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Conserved domains on  [gi|71679836|gb|AAI00014|]
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Mitochondrial ribosomal protein S7 [Danio rerio]

Protein Classification

28S ribosomal protein S7( domain architecture ID 10201916)

mitochondrial 28S ribosomal protein S7 is required for the assembly of the small ribosomal subunit; belongs to the universal ribosomal protein uS7 family

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 22-226 1.00e-115

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271249  Cd Length: 199  Bit Score: 328.43  E-value: 1.00e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  22 SRYNPYYLDPEPRKDapvsdselspEQKELQEL-----KTVRPIKAALTGDTSSAFSDPLISKFINMMMYDGNKVLARGI 96
Cdd:cd14870   1 SVYPPHYVEPVYDKQ----------EQEKLLDSgdereLAHRPIKAAKSDETSSVFYDPLVSKFINMMMKKGNKELAREI 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  97 MTQTLETIKRKQVEKYHKSPAAKREEIECNPYAIFHQAMENCKPVIGLASIQKGGKFYQVPVPLTDNRRRFMAMKWMITE 176
Cdd:cd14870  71 VEKTLENIKRIQLEKYHKATDEEKESIELNPLVIFHKAVENCKPLLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEA 150

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 71679836 177 CRTNKQgRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYR 226
Cdd:cd14870 151 CREKKR-KIRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
 
Name Accession Description Interval E-value
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 22-226 1.00e-115

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 328.43  E-value: 1.00e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  22 SRYNPYYLDPEPRKDapvsdselspEQKELQEL-----KTVRPIKAALTGDTSSAFSDPLISKFINMMMYDGNKVLARGI 96
Cdd:cd14870   1 SVYPPHYVEPVYDKQ----------EQEKLLDSgdereLAHRPIKAAKSDETSSVFYDPLVSKFINMMMKKGNKELAREI 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  97 MTQTLETIKRKQVEKYHKSPAAKREEIECNPYAIFHQAMENCKPVIGLASIQKGGKFYQVPVPLTDNRRRFMAMKWMITE 176
Cdd:cd14870  71 VEKTLENIKRIQLEKYHKATDEEKESIELNPLVIFHKAVENCKPLLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEA 150

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 71679836 177 CRTNKQgRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYR 226
Cdd:cd14870 151 CREKKR-KIRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 72-227 1.66e-51

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 164.08  E-value: 1.66e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKrkqvEKYHKspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:COG0049  18 YNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIE----EKTGE-----------DPLEVFEKALENVKPLVEVKSRRVGG 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836 152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:COG0049  83 ATYQVPVEVRPERRQALAMRWIIDAAR-KRKEKT-MAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 72-220 1.79e-49

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 157.93  E-value: 1.79e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836    72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGK---------------NPLEVFVKALENVKPRVEVKSRRVGG 65

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71679836   152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANR 220
Cdd:pfam00177  66 ATYQVPVEVRPERRVALALRWIIEAAR-KRSEKS-MAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 72-227 1.18e-48

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 156.80  E-value: 1.18e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836   72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:PRK05302  18 YGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGK---------------DPLEVFEKALENVKPVVEVKSRRVGG 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836  152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:PRK05302  83 ATYQVPVEVRPERRQALAMRWLVEAAR-KRGEKT-MAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 72-227 1.89e-41

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 138.20  E-value: 1.89e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836    72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:TIGR01029  16 YGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGE---------------DPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836   152 KFYQVPVPLTDNRRRFMAMKWMITECRtnKQGRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAAR--KRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
 
Name Accession Description Interval E-value
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 22-226 1.00e-115

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 328.43  E-value: 1.00e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  22 SRYNPYYLDPEPRKDapvsdselspEQKELQEL-----KTVRPIKAALTGDTSSAFSDPLISKFINMMMYDGNKVLARGI 96
Cdd:cd14870   1 SVYPPHYVEPVYDKQ----------EQEKLLDSgdereLAHRPIKAAKSDETSSVFYDPLVSKFINMMMKKGNKELAREI 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  97 MTQTLETIKRKQVEKYHKSPAAKREEIECNPYAIFHQAMENCKPVIGLASIQKGGKFYQVPVPLTDNRRRFMAMKWMITE 176
Cdd:cd14870  71 VEKTLENIKRIQLEKYHKATDEEKESIELNPLVIFHKAVENCKPLLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEA 150

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 71679836 177 CRTNKQgRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYR 226
Cdd:cd14870 151 CREKKR-KIRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 72-227 1.66e-51

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 164.08  E-value: 1.66e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKrkqvEKYHKspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:COG0049  18 YNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIE----EKTGE-----------DPLEVFEKALENVKPLVEVKSRRVGG 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836 152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:COG0049  83 ATYQVPVEVRPERRQALAMRWIIDAAR-KRKEKT-MAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 74-220 6.25e-50

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 158.96  E-value: 6.25e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  74 DPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVekyhkspaakreeieCNPYAIFHQAMENCKPVIGLASIQKGGKF 153
Cdd:cd00323   1 KLLLKKFINILMKDGKKSKAEKIFSKALKILKKKTK---------------KNPLKLLVEAIENIKPLVEVRSIKKRGKV 65

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71679836 154 YQVPVPLTDNRRRFMAMKWMITECRTNKqgRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANR 220
Cdd:cd00323  66 YQVPVPLSPNRQVSLAIKWLLKAVRKRK--ETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 72-220 1.79e-49

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 157.93  E-value: 1.79e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836    72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGK---------------NPLEVFVKALENVKPRVEVKSRRVGG 65

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71679836   152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANR 220
Cdd:pfam00177  66 ATYQVPVEVRPERRVALALRWIIEAAR-KRSEKS-MAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 72-227 1.18e-48

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 156.80  E-value: 1.18e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836   72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:PRK05302  18 YGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGK---------------DPLEVFEKALENVKPVVEVKSRRVGG 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836  152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:PRK05302  83 ATYQVPVEVRPERRQALAMRWLVEAAR-KRGEKT-MAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 72-220 9.59e-44

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 143.74  E-value: 9.59e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKrkqvEKYHKspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:cd14869   7 YNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIK----KKTGK-----------DPLEVFEKALENVKPLVEVRSRRVGG 71

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71679836 152 KFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANR 220
Cdd:cd14869  72 ATYQVPVEVRPERRQSLALRWIIEAAR-KRKEKS-MAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 72-227 1.89e-41

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 138.20  E-value: 1.89e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836    72 FSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKGG 151
Cdd:TIGR01029  16 YGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGE---------------DPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836   152 KFYQVPVPLTDNRRRFMAMKWMITECRtnKQGRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAAR--KRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 75-228 3.39e-32

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 114.40  E-value: 3.39e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  75 PLISKFINMMMYDGNKVLARGIMTQTLETIKRKQvekyhksPAAKREEIEcnpyaIFHQAMENCKPVIGLASIQKGGKFY 154
Cdd:cd15484   2 LLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQ-------SAQTEDVLV-----ILVTAVENVKPSFEVRKVRIAGTTQ 69

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71679836 155 QVPVPLTDNRRRFMAMKWMITECR-----TNKQGRTLMYeKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRWW 228
Cdd:cd15484  70 LIPAALSPNKQETLAIRWILEAAKkkqrkQSKKRYSFAY-CLADEILDASKKQGKARQKRDELHKLAEANRSLAHYRWW 147
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 73-225 6.61e-31

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 110.83  E-value: 6.61e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  73 SDP-----LISKFINMMMYDGNKVLARGIMTQTLETIKrkqvekyhkspaakrEEIECNPYAIFHQAMENCKPVIGLASI 147
Cdd:cd14871   6 PDPiynsrLVNMLVNRILKSGKKSLAYRIVYEALKEIK---------------QKTKQDPLEVLEQAIRNVTPLVEVKAR 70

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71679836 148 QKGGKFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHY 225
Cdd:cd14871  71 RVGGSTYQVPVEVRSERGTALAIRWLLKASR-KRSGRS-MASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 73-226 1.99e-28

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 104.97  E-value: 1.99e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836   73 SDP-----LISKFINMMMYDGNKVLARGIMTQTLETIKRKQvekyhkspaakreeiECNPYAIFHQAMENCKPVIGLASI 147
Cdd:CHL00053  14 PDPiyrnrLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKT---------------EKNPLSVLRQAIRNVTPDVEVKAR 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71679836  148 QKGGKFYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTlMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYR 226
Cdd:CHL00053  79 RVGGSTYQVPIEIGSTRGKALAIRWLLKASR-KRSGRN-MAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 73-220 6.22e-26

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 98.41  E-value: 6.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  73 SDPLISKFINMMMYDGNKVLARGIMTQTLETIkrkqvekyHKSPAAkreeiecNPYAIFHQAMENCKPVIGLASIQKGGK 152
Cdd:cd14868  21 EDPLLEQLTNLIMKHGKKAKAQRIVSRALLHI--------HTLTRA-------DPLPLLRQAIDSAAPLVKIKSQKKGAK 85

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71679836 153 FYQVPVPLTDNRRRFMAMKWMITECRtNKQGRTLMyEKLSQELLAAFANEGNVIKRKHDLHKMAEANR 220
Cdd:cd14868  86 NVQVPVPLNERQRRRKAIKWILEASD-KRPGKSFS-ERLAEEIIAVVEGTSSALEKKEQVHKLAVANR 151
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 75-220 8.93e-06

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 44.85  E-value: 8.93e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836  75 PLISKFIN-MMMYDGN---KVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKG 150
Cdd:cd14867  48 PIVERLINsLMMHGRNtgkKLMAYRIVKHAFEIIHLLTGK---------------NPIQVLVDAIENSGPREDTTRIGYG 112

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71679836 151 GKFYQVPVPLTDNRRRFMAMKWMITECRT----NKqgRTlMYEKLSQELLAAFANEGN--VIKRKHDLHKMAEANR 220
Cdd:cd14867 113 GTVRRQAVDVSPLRRVNQALRLIATGAREaafrNI--KS-IAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 75-220 1.22e-04

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 41.68  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71679836   75 PLISKFINMMMY----DGNKVLARGIMTQTLETIKRKQVEkyhkspaakreeiecNPYAIFHQAMENCKPVIGLASIQKG 150
Cdd:PTZ00091  56 PIVERLVNSLMFhgrnNGKKLLAVRIVKHAFEIIHLLTDK---------------NPLQVLVDAVQNGGPREDSTRVGSG 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71679836  151 GKFYQVPVPLTDNRRRFMAMKWMITECRTN--KQGRTLMyEKLSQELLAAFANEGN--VIKRKHDLHKMAEANR 220
Cdd:PTZ00091 121 GVVRRQAVDVSPLRRVNQAIYLICKGAREAafRNIKTIA-ECLADEIINASKESSNsyAIKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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