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Conserved domains on  [gi|33585843|gb|AAH55932|]
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Fbn1 protein, partial [Mus musculus]

Protein Classification

EGF domain-containing protein( domain architecture ID 10041858)

EGF domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
1-29 7.73e-04

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


:

Pssm-ID: 238010  Cd Length: 36  Bit Score: 35.92  E-value: 7.73e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 33585843   1 CSYG--CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:cd00053   8 CSNGgtCVNTPGSYRCVCPPGY--TGDRSCE 36
 
Name Accession Description Interval E-value
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
1-29 7.73e-04

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 35.92  E-value: 7.73e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 33585843   1 CSYG--CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:cd00053   8 CSNGgtCVNTPGSYRCVCPPGY--TGDRSCE 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
1-29 1.37e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.30  E-value: 1.37e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 33585843      1 CSYG--CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:smart00179  11 CQNGgtCVNTVGSYRCECPPGY--TDGRNCE 39
 
Name Accession Description Interval E-value
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
1-29 7.73e-04

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 35.92  E-value: 7.73e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 33585843   1 CSYG--CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:cd00053   8 CSNGgtCVNTPGSYRCVCPPGY--TGDRSCE 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
1-29 1.37e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.30  E-value: 1.37e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 33585843      1 CSYG--CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:smart00179  11 CQNGgtCVNTVGSYRCECPPGY--TDGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
1-20 3.15e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 34.15  E-value: 3.15e-03
                        10        20
                ....*....|....*....|..
gi 33585843   1 CSYG--CSNTEGGYLCGCPPGY 20
Cdd:cd00054  11 CQNGgtCVNTVGSYRCSCPPGY 32
EGF smart00181
Epidermal growth factor-like domain;
1-29 4.19e-03

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 34.03  E-value: 4.19e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 33585843      1 CSYG-CSNTEGGYLCGCPPGYfrIGQGHCV 29
Cdd:smart00181   8 CSNGtCINTPGSYTCSCPPGY--TGDKRCE 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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