEEKMKCLYYLYACLDTNAVKALNEMWKCQNMLRGL 510
Cdd:pfam20168  399 DEEAIeKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   511 VRELLDLHKL------PTSEANTSAMFGKLMTIAKNLPDPGKAQDFMKKFNQVlgEDEKLRLQLEQLISPTCSCKQAEQC 584
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   585 VREITRKLtfpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLLNKSIEGTADDEDEGVtpdtairaglELLKVLSFT 664
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   665 HPTAFHSAEtyESLLQCLKMEDDKVAEAAIQIFRNTGQKIETELPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFH- 743
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   744 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSIVANFIVKDLLMNDRSVGN--KNGRLWTADD 821
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   822 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLPSAMLVSEGDLTEQKKISKSDMSRLRLAAGSAILKLAQEPC 899
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   900 YHDIITPEQFQLCGLVINDECYQVRQIYAQKLHVALVKLLLPLEYMAVFALCAKDPVKERRAHARQCLLKNISVRREyik 979
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   980 qnpmahEKLLSLLPEYVVPYMIHLLAHDPDLTKPQDLEQLRDVKECLWFMLEVLMTkNENNshSFLRKMVENIKQTKDAQ 1059
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENI--SLLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 120537356  1060 CPDdpkANEKLYIVCDVALFVIANKSTSCH---LDSPKDPVLPSKFYT 1104
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
37-666 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 677.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356   37 VKRLKLVVKTYMDMDQDsEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKEIFLFIT 116
Cdd:cd19953     2 LKRLKALHEELSELDQD-EVDLESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLFI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  117 RQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 196
Cdd:cd19953    80 SQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESESV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  197 TQELLDTILINLIPAHKNLNKQAYDLARTLLKRTVQTIETCIASFFNQVLVMGK-----SSVSDLSEHVFDLIQELFAID 271
Cdd:cd19953   160 PQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASteedsEEDSEELEKAHELIYELWRIA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  272 PLLLVSVMPQLEFKLKSNDGEERLAVVKLLAKLFGAKDSE-LATQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHP 350
Cdd:cd19953   240 PELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNHP 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  351 DLAKDLTEFLKVRSHDPEEAIRHDVIVTIINAGKKDL-NLVNDQLLGFVRERMLDKRWRVRKEAMMGLAQLFKKYCLHHE 429
Cdd:cd19953   320 DLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLlHKVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEIE 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  430 AGKESALK-ISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLETEEKMKCLYYLYACLDTNAVKALNEMWKCQNMLR 508
Cdd:cd19953   400 EGDETAIKqFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRLR 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  509 GLVRELLDLHKLP------TSEANTSAMFGKLMTIAKNLPDPGKAQDFMKKFNQVlgEDEKLRLQLEQLISPTCSCKQAE 582
Cdd:cd19953   480 KELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTVR 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120537356  583 QCVREITRKLTFPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLLNKSiegtaddedEGVTPDTAIRAGLELLKVLS 662
Cdd:cd19953   558 KARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEIS 626

                  ....
gi 120537356  663 FTHP 666
Cdd:cd19953   627 KVFP 630
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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