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Conserved domains on  [gi|116138363|gb|AAI25556|]
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RIKEN cDNA 2310010M20 gene [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4547 super family cl20950
Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins ...
 1-143 2.46e-98

Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins in this family are typically between 144 and 206 amino acids in length. The human member of this family is C3orf43.


The actual alignment was detected with superfamily member pfam15080:

Pssm-ID: 373539  Cd Length: 196  Bit Score: 280.74  E-value: 2.46e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116138363    1 MELNIVYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKG 80
Cdd:pfam15080  53 MELNILYSYVIEVLICLHTRVLEKLPDLVRSLPTLASVLRRKVKNKRIRVVWESILEEYGLQEGDITALCTFFVAHGNKA 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116138363   81 EHYAANVRRMYIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVK 143
Cdd:pfam15080 133 EHYTAKVRQMYIRDVSFMITNMVKNQALQDGLLRAVQVIEKGKAARTPETSKSPLKELIPSVK 195
 
Name Accession Description Interval E-value
DUF4547 pfam15080
Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins ...
 1-143 2.46e-98

Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins in this family are typically between 144 and 206 amino acids in length. The human member of this family is C3orf43.


Pssm-ID: 373539  Cd Length: 196  Bit Score: 280.74  E-value: 2.46e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116138363    1 MELNIVYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKG 80
Cdd:pfam15080  53 MELNILYSYVIEVLICLHTRVLEKLPDLVRSLPTLASVLRRKVKNKRIRVVWESILEEYGLQEGDITALCTFFVAHGNKA 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116138363   81 EHYAANVRRMYIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVK 143
Cdd:pfam15080 133 EHYTAKVRQMYIRDVSFMITNMVKNQALQDGLLRAVQVIEKGKAARTPETSKSPLKELIPSVK 195
 
Name Accession Description Interval E-value
DUF4547 pfam15080
Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins ...
 1-143 2.46e-98

Domain of unknown function (DUF4547); This family of proteins is found in eukaryotes. Proteins in this family are typically between 144 and 206 amino acids in length. The human member of this family is C3orf43.


Pssm-ID: 373539  Cd Length: 196  Bit Score: 280.74  E-value: 2.46e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116138363    1 MELNIVYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKG 80
Cdd:pfam15080  53 MELNILYSYVIEVLICLHTRVLEKLPDLVRSLPTLASVLRRKVKNKRIRVVWESILEEYGLQEGDITALCTFFVAHGNKA 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116138363   81 EHYAANVRRMYIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVK 143
Cdd:pfam15080 133 EHYTAKVRQMYIRDVSFMITNMVKNQALQDGLLRAVQVIEKGKAARTPETSKSPLKELIPSVK 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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