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Conserved domains on  [gi|30851203|gb|AAH52593|]
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LRP1 protein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 3.21e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 48.78  E-value: 3.21e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30851203     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192   1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
140-187 7.45e-06

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 46.22  E-value: 7.45e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 30851203 140 QLQadGKTCKDFDECSVYG-TCSQLCTNTDGSFICGCVEGYLLQPDNRS 187
Cdd:cd01475 178 KFQ--GKICVVPDLCATLShVCQQVCISTPGSYLCACTEGYALLEDNKT 224
LDLa super family cl00104
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
71-104 3.42e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


The actual alignment was detected with superfamily member pfam00057:

Pssm-ID: 412164  Cd Length: 37  Bit Score: 40.31  E-value: 3.42e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 30851203    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057   2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 6.90e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 36.45  E-value: 6.90e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 30851203   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 3.21e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 48.78  E-value: 3.21e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30851203     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192   1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
27-60 5.28e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 5.28e-08
                        10        20        30
                ....*....|....*....|....*....|....
gi 30851203  27 CSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:cd00112   1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
25-60 6.89e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 6.89e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 30851203    25 KTCSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:pfam00057   1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEE 35
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
140-187 7.45e-06

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 46.22  E-value: 7.45e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 30851203 140 QLQadGKTCKDFDECSVYG-TCSQLCTNTDGSFICGCVEGYLLQPDNRS 187
Cdd:cd01475 178 KFQ--GKICVVPDLCATLShVCQQVCISTPGSYLCACTEGYALLEDNKT 224
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
158-188 7.49e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 42.23  E-value: 7.49e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 30851203   158 GTCSQLCTNTDGSFICGCVEGYLLQPDNRSC 188
Cdd:pfam14670   6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
71-104 3.42e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 3.42e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 30851203    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057   2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
71-104 8.01e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 39.15  E-value: 8.01e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30851203     71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:smart00192   1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
72-104 8.98e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 39.11  E-value: 8.98e-05
                        10        20        30
                ....*....|....*....|....*....|...
gi 30851203  72 CQPNEHNClGTELCVPMSRLCNGVQDCMDGSDE 104
Cdd:cd00112   1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 6.90e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 36.45  E-value: 6.90e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 30851203   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
150-179 4.98e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.14  E-value: 4.98e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 30851203    150 DFDECSVYGTCSQ--LCTNTDGSFICGCVEGY 179
Cdd:smart00179   1 DIDECASGNPCQNggTCVNTVGSYRCECPPGY 32
 
Name Accession Description Interval E-value
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 3.21e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 48.78  E-value: 3.21e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30851203     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192   1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
27-60 5.28e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 5.28e-08
                        10        20        30
                ....*....|....*....|....*....|....
gi 30851203  27 CSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:cd00112   1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
25-60 6.89e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 6.89e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 30851203    25 KTCSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:pfam00057   1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEE 35
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
140-187 7.45e-06

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 46.22  E-value: 7.45e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 30851203 140 QLQadGKTCKDFDECSVYG-TCSQLCTNTDGSFICGCVEGYLLQPDNRS 187
Cdd:cd01475 178 KFQ--GKICVVPDLCATLShVCQQVCISTPGSYLCACTEGYALLEDNKT 224
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
158-188 7.49e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 42.23  E-value: 7.49e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 30851203   158 GTCSQLCTNTDGSFICGCVEGYLLQPDNRSC 188
Cdd:pfam14670   6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
71-104 3.42e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.31  E-value: 3.42e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 30851203    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057   2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
71-104 8.01e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 39.15  E-value: 8.01e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30851203     71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:smart00192   1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
72-104 8.98e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 39.11  E-value: 8.98e-05
                        10        20        30
                ....*....|....*....|....*....|...
gi 30851203  72 CQPNEHNClGTELCVPMSRLCNGVQDCMDGSDE 104
Cdd:cd00112   1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 6.90e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 36.45  E-value: 6.90e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 30851203   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
150-179 4.98e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.14  E-value: 4.98e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 30851203    150 DFDECSVYGTCSQ--LCTNTDGSFICGCVEGY 179
Cdd:smart00179   1 DIDECASGNPCQNggTCVNTVGSYRCECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
150-182 8.62e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 33.38  E-value: 8.62e-03
                        10        20        30
                ....*....|....*....|....*....|....*
gi 30851203 150 DFDECSVYGTCS--QLCTNTDGSFICGCVEGYLLQ 182
Cdd:cd00054   1 DIDECASGNPCQngGTCVNTVGSYRCSCPPGYTGR 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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