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Conserved domains on  [gi|79158654|gb|AAI08047|]
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Zgc:123017 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Dzip-like_N pfam13815
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ...
30-150 3.16e-46

Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.


:

Pssm-ID: 433498 [Multi-domain]  Cd Length: 118  Bit Score: 160.18  E-value: 3.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    30 FRFRSRTEPIDWRRLSTLDVDRVARDMDVSVLQDFIMTVTFCALEGERCPNcrgPVDPSLVKLLRMSQLSTEYLLQCQDF 109
Cdd:pfam13815   1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEAPH---FVDPHFLKLFRLAQLTIEYLLHSQEC 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 79158654   110 LSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENR 150
Cdd:pfam13815  78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
108-409 2.43e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 2.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 108 DFLSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQE-NRRRKQLIATQQLLLQASAnnyhkcqfceksfvnysyl 186
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLElEELELELEEAQAEEYELLA------------------- 295
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 187 qahvqrrhpEVTDAEKQKKRKVEEMEDGIEELKE-KLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKEDE 265
Cdd:COG1196 296 ---------ELARLEQDIARLEERRRELEERLEElEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 266 RRKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQdsdpEKEMRENRERELRERIARKKSEWRR 345
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE----RLEEELEELEEALAELEEEEEEEEE 442
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79158654 346 KFQEAQKRHQQENKELKSENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEK 409
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
PTZ00108 super family cl36510
DNA topoisomerase 2-like protein; Provisional
366-749 1.72e-03

DNA topoisomerase 2-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00108:

Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 41.96  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   366 SRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRliKSQEEKIKKLSATPVP--VSVVSLNDQDSSEEPVEQDRDSQE 443
Cdd:PTZ00108  998 EYLLGKLERELARLSNKVRFIKHVINGELVITNAKK--KDLVKELKKLGYVRFKdiIKKKSEKITAEEEEGAEEDDEADD 1075
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   444 DSDEPQWKAPK-----IRKGKPALMRESKPILEESLEQKlenmglRKGTKGISKQTFKSLSSllagQRLQKFRQQTNLQS 518
Cdd:PTZ00108 1076 EDDEEELGAAVsydylLSMPIWSLTKEKVEKLNAELEKK------EKELEKLKNTTPKDMWL----EDLDKFEEALEEQE 1145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   519 LRDSLTLEVTRRVKSLQKSSGKPTPntlKQRGKKTSTPLNEKSLRFRQDSKASDRREKSQQPKTLLPTPTPRSKAPPPNQ 598
Cdd:PTZ00108 1146 EVEEKEIAKEQRLKSKTKGKASKLR---KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   599 TPKILAKKNSTPPFSSDEESVEDTAYITSSRGNLSSSVRVVQSGSLLNPTTEPdwtdSELSEDLDLPKIYKTCNPQGSVV 678
Cdd:PTZ00108 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAP----KRVSAVQYSPPPPSKRPDGESNG 1298
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79158654   679 QTLTRSLERQlstPIKTPVGGTRVLPPSSTTPRPAIVKQQALSGEESDSELSSIEELTGRRAGGHKSLEVD 749
Cdd:PTZ00108 1299 GSKPSSPTKK---KVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
 
Name Accession Description Interval E-value
Dzip-like_N pfam13815
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ...
30-150 3.16e-46

Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.


Pssm-ID: 433498 [Multi-domain]  Cd Length: 118  Bit Score: 160.18  E-value: 3.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    30 FRFRSRTEPIDWRRLSTLDVDRVARDMDVSVLQDFIMTVTFCALEGERCPNcrgPVDPSLVKLLRMSQLSTEYLLQCQDF 109
Cdd:pfam13815   1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEAPH---FVDPHFLKLFRLAQLTIEYLLHSQEC 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 79158654   110 LSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENR 150
Cdd:pfam13815  78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
108-409 2.43e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 2.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 108 DFLSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQE-NRRRKQLIATQQLLLQASAnnyhkcqfceksfvnysyl 186
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLElEELELELEEAQAEEYELLA------------------- 295
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 187 qahvqrrhpEVTDAEKQKKRKVEEMEDGIEELKE-KLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKEDE 265
Cdd:COG1196 296 ---------ELARLEQDIARLEERRRELEERLEElEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 266 RRKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQdsdpEKEMRENRERELRERIARKKSEWRR 345
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE----RLEEELEELEEALAELEEEEEEEEE 442
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79158654 346 KFQEAQKRHQQENKELKSENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEK 409
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
PTZ00121 PTZ00121
MAEBL; Provisional
132-481 1.11e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   132 EGQRAELEKSLQETKQENRRRKQLIATQQLLLQAS----ANNYHKCQFCEKsfvnysylqAHVQRRHPEVTDAEKQKK-- 205
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEearkADELKKAEEKKK---------ADEAKKAEEKKKADEAKKka 1311
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   206 ---RKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEK--EALERWKEDERRKfnQEIADLRQLF 280
Cdd:PTZ00121 1312 eeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEkaEAAEKKKEEAKKK--ADAAKKKAEE 1389
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   281 LQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQDSDPEKE---MRENRERELRERIARKKSEWRRKFQEAQKRHQQE 357
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   358 NK--ELKSENSRLLKALSVEKNSTSSVQKLQQ-----------QVVSLSSQLSQKDRLIKSQE----EKIKKLSATPVPV 420
Cdd:PTZ00121 1470 KKadEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkkaDEAKKAEEAKKADEAKKAEEakkaDEAKKAEEKKKAD 1549
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79158654   421 SVVSLNDQDSSEE--PVEQDRDSQEDSDEPQWKAPKIRKGKPALMRESKPILEESLEQKLENM 481
Cdd:PTZ00121 1550 ELKKAEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
104-306 8.73e-04

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 41.89  E-value: 8.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   104 LQCQDFLSSQLAGLEERLQAATSLVQQGEGQ-RAELEKSLQETKQENRRRKQLIATQQLLLQasannyhkcqfcEKSFVN 182
Cdd:pfam02841 122 KYCSALLQDLSEPLEEKISQGTFSKPGGYKLfLEERDKLEAKYNQVPRKGVKAEEVLQEFLQ------------SKEAVE 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   183 YSYLQAHVQrrhpeVTDAEKQKKrKVEEMEDGIEelKEKLRLTQMQLQEEQQADNlrrqqeqeqQRRREQSEKEALERWK 262
Cdd:pfam02841 190 EAILQTDQA-----LTAKEKAIE-AERAKAEAAE--AEQELLREKQKEEEQMMEA---------QERSYQEHVKQLIEKM 252
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 79158654   263 EDERRKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEM 306
Cdd:pfam02841 253 EAEREQLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDL 296
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
366-749 1.72e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 41.96  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   366 SRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRliKSQEEKIKKLSATPVP--VSVVSLNDQDSSEEPVEQDRDSQE 443
Cdd:PTZ00108  998 EYLLGKLERELARLSNKVRFIKHVINGELVITNAKK--KDLVKELKKLGYVRFKdiIKKKSEKITAEEEEGAEEDDEADD 1075
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   444 DSDEPQWKAPK-----IRKGKPALMRESKPILEESLEQKlenmglRKGTKGISKQTFKSLSSllagQRLQKFRQQTNLQS 518
Cdd:PTZ00108 1076 EDDEEELGAAVsydylLSMPIWSLTKEKVEKLNAELEKK------EKELEKLKNTTPKDMWL----EDLDKFEEALEEQE 1145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   519 LRDSLTLEVTRRVKSLQKSSGKPTPntlKQRGKKTSTPLNEKSLRFRQDSKASDRREKSQQPKTLLPTPTPRSKAPPPNQ 598
Cdd:PTZ00108 1146 EVEEKEIAKEQRLKSKTKGKASKLR---KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   599 TPKILAKKNSTPPFSSDEESVEDTAYITSSRGNLSSSVRVVQSGSLLNPTTEPdwtdSELSEDLDLPKIYKTCNPQGSVV 678
Cdd:PTZ00108 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAP----KRVSAVQYSPPPPSKRPDGESNG 1298
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79158654   679 QTLTRSLERQlstPIKTPVGGTRVLPPSSTTPRPAIVKQQALSGEESDSELSSIEELTGRRAGGHKSLEVD 749
Cdd:PTZ00108 1299 GSKPSSPTKK---KVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
206-537 1.92e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    206 RKVEEMEDGIEELKEKLRLTQMQLQEEQQadnlrrqqeqeqqrrreqsEKEALERWKEDERRKFNQEIADLRQLfLQESK 285
Cdd:TIGR02168  684 EKIEELEEKIAELEKALAELRKELEELEE-------------------ELEQLRKELEELSRQISALRKDLARL-EAEVE 743
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    286 EMASKSSSIEAKLLVLQNKEMAgfNNASLQQDSDPEKEMRENRERELRERIARKK--SEWRRKFQEAQKRHQQENKELKS 363
Cdd:TIGR02168  744 QLEERIAQLSKELTELEAEIEE--LEERLEEAEEELAEAEAEIEELEAQIEQLKEelKALREALDELRAELTLLNEEAAN 821
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    364 ENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEKIKKLSATpvpvSVVSLNDQDSSEEPVEQDRDSQE 443
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE----LEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    444 DSDEpqwKAPKIRKGKPALMRESkpileESLEQKLENMGLRKGTkgiSKQTFKSLSSLLAGQRLQKFRQQTNLQSLRDSL 523
Cdd:TIGR02168  898 ELSE---ELRELESKRSELRREL-----EELREKLAQLELRLEG---LEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966
                          330
                   ....*....|....
gi 79158654    524 TLEVTRRVKSLQKS 537
Cdd:TIGR02168  967 EEEARRRLKRLENK 980
 
Name Accession Description Interval E-value
Dzip-like_N pfam13815
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ...
30-150 3.16e-46

Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.


Pssm-ID: 433498 [Multi-domain]  Cd Length: 118  Bit Score: 160.18  E-value: 3.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    30 FRFRSRTEPIDWRRLSTLDVDRVARDMDVSVLQDFIMTVTFCALEGERCPNcrgPVDPSLVKLLRMSQLSTEYLLQCQDF 109
Cdd:pfam13815   1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEAPH---FVDPHFLKLFRLAQLTIEYLLHSQEC 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 79158654   110 LSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENR 150
Cdd:pfam13815  78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
108-409 2.43e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 2.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 108 DFLSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQE-NRRRKQLIATQQLLLQASAnnyhkcqfceksfvnysyl 186
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLElEELELELEEAQAEEYELLA------------------- 295
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 187 qahvqrrhpEVTDAEKQKKRKVEEMEDGIEELKE-KLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKEDE 265
Cdd:COG1196 296 ---------ELARLEQDIARLEERRRELEERLEElEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 266 RRKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQdsdpEKEMRENRERELRERIARKKSEWRR 345
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE----RLEEELEELEEALAELEEEEEEEEE 442
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79158654 346 KFQEAQKRHQQENKELKSENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEK 409
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
PTZ00121 PTZ00121
MAEBL; Provisional
132-481 1.11e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   132 EGQRAELEKSLQETKQENRRRKQLIATQQLLLQAS----ANNYHKCQFCEKsfvnysylqAHVQRRHPEVTDAEKQKK-- 205
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEearkADELKKAEEKKK---------ADEAKKAEEKKKADEAKKka 1311
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   206 ---RKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEK--EALERWKEDERRKfnQEIADLRQLF 280
Cdd:PTZ00121 1312 eeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEkaEAAEKKKEEAKKK--ADAAKKKAEE 1389
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   281 LQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQDSDPEKE---MRENRERELRERIARKKSEWRRKFQEAQKRHQQE 357
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   358 NK--ELKSENSRLLKALSVEKNSTSSVQKLQQ-----------QVVSLSSQLSQKDRLIKSQE----EKIKKLSATPVPV 420
Cdd:PTZ00121 1470 KKadEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkkaDEAKKAEEAKKADEAKKAEEakkaDEAKKAEEKKKAD 1549
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79158654   421 SVVSLNDQDSSEE--PVEQDRDSQEDSDEPQWKAPKIRKGKPALMRESKPILEESLEQKLENM 481
Cdd:PTZ00121 1550 ELKKAEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
110-291 2.36e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 2.36e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 110 LSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENRRRKQLIATQQLLL--------QASANNYHKCQFCEKSFV 181
Cdd:COG4942  53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELaellralyRLGRQPPLALLLSPEDFL 132
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 182 ----NYSYLQAHVQRRHpEVTDAEKQKKRKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEA 257
Cdd:COG4942 133 davrRLQYLKYLAPARR-EQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 79158654 258 LERWKE--DERRKFNQEIADLRQLFLQESKEMASKS 291
Cdd:COG4942 212 AAELAElqQEAEELEALIARLEAEAAAAAERTPAAG 247
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
107-317 4.07e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.24  E-value: 4.07e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 107 QDFLSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENRRRKQLIATQQLLLQASANNyhkcqfceksfvnysyL 186
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA----------------L 367
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654 187 QAHVQRRHPEVTDAEKQKKRKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKEDER 266
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 79158654 267 RKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQD 317
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
PTZ00121 PTZ00121
MAEBL; Provisional
119-449 4.29e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   119 ERLQAATSLVQQGEGQRAELEKSLQETKQENRRRKQLIATQQLLLQASannyhkcqfcEKSFVNYSYLQAHVQRRHPEVT 198
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE----------EARIEEVMKLYEEEKKMKAEEA 1612
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   199 DAEKQKKRKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKEDERRKFNQEiadlrq 278
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------ 1686
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   279 lflQESKEMASKSSSIEAKLLVLQNKEMAGFNNASLQQDSDPEKEMRENRERELRERIARKKSEWRRKFQEAQKRHQQEN 358
Cdd:PTZ00121 1687 ---EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   359 K--ELKSENSRLLKALSVEknstssvQKLQQQVVSLSSQLSQKDRLIKSQEEKIKKLSATPVPVSVVSLNDQDSSEEPVE 436
Cdd:PTZ00121 1764 KeeEKKAEEIRKEKEAVIE-------EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVA 1836
                         330
                  ....*....|....
gi 79158654   437 QDRDSQ-EDSDEPQ 449
Cdd:PTZ00121 1837 DSKNMQlEEADAFE 1850
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
110-278 6.10e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.51  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654  110 LSSQLAGLEERLQAATSLVQQGEGQRAELEKSLQETKQENRRRKQL--IATQQLLLQASANNY-HKCQFCEKSFVNYSYL 186
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELkeKAEEYIKLSEFYEEYlDELREIEKRLSRLEEE 322
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654  187 QAHVQRRHPEVTDAEKQK---KRKVEEMEDGIEELKEKLRLTQMQLQEEQQADNLRRQQEQEQQRRREQSEKEALERWKE 263
Cdd:PRK03918 323 INGIEERIKELEEKEERLeelKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
                        170
                 ....*....|....*..
gi 79158654  264 --DERRKFNQEIADLRQ 278
Cdd:PRK03918 403 ieEEISKITARIGELKK 419
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
104-306 8.73e-04

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 41.89  E-value: 8.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   104 LQCQDFLSSQLAGLEERLQAATSLVQQGEGQ-RAELEKSLQETKQENRRRKQLIATQQLLLQasannyhkcqfcEKSFVN 182
Cdd:pfam02841 122 KYCSALLQDLSEPLEEKISQGTFSKPGGYKLfLEERDKLEAKYNQVPRKGVKAEEVLQEFLQ------------SKEAVE 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   183 YSYLQAHVQrrhpeVTDAEKQKKrKVEEMEDGIEelKEKLRLTQMQLQEEQQADNlrrqqeqeqQRRREQSEKEALERWK 262
Cdd:pfam02841 190 EAILQTDQA-----LTAKEKAIE-AERAKAEAAE--AEQELLREKQKEEEQMMEA---------QERSYQEHVKQLIEKM 252
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 79158654   263 EDERRKFNQEIADLRQLFLQESKEMASKSSSIEAKLLVLQNKEM 306
Cdd:pfam02841 253 EAEREQLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDL 296
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
171-194 1.69e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.12  E-value: 1.69e-03
                          10        20
                  ....*....|....*....|....
gi 79158654   171 HKCQFCEKSFVNYSYLQAHvQRRH 194
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRH-LRTH 23
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
366-749 1.72e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 41.96  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   366 SRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRliKSQEEKIKKLSATPVP--VSVVSLNDQDSSEEPVEQDRDSQE 443
Cdd:PTZ00108  998 EYLLGKLERELARLSNKVRFIKHVINGELVITNAKK--KDLVKELKKLGYVRFKdiIKKKSEKITAEEEEGAEEDDEADD 1075
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   444 DSDEPQWKAPK-----IRKGKPALMRESKPILEESLEQKlenmglRKGTKGISKQTFKSLSSllagQRLQKFRQQTNLQS 518
Cdd:PTZ00108 1076 EDDEEELGAAVsydylLSMPIWSLTKEKVEKLNAELEKK------EKELEKLKNTTPKDMWL----EDLDKFEEALEEQE 1145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   519 LRDSLTLEVTRRVKSLQKSSGKPTPntlKQRGKKTSTPLNEKSLRFRQDSKASDRREKSQQPKTLLPTPTPRSKAPPPNQ 598
Cdd:PTZ00108 1146 EVEEKEIAKEQRLKSKTKGKASKLR---KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   599 TPKILAKKNSTPPFSSDEESVEDTAYITSSRGNLSSSVRVVQSGSLLNPTTEPdwtdSELSEDLDLPKIYKTCNPQGSVV 678
Cdd:PTZ00108 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAP----KRVSAVQYSPPPPSKRPDGESNG 1298
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79158654   679 QTLTRSLERQlstPIKTPVGGTRVLPPSSTTPRPAIVKQQALSGEESDSELSSIEELTGRRAGGHKSLEVD 749
Cdd:PTZ00108 1299 GSKPSSPTKK---KVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
206-537 1.92e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    206 RKVEEMEDGIEELKEKLRLTQMQLQEEQQadnlrrqqeqeqqrrreqsEKEALERWKEDERRKFNQEIADLRQLfLQESK 285
Cdd:TIGR02168  684 EKIEELEEKIAELEKALAELRKELEELEE-------------------ELEQLRKELEELSRQISALRKDLARL-EAEVE 743
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    286 EMASKSSSIEAKLLVLQNKEMAgfNNASLQQDSDPEKEMRENRERELRERIARKK--SEWRRKFQEAQKRHQQENKELKS 363
Cdd:TIGR02168  744 QLEERIAQLSKELTELEAEIEE--LEERLEEAEEELAEAEAEIEELEAQIEQLKEelKALREALDELRAELTLLNEEAAN 821
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    364 ENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEKIKKLSATpvpvSVVSLNDQDSSEEPVEQDRDSQE 443
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE----LEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    444 DSDEpqwKAPKIRKGKPALMRESkpileESLEQKLENMGLRKGTkgiSKQTFKSLSSLLAGQRLQKFRQQTNLQSLRDSL 523
Cdd:TIGR02168  898 ELSE---ELRELESKRSELRREL-----EELREKLAQLELRLEG---LEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966
                          330
                   ....*....|....
gi 79158654    524 TLEVTRRVKSLQKS 537
Cdd:TIGR02168  967 EEEARRRLKRLENK 980
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
171-194 5.27e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.93  E-value: 5.27e-03
                          10        20
                  ....*....|....*....|....
gi 79158654   171 HKCQFCEKSFVNYSYLQAHVQRRH 194
Cdd:pfam13894   1 FKCPICGKSFSSKKSLKRHLKTHH 24
PTZ00121 PTZ00121
MAEBL; Provisional
187-465 7.86e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 7.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   187 QAHVQRRHPEVTDAEKQKK----RKVEEMEDGIEELKEKLRLTQMQLQ-EEQQADNLRRQQEQEQQRRREQSEKEALERW 261
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKaeekKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   262 KEDERRKFNQEIADLRQLFLQESKEMASKSSsieakllVLQNKEMAGFNNASLQQDSDpekemrenrerelrerIARKKS 341
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEE-------LKKAEEENKIKAAEEAKKAE----------------EDKKKA 1677
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654   342 EWRRKfQEAQKRHQQENKELKSENSRllKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEKIKKLSATPVpvs 421
Cdd:PTZ00121 1678 EEAKK-AEEDEKKAAEALKKEAEEAK--KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--- 1751
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 79158654   422 vvslndqdssEEpvEQDRDSQEDSDEPQWKAPKIRKGKPALMRE 465
Cdd:PTZ00121 1752 ----------DE--EEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
212-480 9.03e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.65  E-value: 9.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    212 EDGIEELKEKLRLTQMQLQEEQQADNLrrqqeqeqqrrreQSEKEALERW--------KEDERRKFNQEIADLRQLFLQE 283
Cdd:TIGR02168  192 EDILNELERQLKSLERQAEKAERYKEL-------------KAELRELELAllvlrleeLREELEELQEELKEAEEELEEL 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    284 SKEMASKSSSIEAKLLVLQNKEM------AGFNNAS-----------LQQDSDPEKEMRENRERELRERIARKKSEWRRK 346
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEeieelqKELYALAneisrleqqkqILRERLANLERQLEELEAQLEELESKLDELAEE 338
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79158654    347 FQEAQKRHQQENKELKSENSRLLKALSVEKNSTSSVQKLQQQVVSLSSQLSQKDRLIKSQEEKIKKLSATpvpvsvvsLN 426
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR--------LE 410
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 79158654    427 DQDSSEEPVEQDRDSQEDS-DEPQWKAPKIRKGKPALMRESKPILEESLEQKLEN 480
Cdd:TIGR02168  411 RLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEE 465
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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